Digital Commons Network^™

Beginning Science Teachers' Subject Matter Knowledge, Misconceptions, And Emerging Inquiry-Based Teaching Practices (Poster), Elizabeth B. Lewis, Ana Rivero, Lyrica Lucas, Aaron Musson, Amy Tankersley

Department of Teaching, Learning, and Teacher Education: Presentations

When we investigated the relationship of science subject matter knowledge with subsequent inquiry-based instruction, we found on average that over the induction period the MAT teachers taught lessons using more inquiry-based instruction at twice the rate of the average teacher prepared in the undergraduate program without an undergraduate degree in science. Specifically, new science teachers from the MAT program with an undergraduate degree in chemistry were better prepared to use an inquiry-based approach to teaching chemistry. Our research of our two teacher preparation programs contribute a reliable design for producing highly-qualified teachers who can provide active, engaging, constructivist learning opportunities …

Fish & Wildlife News: Summer 2018, Matt Trott

Fish and Wildlife News

No abstract provided.

Prevascularization Of 3d Printed Bone Scaffolds By Bioactive Hydrogels And Cell Co-Culture, Mitchell Kuss, Shaohua Wu, Ying Wang, Jason B. Untrauer, Wenlong Li, Jung Yul Lim, Bin Duan

Department of Mechanical and Materials Engineering: Faculty Publications

Vascularization is a fundamental prerequisite for large bone construct development and remains one of the main challenges of bone tissue engineering. Our current study presents the combination of 3D printing technique with a hydrogel-based prevascularization strategy to generate prevascularized bone constructs. Human adipose derived mesenchymal stem cells (ADMSC) and human umbilical vein endothelial cells (HUVEC) were encapsulated within our bioactive hydrogels, and the effects of culture conditions on in vitro vascularization were determined. We further generated composite constructs by forming 3D printed polycaprolactone/hydroxyapatite scaffolds coated with cell-laden hydrogels and determined how the co-culture affected vascularization and osteogenesis. It was demonstrated …

Using Synthetic Lethality To Sensitize Pediatric Brain Cancer Cells To The Dna Damaging Effects Of Radiation Therapy, Megan Ruckman, Rose Nelson, Forrest Kievit

UCARE: Research Products

Brain tumors are the leading cause of cancer related deaths in children. As a treatment, radiotherapy is very effective, but it also comes with many severe side effects, such as radiation-induced adverse developmental and psychosocial effects.² Cancer, because it is a mutagenic disease, is by definition a disease of DNA repair pathways. Here we utilize drugs to inhibit various DNA repair pathways with the purpose of sensitizing cancer cells to radiotherapy so that lower doses may be used. Hopefully this would improve the lifelong outcomes of patients that would otherwise not survive or would be left with lifelong neurocognitive …

Comparison Of Nitrogen Fertigation Management Strategies For Center-Pivot Irrigated Maize In The Sub-Humid Area Of China, Jingjing Li, Wenjing Zang, Yaojun Li, Derek M. Heeren, Haijun Yan

Department of Agricultural and Biological Systems Engineering: Faculty Publications

In the sub-humid region of Northeast China, increasing use of center-pivot irrigation systems has caused increased interest in sprinkler fertigation technology in maize production to improve nitrogen (N) use efficiency and protect the environment. However, the lack of fertigation strategies for maize cultivation restrains the adoption of sprinkler fertigation technology. A field experiment was carried out in a sub-humid region of Northeast China on maize to determine the effect of different fertigation management strategies on plant growth, grain yield and nitrate content in the soil during the maize growing season. Three N rates (200, 160, and 120 kg N ha …

Lba: An R Package For Latent Budget Analysis, Enio G. Jelihovschi, Ivan Bezerra Allaman

The R Journal

The latent budget model is a mixture model for compositional data sets in which the entries, a contingency table, may be either realizations from a product multinomial distribution or distribution free. Based on this model, the latent budget analysis considers the interactions of two variables; the explanatory (row) and the response (column) variables. The package lba uses expectation-maximization and active constraints method (ACM) to carry out, respectively, the maximum likelihood and the least squares estimation of the model parameters. It contains three main functions, lba which performs the analysis, goodnessfit for model selection and goodness of fit and the plotting …

Onewaytests: An R Package For One-Way Tests In Independent Groups Designs, Osman Dag, Anil Dolgun, Naime Meric Konar

The R Journal

One-way tests in independent groups designs are the most commonly utilized statistical methods with applications on the experiments in medical sciences, pharmaceutical research, agriculture, biology, engineering, social sciences and so on. In this paper, we present the one-way tests package to investigate treatment effects on the dependent variable. The package offers the one-way tests in independent groups designs, which include ANOVA, Welch’s heteroscedastic F test, Welch’s heteroscedastic F test with trimmed means and Winsorized variances, Brown-Forsythe test, Alexander Govern test, James second order test and Kruskal-Wallis test. The package also provides pairwise comparisons, graphical approaches, and assesses variance homogeneity and …

Tackling Uncertainties Of Species Distribution Model Projections With Package Mopa, M. Iturbide, J. Bedia, J.M. Gutiérrez

The R Journal

Species Distribution Models (SDMs) constitute an important tool to assist decision-making in environmental conservation and planning in the context of climate change. Nevertheless, SDM projections are affected by a wide range of uncertainty factors (related to training data, climate projections and SDM techniques), which limit their potential value and credibility. The new package mopa provides tools for designing comprehensive multi-factor SDM ensemble experiments, combining multiple sources of uncertainty (e.g. baseline climate, pseudo-absence realizations, SDM techniques, future projections) and allowing to assess their contribution to the overall spread of the ensemble projection. In addition, mopa is seamlessly integrated with the climate4R …

Collections In R: Review And Proposal, Timothy Barry

The R Journal

R is a powerful tool for data processing, visualization, and modeling. However, R is slower than other languages used for similar purposes, such as Python. One reason for this is that R lacks base support for collections, abstract data types that store, manipulate, and return data (e.g., sets, maps, stacks). An exciting recent trend in the R extension ecosystem is the development of collection packages, packages that provide classes that implement common collections. At least 12 collection packages are available across the two major R extension repositories, the Comprehensive R Archive Network (CRAN) and Bioconductor. In this article, we compare …

Pstat: An R Package To Assess Population Differentiation In Phenotypic Traits, Stéphane Blondeau Da Silva, Anne Da Silva

The R Journal

The package Pstat calculates P_ST values to assess differentiation among populations from a set of quantitative traits and provides bootstrapped distributions and confidence intervals for P_ST. Variations of P_ST as a function of the parameter c/h² are studied as well. The package implements different transformations of the measured phenotypic traits to eliminate variation resulting from allometric growth, including calculation of residuals from linear regression, Reist standardization, and the Aitchison transformation.

Advanced Bayesian Multilevel Modeling With The R Package Brms, Paul-Christian Bürkner

The R Journal

The brms package allows R users to easily specify a wide range of Bayesian single-level and multilevel models which are fit with the probabilistic programming language Stan behind the scenes. Several response distributions are supported, of which all parameters (e.g., location, scale, and shape) can be predicted. Non-linear relationships may be specified using non-linear predictor terms or semi-parametric approaches such as splines or Gaussian processes. Multivariate models can be fit as well. To make all of these modeling options possible in a multilevel framework, brms provides an intuitive and powerful formula syntax, which extends the well known formula syntax of …

Support Vector Machines For Survival Analysis With R, Césaire J.K. Fouodo, Inke R. König, Claus Weihs, Andreas Ziegler, Marvin N. Wright

The R Journal

This article introduces the R package survivalsvm, implementing support vector machines for survival analysis. Three approaches are available in the package: The regression approach takes censoring into account when formulating the inequality constraints of the support vector problem. In the ranking approach, the inequality constraints set the objective to maximize the concordance index for comparable pairs of observations. The hybrid approach combines the regression and ranking constraints in a single model. We describe survival support vector machines and their implementation, provide examples and compare the prediction performance with the Cox proportional hazards model, random survival forests and gradient boosting using …

Mglm: An R Package For Multivariate Categorical Data Analysis, Juhyun Kim, Yiwen Zhang, Joshua Day, Hua Zhou

The R Journal

Data with multiple responses is ubiquitous in modern applications. However, few tools are available for regression analysis of multivariate counts. The most popular multinomial-logit model has a very restrictive mean-variance structure, limiting its applicability to many data sets. This article introduces an R package MGLM, short for multivariate response generalized linear models, that expands the current tools for regression analysis of polytomous data. Distribution fitting, random number generation, regression, and sparse regression are treated in a unifying framework. The algorithm, usage, and implementation details are discussed.

Cchs: An R Package For Stratified Case-Cohort Studies, Edmund Jones

The R Journal

The cchs package contains a function, also called cchs, for analyzing data from a stratified case-cohort study, as used in epidemiology. For data from this type of study, cchs calculates Estimator III of Borgan et al. (2000), which is a score-unbiased estimator for the regression coefficients in the Cox proportional hazards model. From the user’s point of view, the function is similar to coxph (in the survival package) and other widely used model-fitting functions. Convenient software has not previously been available for Estimator III since it is complicated to calculate. SAS and S-Plus code-fragments for the calculation have been published, …

Force-Driven Weave Patterns For Shell Structures In Architectural Design, Khaled Amir Benaida

Architecture Masters of Science Program: Theses

The use of lightweight carbon fiber reinforced polymers (CFRP) in the discipline of architecture opens new possibilities for the construction of architectural components. CFRP has been explored mainly in engineering fields, such as aeronautics, automotive, ballistic and marine engineering. CFRP has also been explored in the discipline of architecture in the construction of shell structures because of its high strength-to-weight ratio and low-cost. There is, however, limited research on how structural analysis can be used to inform weave patterns for shell structures using CFRP.

Further, previous research in the field has not performed physical structural tests to validate which force …

Natural Resource Condition Assessment, Scotts Bluff National Monument, Reilly R. Dibner, Nicole Korfanta, Gary Beauvais, Jonathan Bowler, Kit Freedman, Kelli C. Trujillo, Victoria H. Zero

United States National Park Service: Publications

Executive Summary

In collaboration with the National Park Service, the University of Wyoming Ruckelshaus Institute of Environment and Natural Resources and the Wyoming Natural Diversity Database completed the Natural Resource Condition Assessment (NRCA) for Scotts Bluff National Monument (NM). The purpose of the NRCA is to provide park leaders and resource managers with information on resource conditions to support near-term planning and management, long-term strategic planning, and effective science communication to decision-makers and the public.

Scotts Bluff NM was established in 1919. The purposes of the park include protecting and preserving the Mitchell Pass portion of the Oregon Trail and …

Career Building Among Asian American Immigrant Community College Students In Nebraska: A Phenomenological Study, Minerva D. Tuliao

Department of Educational Administration: Dissertations, Theses, and Student Research

Asian Americans are becoming the fastest growing minority group, and enrolling at community colleges at a faster rate compared to 4-year institutions. In Nebraska, they represent approximately a quarter of the community college student population, comprise 2.3% of the state’s population, and 7% of the state’s workforce.

Despite their increasing numbers, very little is known about Asian Americans in the community college, including issues related to workforce transitions. Within a social cognitive career theory framework (SCCT), this qualitative study explored what career building means to Asian American immigrant community college students in Nebraska. Asian Americans in community colleges are typically …

Smart Bandage For Monitoring And Treatment Of Chronic Wounds, Pooria Mostafalu, Ali Tamayol, Rahim Rahimi, Manuel Ochoa, Akbar Khalilpour, Gita Kiaee, Iman K. Yazdi, Sara Bagherifard, Mehmet R. Dokmeci, Babak Ziaie, Sameer R. Sonkusale, Ali Khademhosseini

Department of Mechanical and Materials Engineering: Faculty Publications

Chronic wounds are a major health concern and they affect the lives of more than 25 million people in the United States. They are susceptible to infection and are the leading cause of nontraumatic limb amputations worldwide. The wound environment is dynamic, but their healing rate can be enhanced by administration of therapies at the right time. This approach requires real-time monitoring of the wound environment with on-demand drug delivery in a closed-loop manner. In this paper, a smart and automated flexible wound dressing with temperature and pH sensors integrated onto flexible bandages that monitor wound status in real-time to …

Water Current, Volume 50, No. 2, Summer 2018

Water Current Newsletter

Reflections on Nebraska’s Irrigation Legacy

Water Management in a Season of Extremes

Isotopic And Geochemical Analysis Of Nitrate Contaminated Groundwater In Edgar, Nebraska, Nathan Roddy

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

High nitrate concentrations in the groundwater beneath Edgar, Nebraska have been measured for well over a decade, exceeding the EPA’s MCL of 10 mg-N/L. Investigating the isotopic signature of nitrate and groundwater have determined the likely source(s) of contamination. Apparent seasonal changes exists in nitrate concentration, isotope ratios, and geochemistry, suggesting that sources and flow paths change as a result of irrigation. Samples collected in December and May had very similar nitrate concentrations (average value of 13.7 mg-N/L) and isotopic ratios (δ¹⁵N 4.46‰ and δ¹⁸O-NO₃ 20.21‰), suggesting synthetic nitrate fertilizers are the major source of …

Assessment Of The Ponderosa Woodlands In Nebraska's Wildcat Hills: Implications For Juniperus Encroachment And Management, Allie Victoria Schiltmeyer

School of Natural Resources: Dissertations, Theses, and Student Research

Ponderosa pine (Pinus ponderosa) is a dominant tree species across western North America. Its eastern distribution includes three populations in western Nebraska. This study assesses the distribution, structure and age of ponderosa pine woodlands in one of those regions, the Wildcat Hills. The Wildcat Hills have escaped severe wildfires seen in recent decades in other ponderosa pine regions. Nevertheless, the Wildcat Hills woodlands face multiple threats including climate change, wildfire, drought, pine beetles, and invasive species. Key to these threats is the stand structure of pine woodlands, which have increased in density across much of ponderosa pine’s range. …

The Effects Of Fungicide And Genetics On Fungal Diseases On Wheat In Nebraska With Emphasis On Stem Rust, Javed Sidiqi

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Foliar fungal diseases of wheat (Triticum aestivum L.) pose a serious threat to wheat production. Despite the significant progress that has been made limiting major fungal diseases by developing resistant cultivars, these diseases challenge the economic sustainability of wheat production. The objectives of this research were (1) To determine the effect of fungal plant pathogens on grain yield in eastern Nebraska, released and pre-release winter wheat genotypes were studied in fungicide treated and untreated plots from 2015 to 2017. (2) To determine if Sr7b is present using allelism tests in ‘Gage’ wheat as previously hypothesized.

Sixty genotypes were planted …

Wildlife Translocation, Michael T. Mengak

Wildlife Damage Management Technical Series

Many people enjoy wildlife. It enriches their lives in many ways. Nationwide, Americans spend over $144 billion annually on fishing, hunting, and wildlife-watching activities. However, wildlife is not always welcome in or near homes, buildings, or other property and can cause significant damage or health and safety issues (Figure 1). In one study, 42% of urban residents reported experiencing a wildlife problem during the previous year and more than half of them said their attempts to resolve the problem were unsuccessful. Many people who experience a wildlife conflict prefer to resolve the issue without harming the offending animal. Of the …

Wildlife Carcass Disposal, Stephen M. Vantassel, Mark A. King

Wildlife Damage Management Technical Series

Many wildlife management situations require the disposal of animal carcasses. These can include the lethal removal of wildlife to resolve damage or conflicts, as well as clean-up after mortalities caused by vehicle collisions, disease, oil spills (Figure 1) or other natural disasters. Carcasses must be disposed of properly to protect public sensitivities, the environment, and public health. Improper disposal of carcasses can result in public outrage, site contamination, injury to animals and people, and the attraction of other animals that may lead to wildlife damage issues. Concern over ground water contamination and disease transmission from improper carcass disposal has resulted …

An Evaluation Of Unmanned Aerial System Multispectral And Thermal Infrared Data As Information For Agricultural Crop And Irrigation Management, Mitch Maguire

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Spatial irrigation management has been steadily advancing over the last several years. A current issue with managing irrigation spatially on sub-field scale is the inability to readily collect the spatial field data necessary to properly manage irrigation. Multispectral and thermal infrared imagery used in informing irrigation management decisions was previously collected by satellite and manned aircraft remote sensing platforms. These remote sensing platforms pose issues concerning economic feasibility, revisit intervals, and weather factors that inhibit the collection of data. Recent developments in unmanned aerial systems, which provide an additional means of collecting multispectral and thermal infrared data, have the potential …

Type 2 Bovine Viral Diarrhea Virus NPro Suppresses Type I Interferon Pathway Signaling In Bovine Cells And Augments Bovine Respiratory Syncytial Virus Replication, Abdulrahman Abdulaziz A. Alkheraif

School of Veterinary and Biomedical Sciences: Dissertations, Theses, and Student Research

Bovine viral diarrhea virus (BVDV) and bovine respiratory syncytial virus (BRSV) infections contribute to the bovine respiratory disease complex (BRDC), which is a multi-factorial disorder involving co-infections of viruses and bacteria including mycoplasma. BRDC causes great economic losses to the United States feedlot industry. BVDV infection induces immunosuppression in infected animals. BVDV N^pro binds and degrades the transcription factor interferon regulatory factor-3 (IRF-3) and effectively blocks type I interferon (type I IFN) expression in host cells. BRSV nonstructural proteins, NS1 and NS2, block activation of IRF-3. In calves, concurrent infection with BVDV and BRSV resulted in more severe clinical …

Preparation And Characterization Of Functionalized Heparin-Loaded Poly-Ɛ-Caprolactone Fibrous Mats To Prevent Infection With Human Papillomaviruses, Daniela Gonzalez, Jorge Ragusa, Peter C. Angeletti, Gustavo F. Larsen

Department of Chemical and Biomolecular Engineering: Faculty Publications

In this study, heparin-loaded poly-ε-caprolactone (PCL) fibrous mats were prepared and characterized based on their physical, cytotoxic, thermal, and biological properties. The main objective of the work described here was to test the hypothesis that incorporation of heparin into a PCL carrier could serve as bio-compatible material capable of inhibiting Human Papillomavirus (HPV) infection. The idea of firmly anchoring heparin to capture soluble virus, vs. a slow heparin release to inhibit a virus in solution was tested. Thus, one material was produced via conventional heparin matrix encapsulation and electrohydrodynamic fiber processing in one step. A second type of material was …

Pollen Evidence Of Medicine From An Embalming Jar Associated With Vittoria Della Rovere, Florence, Italy, Karl Reinhard, Kelsey B. Lynch, Annie Larsen, Braymond Adams, Leon Higley, Marina Milanello Do Amaral, Julia Russ, Donatella Lippi, Johnica J. Morrow, Dario Piombino-Mascali

Karl Reinhard Publications

Various samples of human viscera fragments, sponges, and cloth were collected from embalming jars belonging to members of the Medici family of Florence. One jar was labeled with the name Vittoria della Rovere, who died in March of 1694. This jar contained viscera fragments that were identified as a section of collapsed intestine. The intestine of the Vittoria della Rovere sample contained a large concentration of pollen belonging to the Myrtaceae family. The Myrtaceae pollen was sometimes observed in clusters during analysis, which is indicative of purposeful ingestion of flowers, buds, or a substance derived from floral structures. Thus, the …

Comparison Of Traditional And Alternative Ingredients On Meat Curing Reactions Using A Model System, Faith Rasmussen

Department of Animal Science: Dissertations, Theses, and Student Research

Consumer’s negative perception of “chemical-sounding” ingredients has increased the use of alternative ingredients. The objective of this study was to determine the effect traditional (sodium nitrite with or without sodium erythorbate) or alternative (celery juice powder with or without acerola cherry powder) curing systems with different ingoing concentrations of sodium nitrite using model meat solutions. Curing systems with reducing agents developed the most cured meat pigment (p < 0.001). Using more than 50 ppm of nitrite did not further increase cured meat pigment (p < 0.001). Curing systems with reducing agents and 50 ppm or greater nitrite had the least residual nitrite (p < 0.001). Alternative curing systems had the most residual sulfhydryl groups when formulated with 100 ppm or more nitrite (p < 0.001). Treatments with reducing agents had greater residual reducing capacity than treatments without reducing agents (p < 0.001). Both alternative and traditional curing systems develop similar cured meat pigment but differences in the nitrosation of cysteine exist.

Advisor: Gary A. Sullivan

Evaluating Opportunities And Barriers To Improving The Energy Efficiency Of Small Nebraska Wastewater Treatment Plants, Matthew J. Thompson

Department of Environmental Engineering: Theses and Other Student Research

Wastewater treatment plants (WWTP)s account for about 0.8% of U.S. electricity use. Small WWTPs serving communities of populations less than 10,000 accounts for 95% of treatment plants in Nebraska. These plants are significantly less efficient compared to large systems and thus improving their energy efficiency (E2) is a growing focus in efforts to reduce greenhouse gas emissions associated with their operation. Energy use of plant unit operations was evaluated for several plants and included analysis of energy for space heating. Specific infrastructure and/or operational changes reported by operators following an E2 benchmarking project were evaluated by quantifying the change in …