Digital Commons Network^™

Strong And Tough Continuous Nanofibers, Yuris Dzenis

Department of Mechanical and Materials Engineering: Faculty Publications

Amethod of fabricating a continuous nanofiber is described . The method includes preparing a solution of one or more polymers and one or more solvents and electrospinning the solution by discharging the solution through one or more liquid jets into an electric field to yield one or more continuous nanofibers . The electrospinning process ( i ) highly orients one or more polymer chains in the one or more continuous nanofibers along a fiber axis of the one or more continuous nanofibers , and ( ii ) suppresses polymer crystallization in the one or more continuous nanofibers . The one …

Human Hexokinase I - Allosteric Regulation: Model File Name: 1dgk-Editb22-Allostery_Sc06.Stl, Michelle Howell, Rebecca Roston

3-D Printed Model Structural Files

This is a teaching model of human Hexokinase I in a surface representation with small molecules ADP and G6P included (PDB: 1DGK). It is designed to be hollow with a lever to mimic allosteric regulation. The printable model is already uploaded to Shapeways.com in the MacroMolecules shop under the name “Human Hexokinase I - Allosteric regulation model”. This model has been printed successfully using these parameters on Shapeways’ laser sintering printer in the following material: Processed Versatile Plastic (Strong & Flexible Plastic).

Timber Talk, Vol. 56, No. 3, September 2018

Timber Talk: Nebraska Forest Industry Newsletter

In This Issue:

Lumber Market Reports

Hardwood Lumber Prices

American Logger Council Seeking Great Plains Chapter

Woody Biomass Heating Assistance Available

Bureau of Indian Affairs Preparing for Walnut Timber Sale

2018 Nebraska Forestry Festival (October 27)

Forest Industry Spotlight: Much Ado about Residue

Trading Post

Timber Sales

Nebline, September 2018

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: Septic systems need regular maintenance to function properly

Food & Health

Farm & Acreage

Pests & Wildlife

Horticulture

Early Childhood

4-H & Youth

and other extension news and events

An Observed Instance Of Cooper’S Hawk (Accipiter Cooperii) Predation On A Chicken In An Urban Environment, Don Arp Jr.

Nebraska Bird Review

On February 21, 2015, I had the opportunity to observe a Cooper’s Hawk (Accipiter cooperii) attack, kill, and feed on a chicken in an urban environment.

The attack occurred around 1:10 p.m. on February 21, 2015, in Lincoln, Nebraska, in a residential area that is often referred to as the Bethany neighborhood. With large mature trees and landscape hedges, it provided excellent cover for the hawk’s attack. Weather data for that day show a low temperature of 18 degrees Fahrenheit and a high temperature of 40 degrees Fahrenheit. There was residual snow cover in some areas, as Lincoln had experienced …

The Nebraska Bird Review, Volume 86 September 2018 Number 3

Nebraska Bird Review

Summer Field Report, June - July 2018, by W. Ross Silcock …102

An Observed Instance of Cooper's Hawk (Accipiter cooperii) Predation on a Chicken in an Urban Environment, by Don Arp, Jr. …124

Possible Double-brooding in Scissor-tailed Flycatcher (Tyrannus forficatus), by Wayne J. Mollhoff …128

2017 (29th) Report of the NOU Records Committee, by Mark A. Brogie …131

Subscription and Organization Information … 143

Possible Double-Brooding In Scissor-Tailed Flycatcher (Tyrannus Forficatus), Wayne Mollhoff

Nebraska Bird Review

In a follow-up visit to the site near Alexandria, Thayer Co., where I documented a Scissor-tailed Flycatcher nest with eggs in 2017, I found a pair present at the same site on 8 June 2018. After some searching, I found that their nest, with 4 eggs, was built in the same upright crotch of the same branch where it was located the year before. I knew it was a completely new nest, since the previous nest had been removed after the nesting season the year before. On a second visit on 13 August 2018, to see if the birds and/or …

Summer Field Report, June-July 2018, W. Ross Silcock

Nebraska Bird Review

This was a rather lackluster summer season, notably among waterfowl, shorebirds, and gulls. However, the discovery of a couple of amazing rarities spiced things up. Not only were there a few reports of the increasing Black-bellied Whistling- Duck, but the Fulvous Whistling-Ducks in Lancaster Co were a first state record, albeit a bit overdue. Another major rarity was a Reddish Egret, Nebraska’s third, in Hall Co, seen by almost as many folks as the Fulvous Whistling-Ducks. Close behind were the 6th and 7th Nebraska records of Black-chinned Hummingbird, probably on its way to regular occurrence in the next few years. …

Ageing: A Sin In Nigerian Society?, Raji Abdullateef, Sunkanmi Folorunsho, Adeshina Olawale, Raji Adeyemi

Department of Sociology: Dissertations, Theses, and Student Research

Ageing can be said to be a permanent and irreparable innate process determined by a reduction in mental and equally physical status of people. Due to multiple factors, this essential process and its significance vary significantly among individuals and across cultures. The phenomenon of ageing is not attracting the attention it deserves especially in the developing countries like Nigeria. Importantly, old people in Nigeria are facing many challenges ranging from financial and economic shortcomings, socio-cultural discriminations among others. The study set out to understand the challenges and prospects of ageing in Nigeria. The theory used to explain this is the …

Wild, Native Bees And Managed Honey Bees Benefit From Similar Agricultural Land Uses, Elaine Evans, Matthew Smart, Dan Cariveau, Marla Spivak

Department of Entomology: Faculty Publications

Although both managed and unmanaged bees are important pollinators of crops and wild plants, efforts to address questions about landscapes that best support pollinators often focus on either wild pollinators or honey bees. This study examined if there was concordance between the success of wild bee communities and managed honey bee colonies at sites varying in floral availability and disturbance level in a predominantly agricultural landscape. We also determined which agricultural land uses best supported wild bee communities. The study area in the state of North Dakota in Northern Great Plains in North America is home to understudied native bee …

Assessing The Relationship Between Groundwater Nitrate Concentrations And Environmental Variables Through Repeat Sampling And Statistical Machine Learning: Dutch Flats, Nebraska, Martin Wells

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Nitrate-contaminated aquifers are common in landscapes dominated by agricultural land use. Health concerns related to consuming nitrate-contaminated groundwater are well documented and continued research aimed at decreasing concentrations is critical. A 1990s U.S. Geological Survey (USGS) study focused on groundwater characteristics in the Dutch Flats area of western Nebraska. Agricultural-related practices were determined to largely influence groundwater recharge and nitrate concentrations ([NO₃^-]). Since the conclusion of the USGS study, a transition to more efficient irrigation technology has been observed in this region. The emphasis of this 2016 study was to resample several well nests examined in 1998 …

Exploring The Links Between Early Life And Young Adulthood Social Experiences And Men’S Later Life Psychobiology As Fathers, Mallika S. Sarma, Patty X. Kuo, Sonny Agustin Bechayda, Christopher W. Kuzawa, Lee T. Gettler

Department of Child, Youth, and Family Studies: Faculty Publications

Early life cues of environmental harshness and unpredictability have been hypothesized to influence within-species variation in the timing of life history transitions and the dynamics of reproductive strategies, such as investments in mating and parenting. It is also believed that adolescence is an influential developmental period for male reproductive strategies, with those who achieve greater social and sexual success during that period maintaining faster life history strategies into adulthood. If correct, such early life and post-pubertal experiences could also help shape the psychobiological pathways that mediate reproductive strategies, including the well-documented physiological shifts that occur when some men become parents. …

Induction Of Oil Accumulation By Heat Stress Is Metabolically Distinct From N Stress In The Green Microalgae Coccomyxa Subellipsoidea C169, James W. Allen, Rahul Tevatia, Yaşar Demirel, Concetta C. Dirusso, Paul N. Black

Department of Biochemistry: Faculty Publications

Algae are often promoted as feedstock organisms to produce a sustainable petroleum fossil fuel alternative. However, to induce lipid accumulation most often requires a severe stress that is difficult to induce in large batch cultures. The objective of this study is to analyze and mathematically model heat stress on growth, chlorophyll content, triacylglyceride, and starch synthesis in algae. We initially screened 30 algal species for the most pronounced induction of lipid droplets from heat stress using confocal microscopy and mass spectroscopy techniques. One species, Coccomyxa subellipsoidea C169, was selected and subjected to further biochemical analyses using a jacketed bioreactor amended …

Identification Of Biologically Essential Nodes Via Determinative Power In Logical Models Of Cellular Processes, Trevor Pentzien, Bhanwar L. Puniya, Tomas Helikar, Mihaela T. Matache

Department of Biochemistry: Faculty Publications

A variety of biological networks can bemodeled as logical or Boolean networks. However, a simplification of the reality to binary states of the nodes does not ease the difficulty of analyzing the dynamics of large, complex networks, such as signal transduction networks, due to the exponential dependence of the state space on the number of nodes. This paper considers a recently introduced method for finding a fairly small subnetwork, representing a collection of nodes that determine the states of most other nodes with a reasonable level of entropy. The subnetwork contains the most determinative nodes that yield the highest information …

Occupancy And Habitat Use By Six Species Of Forest Ungulates On Tiwai Island, Sierra Leone, Kathryn R. Mccollum, Emily Belinfante, April L. Conway, John P. Carroll

School of Natural Resources: Faculty Publications

Forest ungulates in West Africa are common bushmeat species and are subject to habitat degradation through deforestation. Based on historical data, there are possibly 12 species of forest Bovidae and Tragulidae found in eastern Sierra Leone. We used camera trapping to assess occupancy by forest ungulates on and around a small protected area, Tiwai Island, Sierra Leone. We then assessed habitat over two field seasons during 2008–2011 for those species where we had sufficient numbers of detections. We detected 6 of 12 potential species and obtained enough data to further assess the habitat of two species. Species detected included the …

The Ecology Of A Tallgrass Treasure: Audubon’S Spring Creek Prairie, Paul A. Johnsgard

Zea E-Books Collection

This book describes the major plant and animal components of Spring Creek Prairie Audubon Center, an 850-acre National Audubon Society tallgrass prairie in Lancaster County, southeastern Nebraska. In addition to providing a species list of the area’s plants (368 species), there are comprehensive annotated lists of its birds (240), mammals (43), reptiles (23), and amphibians (10). There are also variably complete annotated lists of the area’s butterflies (76), sphinx moths (30), silk moths (7), dragonflies (24), damselflies (11), grasshoppers (9), katydids (11), mantids (2), and walkingsticks (2). Brief profiles of life histories and ecologies of 55 animal and 7 plant …

Predicting Impacts Of Chemicals From Organisms To Ecosystem Service Delivery: A Case Study Of Endocrine Disruptor Effects On Trout, Valery E. Forbes, Steve Railsback, Chiara Accolla, Bjorn Birnir, Randall J.F. Bruins, Virginie Ducrot, Nika Galic, Kristina Garber, Bret C. Harvey, Henriette I. Jager, Andrew Kanarek, Robert Pastorok, Richard Rebarber, Pernille Thorbek, Chris J. Salice

Department of Mathematics: Faculty Publications

We demonstrate how mechanistic modeling can be used to predict whether and how biological responses to chemicals at (sub)organismal levels in model species (i.e., what we typically measure) translate into impacts on ecosystem service delivery (i.e., what we care about). We consider a hypothetical case study of two species of trout, brown trout (Salmo trutta; BT) and greenback cutthroat trout (Oncorhynchus clarkii stomias; GCT). These hypothetical populations live in a high-altitude river system and are exposed to human-derived estrogen (17α‑ethinyl estradiol, EE2), which is the bioactive estrogen in many contraceptives. We use the individual based model in STREAM …

A Multi-Isotope (Δ13c, Δ15n, Δ34s, Δ2h) Approach To Establishing Migratory Connectivity In Lesser Snow Geese: Tracking An Overabundant Species, Drew N. Fowler, Elisabeth B. Webb, Frank B. Baldwin, Mark P. Vrtiska, Keith A. Hobson

Nebraska Game and Parks Commission: Staff Research Publications

Expanding populations of North American midcontinent lesser snow geese (Anser caerulescens caerulescens) have potential to alter ecosystems throughout the Arctic and subarctic where they breed. Efforts to understand origins of harvested lesser snow geese to better inform management decisions have traditionally required mark-recapture approaches, while aerial photographic surveys have typically been used to identify breeding distributions. As a potential alternative, isotopic patterns that are metabolically fixed within newly grown flight feathers following summer molting could provide inferences regarding geographic breeding origin of individuals, without the need for prior capture. Our objective was to assess potential to use four stable isotopes …

Mobile Elements Shape Plastome Evolution In Ferns, Tanner A. Robison, Amanda L. Grusz, Paul G. Wolf, Jeffrey P. Mower, Blake D. Fauskee, Karla Sosa, Eric Schuettpelz

Department of Agronomy and Horticulture: Faculty Publications

Plastid genomes display remarkable organizational stability over evolutionary time. From green algae to angiosperms, most plastid genomes are largely collinear, with only a few cases of inversion, gene loss, or, in extremely rare cases, gene addition. These plastome insertions are mostly clade-specific and are typically of nuclear or mitochondrial origin. Here, we expand on these findings and present the first family-level survey of plastome evolution in ferns, revealing a novel suite of dynamic mobile elements. Comparative plastome analyses of the Preridaceae expose several mobile open reading frames that vary in sequence length, insertion site, and configuration among sampled taxa. Even …

A Red List Of Mites From The Suborder Uropodina (Acari: Parasitiformes) In Poland, Agnieszka Napierała, Zofia Książkiewicz‑Parulska, Jerzy Błoszyk

Harold W. Manter Laboratory of Parasitology: Library Materials

This article presents a Red List of mite species from the suborder Uropodina (Acari: Parasitiformes) occurring in Poland. Evaluation of the conservation status of the analyzed species was compiled on the basis of new criteria, which may also be applied to other groups of soil fauna. The authors employ the names of categories proposed by the International Union for Conservation of Nature (IUCN). One of our aims was to review the IUCN criteria to ascertain whether they are applicable in an attempt to assess the danger of extinction of soil invertebrates, and to see whether the criteria can be adapted …

Amphibians And Reptiles Of United States Department Of Defense Installations, Christopher E. Petersen, Robert E. Lovich, Sarah Stallings

United States Navy: Publications

The U.S. Department of Defense (DoD) occupies approximately 10.1 million ha of land within the U.S. spanning most ecosystems contained therein. To date, no comprehensive agency-wide inventory of amphibian and reptile species has been compiled. We developed an amphibian and reptile species inventory for 415 DoD installations/sites and evaluated species diversity. The amphibian and reptile species confirmed present on DoD sites represent 66% of the total native species documented in the continental U.S. Snakes are the most widespread group found on DoD lands. Of the military services, Army sites have the greatest number of confirmed species, federally listed, state-listed, and …

Rural Sense: Value, Heritage, And Sensory Landscapes: Developing A Design-Oriented Approach To Mapping For Healthier Landscapes, Judith Van Der Elst, Heather Richards-Rissetto, Lily Díaz-Kommonen

Department of Anthropology: Faculty Publications

Landscape design needs a novel value system centred on human experience of the landscape rather than simply on economic value. Design-oriented research allows us to shift the focus from mechanistic paradigms towards new sensemaking approaches that value both the sensual and the cognitive in human experience. To move in this direction, we investigate cultural and natural aspects of sensory experience in rural landscapes, arguing that: (1) rural (non-urban) regions offer diverse sensory experiences for optimising human health; and (2) spatial interconnectedness between rural and urban areas means that healthy rural regions are critical for urban development. Our key argument is …

Dry Bean Water Use/Yield Production Function To Estimate Dryland Yields In The U.S. Central High Plain, David C. Nielsen

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Dry edible bean (Phaseolus vulgaris L.) could be used to diversify dryland rotational cropping systems in the U.S. Central High Plains. Dryland production potential of dry bean is undocumented in this region. The objectives of this study were to determine dry bean yield and water use under a range of water availability conditions in order to produce a water use-yield production function and to use that production function in conjunction with long-term precipitation records to estimate average yields and probabilities of attaining given yields. Dry bean was grown over a six-yr period at Akron, CO under a line-source gradient irrigation …

Considerations For Best Practices In Studies Of Fiber Or Other Dietary Components And The Intestinal Microbiome, David M. Klurfeld, Cindy D. Davis, Robert W. Karp, Emma Allen-Vercoe, Eugene B. Chang, Benoit Chassaing, George C. Fahey Jr, Bruce R. Hamaker, Hannah D. Holscher, Johanna W. Lampe, Andre Marette, Eric Martens, Stephen J. O'Keefe, Devin J. Rose, Maria Saarela, Barbara O. Schneeman, Joanne L. Slavin, Justin L. Sonnenburg, Kelly S. Swanson, Gary D. Wu, Christopher J. Lynch

Food for Health: Publications

Considerations for best practices in studies of fiber or other dietary components and the intestinal microbiome. Am J Physiol Endocrinol Metab 315: E1087–E1097, 2018. First published August 21, 2018; doi:10.1152/ajpendo.00058.2018.—A 2-day workshop organized by the National Institutes of Health and U.S. Department of Agriculture included 16 presentations focused on the role of diet in alterations of the gastrointestinal microbiome, primarily that of the colon. Although thousands of research projects have been funded by U.S. federal agencies to study the intestinal microbiome of humans and a variety of animal models, only a minority addresses dietary effects, and a small subset is …

Transcriptomic, Functional, And Network Analyses Reveal Novel Genes Involved In The Interaction Between Caenorhabditis Elegans And Stenotrophomonas Maltophilia, Corin V. White, Michael A. Herman

School of Biological Sciences: Faculty Publications

The bacterivorous nematode Caenorhabditis elegans is an excellent model for the study of innate immune responses to a variety of bacterial pathogens, including the emerging nosocomial bacterial pathogen Stenotrophomonas maltophilia. The study of this interaction has ecological and medical relevance as S. maltophilia is found in association with C. elegans and other nematodes in the wild and is an emerging opportunistic bacterial pathogen. We identified 393 genes that were differentially expressed when exposed to virulent and avirulent strains of S.maltophilia and an avirulent strain of E. coli. We then used a probabilistic functional gene network model (WormNet) to determine …

Global Dynamics Of A Mutualism–Competition Model With One Resource And Multiple Consumers, Yuanshi Wang, Hong Wu, Donald L. Deangelis

United States Geological Survey: Staff Publications

Recent simulation modeling has shown that species can coevolve toward clusters of coexisting consumers exploiting the same limiting resource or resources, with nearly identical ratios of coefficients related to growth and mortality. This paper provides a mathematical basis for such as situation; a full analysis of the global dynamics of a new model for such a class of n-dimensional consumer–resource system, in which a set of consumers with identical growth to mortality ratios compete for the same resource and in which each consumer is mutualistic with the resource. First, we study the system of one resource and two consumers. …

Ability Of Phenolics In Isolation, Components Present In Supina Turf Grass To Remediate Candida Albicans (A72 And Sc5314) Adhesion And Biofilm Formation, Fatima Alessa

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Candida albicans inhabits the gastrointestinal tract dormant commensal member but can become an opportunistic pathogen when the host microflora or immune system is compromised. Adhesion to a biological or synthetic surface, followed by a morphological change from the yeast to hyphae phenotype. Biofilm formation is becoming a common occurrence on types of medical devices. Because C. albicans resistant to commonly available anti-fungal drugs is increasing, innovative treatments are critically needed. Phenolic compounds are promising anti-fungal synergists. Supina grass was used as the complex matrix as it is abundant and highly sustainable source of phytochemicals even though grass cuttings are typically …

Combined Use Of Oscillating Means And Ellipsometry To Determine Uncorrelated Effective Thickness And Optical Constants Of Material Deposited At Or Etched From A Working Electrode That Preferrably Comprises Non - Normal Oriented Nanofibers, Mathias M. Schubert, Tino Hofmann, John A. Woollam, Rebecca Y. Lai

Department of Electrical and Computer Engineering: Faculty Publications

Disclosed are systems and methods that enable determination of uncorrelated thickness of a working electrode and surface region optical constants in settings involving electrochemical processing at a working electrodes in a Piezo electric Balance system , by simultaneous application of an Ellipsometer system , the working electrode optionally having a multiplicity of nanofibers that are oriented non normally to a surface of said working electrode . Further disclosed is , simultaneous with said determinations , the monitoring of electrochemical processes at a piezoelectric balance working electrode driven by electrical energy applied between said working electrode and counter electrode .

Robert James Baker (1942-2018), Obituary, Hugh H. Genoways, Robert D. Bradley, David J. Schmidly, Lisa C. Bradley, James J. Bull, Karen Mcbee, Meredith J. Hamilton, Peter A. Larsen

University of Nebraska State Museum: Mammalogy Papers

First paragraph:

On 30 March 2018, the science of mammalogy and the American Society of Mammalogists lost one of the most influential figures of the last half-century. Robert James Baker died quietly at his home in Lubbock, Texas (Fig. 1). He was born on 8 April 1942 to James Simeon Baker and Laura Cooper in Warren, Arkansas. His father was killed during World War II and his mother remarried, resulting in his growing up with six half-siblings. According to Robert’s autobiography in Going afield (330—number refers to specific publication in “Bibliography”), he spent a good deal of his youth with …

Ancient Convergent Losses Of Paraoxonase 1 Yield Potential Risks For Modern Marine Mammals, Wynn K. Meyer, Jerrica Jamison, Rebecca Richter, Stacy E. Woods, Raghavendran Partha, Amanda Kowalczyk, Charles Kronk, Maria Chikina, Robert K. Bonde, Daniel E. Crocker, Joseph Gaspard, Janet M. Lanyon, Judit Marsillach, Clement E. Furlong, Nathan L. Clark

United States Geological Survey: Staff Publications

Mammals diversified by colonizing drastically different environments, with each transition yielding numerous molecular changes, including losses of protein function. Though not initially deleterious, these losses could subsequently carry deleterious pleiotropic consequences. We have used phylogenetic methods to identify convergent functional losses across independent marine mammal lineages. In one extreme case, Paraoxonase 1 (PON1) accrued lesions in all marine lineages, while remaining intact in all terrestrial mammals. These lesions coincide with PON1 enzymatic activity loss in marine species’ blood plasma. This convergent loss is likely explained by parallel shifts in marine ancestors’ lipid metabolism and/or bloodstream oxidative environment affecting PON1’s role …