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Social Structure Defines Spatial Transmission Of African Swine Fever In Wild Boar, Kim M. Pepin, Andrew J. Golnar, Tomasz Podgórski Jan 2021

Social Structure Defines Spatial Transmission Of African Swine Fever In Wild Boar, Kim M. Pepin, Andrew J. Golnar, Tomasz Podgórski

United States Department of Agriculture Wildlife Services: Staff Publications

The spatial spread of infectious disease is determined by spatial and social processes such as animal space use and family group structure. Yet, the impacts of social processes on spatial spread remain poorly understood and estimates of spatial transmission kernels (STKs) often exclude social structure. Understanding the impacts of social structure on STKs is important for obtaining robust inferences for policy decisions and optimizing response plans. We fit spatially explicit transmission models with different assumptions about contact structure to African swine fever virus surveillance data from eastern Poland from 2014 to 2015 and evaluated how social structure affected inference of …


Occurrence Of Mesocarnivores In Montane Sky Islands: How Spatial And Temporal Overlap Informs Rabies Management In A Regional Hotspot, Amanda M. Veals, John Koprowski, David L. Bergman, Kurt C. Vercauteren, David B. Wester Jan 2021

Occurrence Of Mesocarnivores In Montane Sky Islands: How Spatial And Temporal Overlap Informs Rabies Management In A Regional Hotspot, Amanda M. Veals, John Koprowski, David L. Bergman, Kurt C. Vercauteren, David B. Wester

United States Department of Agriculture Wildlife Services: Staff Publications

Interspecific interactions among mesocarnivores can influence community dynamics and resource partitioning. Insights into these interactions can enhance understanding of local ecological processes that have impacts on pathogen transmission, such as the rabies lyssavirus. Host species ecology can provide an important baseline for disease management strategies especially in biologically diverse ecosystems and heterogeneous landscapes. We used a mesocarnivore guild native to the southwestern United States, a regional rabies hotspot, that are prone to rabies outbreaks as our study system. Gray foxes (Urocyon cinereoargenteus), striped skunks (Mephitis mephitis), bobcats (Lynx rufus), and coyotes (Canis latrans) share large portions of their geographic ranges …


Sars-Cov-2 Exposure In Wild White-Tailed Deer (Odocoileus Virginianus), Jeffrey C. Chandler, Sarah N. Bevins, Jeremy W. Ellis, Timothy J. Linder, Rachel M. Tell, Melinda Jenkins-Moore, J. Jeffrey Root, Julianna B. Lenoch, Suelee Robbe-Austerman, Thomas J. Deliberto, Tom Gidlewski, Mia Kim Torchetti, Susan A. Shriner Jan 2021

Sars-Cov-2 Exposure In Wild White-Tailed Deer (Odocoileus Virginianus), Jeffrey C. Chandler, Sarah N. Bevins, Jeremy W. Ellis, Timothy J. Linder, Rachel M. Tell, Melinda Jenkins-Moore, J. Jeffrey Root, Julianna B. Lenoch, Suelee Robbe-Austerman, Thomas J. Deliberto, Tom Gidlewski, Mia Kim Torchetti, Susan A. Shriner

United States Department of Agriculture Wildlife Services: Staff Publications

Widespread human SARS-CoV-2 infections combined with human–wildlife interactions create the potential for reverse zoonosis from humans to wildlife. We targeted white-tailed deer (Odocoileus virginianus) for serosurveillance based on evidence these deer have angiotensin-converting enzyme 2 receptors with high affinity for SARS-CoV-2, are permissive to infection, exhibit sustained viral shedding, can transmit to conspecifics, exhibit social behavior, and can be abundant near urban centers. We evaluated 624 prepandemic and postpandemic serum samples from wild deer from four US states for SARS-CoV-2 exposure. Antibodies were detected in 152 samples (40%) from 2021 using a surrogate virus neutralization test. A subset of samples …


Armed Conflicts In Outer Space: Which Law Applies?, Frans G. Von Der Dunk Jan 2021

Armed Conflicts In Outer Space: Which Law Applies?, Frans G. Von Der Dunk

Space, Cyber, and Telecommunications Law Program: Faculty Publications

I. Introduction

II. Space Law versus the Law of Armed Conflict ... A. The Essentials of Space Law … B. Space Law and the Threat or Use of Force in Outer Space … C. The Essentials of the Law of Armed Conflict ... D. The Law of Armed Conflict and the Threat or Use of Force in Outer Space

III. Conflicts of Application: A Few Key Examples ... A. Unraveling the Prioritization Issue: The Lex Specialis and Lex Posterior Principles ... B. Unraveling the Prioritization Issue: The U.N. Charter and Treaty Interpretation ... C. Unraveling the Prioritization Issue: Pacta Sunt …


Lgbt Employment Nondiscrimination: Debating Sexuality And Citizenship, Kelsy Burke, Emily Kazyak, Alice Millermacphee Jan 2021

Lgbt Employment Nondiscrimination: Debating Sexuality And Citizenship, Kelsy Burke, Emily Kazyak, Alice Millermacphee

Department of Sociology: Faculty Publications

Introduction — Nebraska is 1 of 26 states that did not protect LGBT people from employment discrimination prior to Bostock vs. Clayton County. This article examines debates in Nebraska about LGBT employment nondiscrimination as a window into how citizenship is defined in relation to sexuality and gender identity.

Methods — We performed qualitative analyses on (1) the 2018 Nebraska Annual Social Indicators Survey of 902 respondents who shared their opinions on employment nondiscrimination legislation for LGBT individuals in close- and open-ended questions and (2) transcripts of the 2017 Nebraska state legislature debate of a bill that would have added …


Recent Advances In Supramolecular Affinity Separations: Affinity Chromatography And Related Methods, Ashley G. Woolfork, Sazia Iftekhar, Susan Ovbude, Kyungah Suh, Sadia Sharmeen, Isaac Kyei, Jacob Jones, David S. Hage Jan 2021

Recent Advances In Supramolecular Affinity Separations: Affinity Chromatography And Related Methods, Ashley G. Woolfork, Sazia Iftekhar, Susan Ovbude, Kyungah Suh, Sadia Sharmeen, Isaac Kyei, Jacob Jones, David S. Hage

David Hage Publications

Contents

1 Introduction

2 Supports for Affinity Chromatography

 2.1 Natural Supports and Related Materials

 2.2 Inorganic Supports

 2.3 Synthetic Supports

 2.4 Magnetic Beads and Particles

 2.5 Smart Materials

 2.6 Nanomaterials

 2.7 Support Formats

3 Immobilization Methods

 3.1 Non-Covalent Immobilization

 3.2 Covalent Immobilization

4 Binding Agents Used in Affinity Chromatography

 4.1 Biological Agents as Affinity Ligands

4.1.1 Immunoaffinity Chromatography

4.1.2 Immunoglobulin-Binding Proteins

4.1.3 Lectins

4.1.4 Enzymes

4.1.5 Serum Proteins

4.1.6 Biotin, Avidin, and Streptavidin

4.1.7 Carbohydrates

4.1.8 Lipids

4.1.9 Nucleic Acids

 4.2 Non-Biological Agents as Affinity Ligands

4.2.1 Boronates and Related Mixed Ligands

4.2.2 Dye-Ligands

4.2.3 Immobilized Metal-Ion Chelates

4.2.4 Molecularly …


Molecular Identification Of Parasites In An Intestinal Coprolite From A Mummified Religious Dignitary Of The Piraino Mother Church Crypt, Sicily, Amanda Rollins, Krystiana Krupa, Georgia Millward, Dario Piombino-Mascali, Karl Reinhard, Frederika Kaestle Jan 2021

Molecular Identification Of Parasites In An Intestinal Coprolite From A Mummified Religious Dignitary Of The Piraino Mother Church Crypt, Sicily, Amanda Rollins, Krystiana Krupa, Georgia Millward, Dario Piombino-Mascali, Karl Reinhard, Frederika Kaestle

Karl Reinhard Publications

Intestinal contents were sampled from a spontaneously enhanced mummy from the Sepulcher of the Priests of the Piraino Mother Church in the Province of Messina, Sicily. This adult male mummy, Piraino 1, is an unidentified religious dignitary dating from the late-18th to mid-19th centuries. Immunological and molecular diagnostics were used to test for common and clinically significant parasites. A morphological diagnosis of Trichuris trichiura (whipworm) was confirmed genetically. A previously undetected Enterobius vermicularis (pinworm) infection was also identified genetically. These data indicate that the Piraino 1 individual was simultaneously infected with multiple intestinal parasite species indicative of poor hygiene. This …


Root And Crown Rot Pathogens Found On Dry Beans Grown In Mozambique, Suzana Vanessa Ismael Fernandes, G. Godoy-Lutz, Celestina Nhagupana Jochua, Carlos A. Urrea, Kent M. Eskridge, James R, Steadman, Joshua Herr Jan 2021

Root And Crown Rot Pathogens Found On Dry Beans Grown In Mozambique, Suzana Vanessa Ismael Fernandes, G. Godoy-Lutz, Celestina Nhagupana Jochua, Carlos A. Urrea, Kent M. Eskridge, James R, Steadman, Joshua Herr

Department of Plant Pathology: Faculty Publications

Dry edible beans are a vital food source in Mozambique, East Africa—one that alleviates hunger and malnutrition and adds value to the economy. In recent years, root/crown rot (RCR) pathogens have emerged as limiting constraints in dry bean production. Not much has been characterized concerning the causal agents of RCR in Mozambique. The purpose of this study was to identify the primary pathogen(s) associated with RCR dry bean samples collected at breeder nursery sites and farmer fields in Mozambique using molecular sequencing and culture-based methods. Sequencing revealed, not surprisingly, an increased diversity of fungal/oomycete operational taxonomic units when compared to …


Lichens And Biofilms: Common Collective Growth Imparts Similar Developmental Strategies, Erin C. Carr, Steven D. Harris, Joshua R. Herr, Wayne Riekhof Jan 2021

Lichens And Biofilms: Common Collective Growth Imparts Similar Developmental Strategies, Erin C. Carr, Steven D. Harris, Joshua R. Herr, Wayne Riekhof

Department of Plant Pathology: Faculty Publications

Lichens are traditionally defined as a symbiotic relationship between fungi and algae and/or cyanobacteria. This union forms a unique structure called the thallus, which attaches to surfaces such as rocks and tree bark. Recent reports challenge the view that lichens are comprised of one fungus and one photobiont, and instead suggest that they are a consortium of microbes. Much of lichen biology remains unknown as most of our knowledge of lichens is limited to morphological characteristics with little to no functional analysis of lichen genes. However, lichens and biofilms share many similar physiological traits which when compared may assist in …


Spring Break Or Heart Break? Extending Valence Bias To Emotional Words, Nicholas R. Harp, Catherine C. Brown, Maital Neta Jan 2021

Spring Break Or Heart Break? Extending Valence Bias To Emotional Words, Nicholas R. Harp, Catherine C. Brown, Maital Neta

Department of Psychology: Faculty Publications

Ambiguous stimuli are useful for assessing emotional bias. For example, surprised faces could convey a positive or negative meaning, and the degree to which an individual interprets these expressions as positive or negative represents their “valence bias.” Currently, the most well- wellvalidated ambiguous stimuli for assessing valence bias include nonverbal signals (faces and scenes), overlooking an inherent ambiguity in verbal signals. This study identified 32 words with dual-valence ambiguity (i.e., relatively high intersubject variability in valence ratings and relatively slow response times) and length-matched clearly valenced words (16 positive, 16 negative). Preregistered analyses demonstrated that the words-based valence bias correlated …


Reappraisal—But Not Suppression—Tendencies Determine Negativity Bias After Laboratory And Real‑World Stress Exposure, Candace M. Raio, Nicholas R. Harp, Catherine C. Brown, Maital Neta Jan 2021

Reappraisal—But Not Suppression—Tendencies Determine Negativity Bias After Laboratory And Real‑World Stress Exposure, Candace M. Raio, Nicholas R. Harp, Catherine C. Brown, Maital Neta

Department of Psychology: Faculty Publications

Higher reactivity to stress exposure is associated with an increased tendency to appraise ambiguous stimuli as negative. However, it remains unknown whether tendencies to use emotion regulation strategies—such as cognitive reappraisal, which involves altering the meaning or relevance of affective stimuli—can shape individual differences regarding how stress affects perceptions of ambiguity. Here, we examined whether increased reappraisal use is one factor that can determine whether stress exposure induces increased negativity bias. In Study 1, healthy participants (n = 43) rated the valence of emotionally ambiguous (surprised) faces before and after an acute stress or control manipulation and reported reappraisal …


A Global Collaboration To Study Intimate Partner Violence-Related Head Trauma: The Enigma Consortium Ipv Working Group, Carrie Esopenko, Jessica Meyer, Elisabeth A. Wilde, Amy D. Marshall, David F. Tate, Alexander P. Lin, Inga K. Koerte, Kimberly B. Werner, Emily L. Dennis, Ashley L. Ware, Nicola L. De Souza, Deleene S. Menefee, Kristen Dams-O’Connor, Dan J. Stein, Erin D. Bigler, Martha E. Shenton, Kathy S. Chiou, Judy L. Postmus, Kathleen Monahan, Brenda Eagan-Johnson, Paul Van Donkelaar, Tricia L. Merkley, Carmen Velez, Cooper B. Hodges, Hannah M. Lindsey, Paula Johnson, Andrei Irimia, Matthew Spruiell, Esther R. Bennett, Ashley Bridwell, Glynnis Zieman, Frank G. Hillary Jan 2021

A Global Collaboration To Study Intimate Partner Violence-Related Head Trauma: The Enigma Consortium Ipv Working Group, Carrie Esopenko, Jessica Meyer, Elisabeth A. Wilde, Amy D. Marshall, David F. Tate, Alexander P. Lin, Inga K. Koerte, Kimberly B. Werner, Emily L. Dennis, Ashley L. Ware, Nicola L. De Souza, Deleene S. Menefee, Kristen Dams-O’Connor, Dan J. Stein, Erin D. Bigler, Martha E. Shenton, Kathy S. Chiou, Judy L. Postmus, Kathleen Monahan, Brenda Eagan-Johnson, Paul Van Donkelaar, Tricia L. Merkley, Carmen Velez, Cooper B. Hodges, Hannah M. Lindsey, Paula Johnson, Andrei Irimia, Matthew Spruiell, Esther R. Bennett, Ashley Bridwell, Glynnis Zieman, Frank G. Hillary

Department of Psychology: Faculty Publications

Intimate partner violence includes psychological aggression, physical violence, sexual violence, and stalking from a current or former intimate partner. Past research suggests that exposure to intimate partner violence can impact cognitive and psychological functioning, as well as neurological outcomes. These seem to be compounded in those who suffer a brain injury as a result of trauma to the head, neck or body due to physical and/or sexual violence. However, our understanding of the neurobehavioral and neurobiological effects of head trauma in this population is limited due to factors including difficulty in accessing/recruiting participants, heterogeneity of samples, and premorbid and comorbid …


Terrestrial Ecological Risk Analysis Via Dietary Exposure At Uranium Mine Sites In The Grand Canyon Watershed (Arizona, Usa), Jo Ellen Hinck, Danielle Cleveland, Bradley E. Sample Jan 2021

Terrestrial Ecological Risk Analysis Via Dietary Exposure At Uranium Mine Sites In The Grand Canyon Watershed (Arizona, Usa), Jo Ellen Hinck, Danielle Cleveland, Bradley E. Sample

United States Geological Survey: Staff Publications

The U.S. Department of the Interior recently included uranium (U) on a list of mineral commodities that are considered critical to economic and national security. The uses of U for commercial and residential energy production, defense applications, medical device technologies, and energy generation for space vehicles and satellites are known, but the environmental impacts of uranium extraction are not always well quantified. We conducted a screening-level ecological risk analysis based on exposure to miningrelated elements via diets and incidental soil ingestion for terrestrial biota to provide context to chemical characterization and exposures at breccia pipe U mines in northern Arizona. …


Detection Of Two Dissimilar Chronic Wasting Disease Isolates In Two Captive Rocky Mountain Elk (Cervus Canadensis) Herds: Two Distinctive Chronic Wasting Disease Isolates Identified In Captive Elk, Tracy A. Nichols, Eric M. Nicholson, Yihui Liu, Wanyin Tao, Terry R. Spraker, Michael Lavelle, Justin W. Fischer, Qingzhong Kong, Kurt C. Vercauteren Jan 2021

Detection Of Two Dissimilar Chronic Wasting Disease Isolates In Two Captive Rocky Mountain Elk (Cervus Canadensis) Herds: Two Distinctive Chronic Wasting Disease Isolates Identified In Captive Elk, Tracy A. Nichols, Eric M. Nicholson, Yihui Liu, Wanyin Tao, Terry R. Spraker, Michael Lavelle, Justin W. Fischer, Qingzhong Kong, Kurt C. Vercauteren

United States Department of Agriculture Wildlife Services: Staff Publications

Chronic wasting disease (CWD) continues to spread in both wild and captive cervid herds in North America and has now been identified in wild reindeer and moose in Norway, Finland and Sweden. There is limited knowledge about the variety and characteristics of isolates or strains of CWD that exist in the landscape and their implications on wild and captive cervid herds. In this study, we evaluated brain samples from two captive elk herds that had differing prevalence, history and timelines of CWD incidence. Site 1 had a 16-year history of CWD with a consistently low prevalence between 5% and 10%. …


Environmental Dna For Conservation, Antoinette J. Piaggio Jan 2021

Environmental Dna For Conservation, Antoinette J. Piaggio

United States Department of Agriculture Wildlife Services: Staff Publications

Biodiversity must be documented before it can be conserved. However, it may be difficult to document species with few individuals (Thompson, 2013; Goldberg et al., 2016), thus it requires a multitude of tools to detect species that occur in low numbers or are elusive (see the various chapters in this volume). One tool that has become useful for conservation efforts utilizes environmental DNA, which is DNA shed into the environment by organisms (eDNA; Taberlet et al., 2018). Typically this involves taking environmental samples such as soil, water, air, or using biological surrogates for sampling biodiversity (e.g. leeches, sponges, carrion flies, …


Allometric Regression Of Snake Body Length From Head Image Measurements, Shane R. Siers Jan 2021

Allometric Regression Of Snake Body Length From Head Image Measurements, Shane R. Siers

United States Department of Agriculture Wildlife Services: Staff Publications

As in many fields of wildlife research and management, camera devices and photogrammetry have become an integral part of the toolkit for exploring otherwise‐unseen aspects of the biology, behavior, and control of the invasive brown treesnake (Boiga irregularis) on Guam. Because brown treesnakes are cryptic and nocturnal, and nearly all aspects of their ecology are influenced by snake size, methods are needed to estimate snake size from images captured by infrared wildlife cameras. Unfortunately, it is difficult to capture images of an entire snake’s length at a controlled distance from a simple camera setup. Here, I describe the …


Increased Abundance Of The Common Raven Within The Ranges Of Greater And Gunnison Sage-Grouse: Influence Of Anthropogenic Subsidies And Fire, Jonathan B. Dinkins, Lindsey R. Perry, Jeffrey L. Beck, Jimmy D. Taylor Jan 2021

Increased Abundance Of The Common Raven Within The Ranges Of Greater And Gunnison Sage-Grouse: Influence Of Anthropogenic Subsidies And Fire, Jonathan B. Dinkins, Lindsey R. Perry, Jeffrey L. Beck, Jimmy D. Taylor

United States Department of Agriculture Wildlife Services: Staff Publications

The common raven (Corvus corax; raven) is native to North America and has increased in abundance, especially throughout western North America, during the last century. Human subsidies have facilitated raven dispersal into less suitable habitats and enabled these populations to maintain higher annual survival and reproduction. Concomitantly, overabundant raven populations are impacting other native at-risk species such as the greater sage-grouse (Centrocercus urophasianus) and potentially the Gunnison sage-grouse (C. minimus). Using Breeding Bird Survey data from 1995–2014, we evaluated raven count data to quantitatively describe changes in abundance and expansion into sagebrush ( …


A Novel Technique To Improve Capture Success Of Common Ravens, Lindsey R. Perry, Terrah M. Owens, Zachary T. Slick, Jimmy Taylor, Jonathan B. Dinkins Jan 2021

A Novel Technique To Improve Capture Success Of Common Ravens, Lindsey R. Perry, Terrah M. Owens, Zachary T. Slick, Jimmy Taylor, Jonathan B. Dinkins

United States Department of Agriculture Wildlife Services: Staff Publications

Traditional trapping techniques for common ravens (Corvus corax; raven) require significant effort, often produce low capture rates, and cannot be used in some situations. We designed a 3-m noose pole to secure ravens from nocturnal roost locations while using a strobe spotlight to temporarily disorient them. We collected measures of trapping efficiency and contrasted them with padded leghold traps also used in the study. We effectively implemented our noose pole method in July and August of 2018, 2019, and 2020 in the Baker and Cow Lakes sage-grouse (Centrocercus urophasianus) Priority Areas of Conservation in eastern Oregon, USA, which yielded trapping …


Nanomaterials In The Environment, Human Exposure Pathway, And Health Effects: A Review, Arindam Malakar, Sushil R. Kanel, Chittaranjan Ray, Daniel D. Snow, Mallikarjuna N. Nadagouda Jan 2021

Nanomaterials In The Environment, Human Exposure Pathway, And Health Effects: A Review, Arindam Malakar, Sushil R. Kanel, Chittaranjan Ray, Daniel D. Snow, Mallikarjuna N. Nadagouda

Daugherty Water for Food Global Institute: Faculty Publications

Nanomaterials (NMs), both natural and synthetic, are produced, transformed, and exported into our environment daily. Natural NMs annual flux to the environment is around 97% of the total and is significantly higher than synthetic NMs. However, synthetic NMs are considered to have a detrimental effect on the environment. The extensive usage of synthetic NMs in different fields, including chemical, engineering, electronics, and medicine, makes them susceptible to be discharged into the atmosphere, various water sources, soil, and landfill waste. As ever-larger quantities of NMs end up in our environment and start interacting with the biota, it is crucial to understand …


Baseflow Nitrate Dynamics Within Nested Watersheds Of An Agricultural Stream In Nebraska, Usa, Galen Richards, Troy E. Gilmore, Aaron R. Mittelstet, Tiffany Messer, Daniel D. Snow Jan 2021

Baseflow Nitrate Dynamics Within Nested Watersheds Of An Agricultural Stream In Nebraska, Usa, Galen Richards, Troy E. Gilmore, Aaron R. Mittelstet, Tiffany Messer, Daniel D. Snow

Daugherty Water for Food Global Institute: Faculty Publications

There is a need to evaluate high surface nitrate concentrations across agricultural watersheds, both spatially and temporally, to increase understanding of source and timing of nitrogen loads in streams and rivers. Bazile Creek is a high-nitrate stream originating in the agriculturally intensive Bazile Groundwater Management Area of Eastern Nebraska, USA. It is a gaining stream that receives groundwater with high nitrate concentrations originating from nonpoint sources. The objective of this study was to determine spatial and temporal variability of baseflow nitrate concentrations in Bazile Creek and its tributaries and to relate this variability to watershed characteristics. Surface-water nitrate samples were …


Surveillance Of Plasticizers, Bisphenol A, Steroids And Caffeine In Surface Water Of River Ganga And Sundarban Wetland Along The Bay Of Bengal: Occurrence, Sources, Estrogenicity Screening And Ecotoxicological Risk Assessment, Paromita Chakraborty, Nancy W. Shappell, Moitraiyee Mukhopadhyay, Sathaporn Onanong, Daniel D. Snow Jan 2021

Surveillance Of Plasticizers, Bisphenol A, Steroids And Caffeine In Surface Water Of River Ganga And Sundarban Wetland Along The Bay Of Bengal: Occurrence, Sources, Estrogenicity Screening And Ecotoxicological Risk Assessment, Paromita Chakraborty, Nancy W. Shappell, Moitraiyee Mukhopadhyay, Sathaporn Onanong, Daniel D. Snow

Daugherty Water for Food Global Institute: Faculty Publications

The transboundary River Ganga serves as a conduit for meltwater from the Himalayas and is a major freshwater source for two thirds of Indian population before emptying into the Sundarban Delta, the largest estuary in the Bay of Bengal. Endocrine disrupting compounds (EDCs) such as phthalic acid esters (PAEs) and bisphenol A (BPA) used as organic plastic additives can pollute the aquatic environment receiving plastic litter. Hence, we have investigated these EDCs in water samples from Ganga and Sundarban wetland of India. Since these compounds exhibit estrogenic potential, we have further measured steroids and evaluated the estrogenic activity (estradiol equivalents, …


Transmission Routes Of The Microbiome And Resistome From Manure To Soil And Lettuce, Yuepeng Sun, Daniel D. Snow, Harkamal Walia, Xu Li Jan 2021

Transmission Routes Of The Microbiome And Resistome From Manure To Soil And Lettuce, Yuepeng Sun, Daniel D. Snow, Harkamal Walia, Xu Li

Daugherty Water for Food Global Institute: Faculty Publications

The land application of animal manure can introduce manure microbiome and resistome to croplands where food crops are grown. The objective of this study was to characterize the microbiome and resistome on and in the leaves of lettuce grown in manured soil and identify the main transmission routes of microbes and antibiotic resistance genes (ARGs) from soil to the episphere and endosphere of lettuce. Shotgun metagenomic results show that manure application significantly altered the composition of the microbiome and resistome of surface soil. SourceTracker analyses indicate that manure and original soil were the main source of the microbiome and resistome …


Identification And Utilization Of Genetic Determinants Of Trait Measurement Errors In Image-Based, High-Throughput Phenotyping, Yan Zhou, Aaron Kusmec, Seyed Vahid Mirnezami, Lakshmi Attigala, Srikant Srinivasan, Talukder Zaki Jubery, James Schnable, Maria G. Salas Fernandez, Baskar Ganapathysubramanian, Patrick S. Schnable Jan 2021

Identification And Utilization Of Genetic Determinants Of Trait Measurement Errors In Image-Based, High-Throughput Phenotyping, Yan Zhou, Aaron Kusmec, Seyed Vahid Mirnezami, Lakshmi Attigala, Srikant Srinivasan, Talukder Zaki Jubery, James Schnable, Maria G. Salas Fernandez, Baskar Ganapathysubramanian, Patrick S. Schnable

Department of Agronomy and Horticulture: Faculty Publications

The accuracy of trait measurements greatly affects the quality of genetic analyses. During automated phenotyping, trait measurement errors, i.e., differences between automatically extracted trait values and ground truth, are often treated as random effects that can be controlled by increasing population sizes and/or replication number. By contrast, there is some evidence that trait measurement errors may be partially under genetic control. Consistent with this hypothesis, we observed substantial non-random, genetic contributions to trait measurement errors for five maize (Zea mays) tassel traits collected using an image-based phenotyping platform. The phenotyping accuracy varied according to whether a tassel exhibited …


Metagenomic Insights Of The Infant Microbiome Community Structure And Function Across Multiple Sites In The United States, Giorgio Casaburi, Rebbeca M. Duar, Heather Brown, Ryan D. Mitchell, Sufyan Kazi, Stephanie Chew, Orla Cagney, Robin L. Flannery, Karl G. Sylvester, Steven A. Frese, Bethany M. Henrick, Samara L. Freeman Jan 2021

Metagenomic Insights Of The Infant Microbiome Community Structure And Function Across Multiple Sites In The United States, Giorgio Casaburi, Rebbeca M. Duar, Heather Brown, Ryan D. Mitchell, Sufyan Kazi, Stephanie Chew, Orla Cagney, Robin L. Flannery, Karl G. Sylvester, Steven A. Frese, Bethany M. Henrick, Samara L. Freeman

Department of Food Science and Technology: Faculty Publications

The gut microbiome plays an important role in early life, protecting newborns from enteric pathogens, promoting immune system development and providing key functions to the infant host. Currently, there are limited data to broadly assess the status of the US healthy infant gut microbiome. To address this gap, we performed a multi-state metagenomic survey and found high levels of bacteria associated with enteric inflammation (e.g. Escherichia, Klebsiella), antibiotic resistance genes, and signatures of dysbiosis, independent of location, age, and diet. Bifidobacterium were less abundant than generally expected and the species identified, including B. breve, B. longum and B. bifidum, had …


Incidence Of Aflatoxins And Fumonisins In Grain, Masa And Corn Tortillas In Four Municipalities In The Department Of Lempira, Honduras, Jeimy Cabrera-Meraz, Luis Maldonado, Andreia Bianchini, Raúl Espinal Jan 2021

Incidence Of Aflatoxins And Fumonisins In Grain, Masa And Corn Tortillas In Four Municipalities In The Department Of Lempira, Honduras, Jeimy Cabrera-Meraz, Luis Maldonado, Andreia Bianchini, Raúl Espinal

Department of Food Science and Technology: Faculty Publications

In Honduras, corn is the most important staple food for the majority of the population. This high-demand crop is susceptible to biological contamination with mycotoxins, which could represent a latent hazard for consumers. To assess the incidence of aflatoxins and fumonisins in grain, masa and tortilla, and the dietary exposure to these substances among consumers, a study was conducted in four municipalities in the department of Lempira. Total aflatoxin and fumonisin content were quantified by fluorometry in 144 samples from 48 farmers. Sixty five percent of the samples were contaminated with aflatoxins with levels of 1.28–32.05, 1.15 to 12.61, and …


Biodiversity Of The Coccidia (Apicomplexa: Conoidasida) In Vertebrates: What We Know, What We Do Not Know, And What Needs To Be Done, Donald W. Duszynski Jan 2021

Biodiversity Of The Coccidia (Apicomplexa: Conoidasida) In Vertebrates: What We Know, What We Do Not Know, And What Needs To Be Done, Donald W. Duszynski

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Over the last two decades my colleagues and I have assembled the literature on a good percentage of most of the coccidians (Conoidasida) known, to date, to parasitise: Amphibia, four major lineages of Reptilia (Amphisbaenia, Chelonia, Crocodylia, Serpentes), and seven major orders in the Mammalia (Carnivora, Chiroptera, Lagomorpha, Insectivora, Marsupialia, Primates, Scandentia). These vertebrates, combined, comprise about 15,225 species; only about 899 (5.8%) of them have been surveyed for coccidia and 1,946 apicomplexan valid species names or other forms are recorded in the literature. Based on these compilations and other factors, I extrapolated that there yet may be an additional …


Pheromone Antagonism In Plutella Xylostella (Linnaeus) By Sex Pheromones Of Two Sympatric Noctuid Moths, Fu Min Wang, Zhi Jie Shen, Coby Schal, Junwei J. Zhu, Guo Xin Zhou, Yu Lei Wang, Ji Rui Wang, Jian Yu Deng, Nian Feng Wan Jan 2021

Pheromone Antagonism In Plutella Xylostella (Linnaeus) By Sex Pheromones Of Two Sympatric Noctuid Moths, Fu Min Wang, Zhi Jie Shen, Coby Schal, Junwei J. Zhu, Guo Xin Zhou, Yu Lei Wang, Ji Rui Wang, Jian Yu Deng, Nian Feng Wan

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

BACKGROUND: Responses to sex pheromones are commonly antagonized by pheromone components of closely related species. Pheromone antagonism has not been widely explored for phylogenetically distant species that have completely different pheromone components. Yet, pheromone components of sympatrically occurring species may also interfere with each other even if these species are distantly related. Here, the effects of heterospecific pheromones on electrophysiology (electroantennogram, EAG) and behavioral responses were tested on the diamondback moth Plutella xyloslella (Plutellidae) and two sympatric noctuid moth species, Spodoptera litura and Spodoptera exigua, whose larvae also feed on Brassica crops.

RESULTS: The sex pheromone blend of P. xyloslella, …


Forages For Conservation And Improved Soil Quality, John F. Obrycki, Douglas L. Karlen Jan 2021

Forages For Conservation And Improved Soil Quality, John F. Obrycki, Douglas L. Karlen

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Forages provide several soil benefits, including reduced soil erosion, reduced water runoff, improved soil physical properties, increased soil carbon, increased soil biologic activity, reduced soil salinity, and improved land stabilization and restoration when grown continuously or as part of a crop rotation. Ongoing research and synthesis of knowledge have improved our understanding of how forages alter and protect soil resources, thus providing producers, policymakers, and the general public information regarding which forage crops are best suited for a specific area or use (e.g. hay, grazing or bioenergy feedstock). Forages can be produced in forestland, range, pasture, and cropland settings. These …


Antibacterial Activities Of Nepetalactones Against Public Health-Related Pathogens, Anuradha Ghosh, Enya V. Zhu, Haichuan Wang, Ludek Zurek, Junwei J. Zhu Jan 2021

Antibacterial Activities Of Nepetalactones Against Public Health-Related Pathogens, Anuradha Ghosh, Enya V. Zhu, Haichuan Wang, Ludek Zurek, Junwei J. Zhu

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The antimicrobial activities of (Z,E)- and (E,Z)-nepetalactones, 2 major compositional compounds from the essential oil of catnip (Nepeta cataria), were first discovered from fly larval development media studies with over 98% inhibition of bacterial growth. Further investigation demonstrated inhibition of the growth of various bacterial species of public health significance. Catnip oil showed antibacterial activity against 5 Gram-positive and 9 Gram-negative bacteria. The antimicrobial activity varied among the original essential oil from the plant and its major compositional compounds as a blended mixture or an individual compound. Growth inhibition was observed against 5 Neisseria species, with particularly strong inhibition against …


Low-Level Groundwater Atrazine In High Atrazine Usage Nebraska Counties: Likely Effects Of Excessive Groundwater Abstraction, Moses New-Aaron, Olufemi Abimbola, Raheleh Mohammadi, Oluwaseun Famojuro, Zaeema Naveed, Azar Abadi, Jesse E. Bell, Shannon Bartelt-Hunt, Eleanor G. Rogan Jan 2021

Low-Level Groundwater Atrazine In High Atrazine Usage Nebraska Counties: Likely Effects Of Excessive Groundwater Abstraction, Moses New-Aaron, Olufemi Abimbola, Raheleh Mohammadi, Oluwaseun Famojuro, Zaeema Naveed, Azar Abadi, Jesse E. Bell, Shannon Bartelt-Hunt, Eleanor G. Rogan

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Recent studies observed a correlation between estrogen-related cancers and groundwater atrazine in eastern Nebraska counties. However, the mechanisms of human exposure to atrazine are unclear because low groundwater atrazine concentration was observed in counties with high cancer incidence despite having the highest atrazine usage. We studied groundwater atrazine fate in high atrazine usage Nebraska counties. Data were collected from Quality Assessed Agrichemical Contaminant Nebraska Groundwater, Parameter–Elevation Regressions on Independent Slopes Model (PRISM), and water use databases. Descriptive statistics and cluster analysis were performed. Domestic wells (59%) were the predominant well type. Groundwater atrazine was affected by well depth. Clusters consisting …