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Effect Of Lysozyme Or Antibiotics On Faecal Zoonotic Pathogens In Nursery Pigs, J E. Wells, E. D. Berry, N Kalchayanand, L A. Rampel, M Kim, W. T. Oliver Jan 2015

Effect Of Lysozyme Or Antibiotics On Faecal Zoonotic Pathogens In Nursery Pigs, J E. Wells, E. D. Berry, N Kalchayanand, L A. Rampel, M Kim, W. T. Oliver

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Aims: The objective of this study was to determine the effect of lysozyme and antibiotics on zoonotic pathogen shedding in faeces from nursery pigs housed without and with an indirect disease challenge. Methods and Results: Two replicates of approximately 650 pigs each were weaned and randomly assigned to one of 24 pens in either a nursery room that had been fully disinfected or a nursery room left unclean. Pigs were randomly assigned to control diet (Control), control diet + antibiotics (Antibiotic; chlortetracycline and tiamulin), or control diet + lysozyme (Lysozyme; 100 mg kg ^-1 diet). Rectal swab samples were collected …


Winter Oilseed Production For Biofuel In The U.S. Corn Belt: Opportunities And Limitations, Aaron J. Sindelar, Marty R. Schmer, Russell W. Gesch, Frank Forcella, Carrie A. Eberle, Matthew D. Thom, David W. Archer Jan 2015

Winter Oilseed Production For Biofuel In The U.S. Corn Belt: Opportunities And Limitations, Aaron J. Sindelar, Marty R. Schmer, Russell W. Gesch, Frank Forcella, Carrie A. Eberle, Matthew D. Thom, David W. Archer

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Interest from the U.S. commercial aviation industry and commitments established by the U.S. Navy and Air Force to use renewable fuels has spurred interest in identifying and developing crops for renewable aviation fuel. Concern regarding greenhouse gas emissions associated with land-use change and shifting land grown for food to feedstock production for fuel has encouraged the concept of intensifying current prominent cropping systems through various double cropping strategies. Camelina (Camelina sativa L.) and field pennycress (Thlaspi arvense L.) are two winter oilseed crops that could potentially be integrated into the corn (Zea mays L.)-soybean [(Glycine max …


Purification, Characterization, And Analysis Of The Allergenic Properties Of Myosin Light Chain In Procambarus Clarkii, Yong-Xia Zhang, Heng-Li Chen, Soheila J. Maleki, Min-Jie Cao, Ling-Jing Zhang, Wen-Jin Su, Guang-Ming Liu Jan 2015

Purification, Characterization, And Analysis Of The Allergenic Properties Of Myosin Light Chain In Procambarus Clarkii, Yong-Xia Zhang, Heng-Li Chen, Soheila J. Maleki, Min-Jie Cao, Ling-Jing Zhang, Wen-Jin Su, Guang-Ming Liu

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Myosin light chain (MLC) plays a vital role in cell and muscle functions and has been identified as an allergen in shrimp. In this study, MLC with a molecular mass of 18 kDa was purified from crayfish (Procambarus clarkii) muscle. Its physicochemical characterization showed that the purified MLC is a glycoprotein with 4.3% carbohydrate, highly stable to heat, acid−alkali, and digestion, and weakly retains IgE-binding activity when its secondary structure was altered. Serological assays suggested that conformational epitopes predominate over linear epitopes in the purified MLC. Two isoforms of the MLC gene (MLC1 and MLC2) were …


Triclosan: Current Status, Occurrence, Environmental Risks And Bioaccumulation Potential, Gurpreet Singh Dhillon, Surinder Kaur, Rama Pulicharla, Satinder K. Brar, Maximiliano Cledon, Mausam Verma, Rao Y. Surampalli Jan 2015

Triclosan: Current Status, Occurrence, Environmental Risks And Bioaccumulation Potential, Gurpreet Singh Dhillon, Surinder Kaur, Rama Pulicharla, Satinder K. Brar, Maximiliano Cledon, Mausam Verma, Rao Y. Surampalli

Department of Civil and Environmental Engineering: Faculty Publications

Triclosan (TCS) is a multi-purpose antimicrobial agent used as a common ingredient in everyday household personal care and consumer products. The expanded use of TCS provides a number of pathways for the compound to enter the environment and it has been detected in sewage treatment plant effluents; surface; ground and drinking water. The physico-chemical properties indicate the bioaccumulation and persistence potential of TCS in the environment. Hence, there is an increasing concern about the presence of TCS in the environment and its potential negative effects on human and animal health. Nevertheless, scarce monitoring data could be one reason for not …


Social Contexts Of Infant Feeding And Infant Feeding Decisions, Ellen J. Schafer, Natalie A. Williams, Siri Digney, Marion E. Hare, Sato Ashida Jan 2015

Social Contexts Of Infant Feeding And Infant Feeding Decisions, Ellen J. Schafer, Natalie A. Williams, Siri Digney, Marion E. Hare, Sato Ashida

Department of Child, Youth, and Family Studies: Faculty Publications

Background: Infant feeding takes place within a network of social relationships. However, the social context in which infant feeding advice is received remains underresearched.

Objective: The objective of this study was to evaluate the social contexts of infant feeding by examining individual and relationship characteristics of mothers and network members associated with advice to exclusively breastfeed, exclusively formula feed, or use a combination of breast milk and formula.

Methods: Information about 287 network members was reported by 80 low-income mothers during a one-time survey. Characteristics of relationships associated with mothers receiving advice (exclusively breastfeed/formula feed, combination feed) from each network …


Biogenic Carbon Fluxes From Global Agricultural Production And Consumption, Julie Wolf, Tristram O. West, Yannick Le Page, G. Page Kyle, Xuesong Zhang, G. James Collatz, Marc L. Imhoff Jan 2015

Biogenic Carbon Fluxes From Global Agricultural Production And Consumption, Julie Wolf, Tristram O. West, Yannick Le Page, G. Page Kyle, Xuesong Zhang, G. James Collatz, Marc L. Imhoff

United States National Aeronautics and Space Administration: Publications

Quantification of biogenic carbon fluxes from agricultural lands is needed to generate comprehensive bottom-up estimates of net carbon exchange for global and regional carbon monitoring. We estimated global agricultural carbon fluxes associated with annual crop net primary production (NPP), harvested biomass, and consumption of biomass by humans and livestock. These estimates were combined for a single estimate of net carbon exchange and spatially distributed to 0.05° resolution usingModerate Resolution Imaging Spectroradiometer satellite land cover data. Global crop NPP in 2011 was estimated at 5.25 ± 0.46 Pg C yr-1, of which 2.05 ± 0.05 Pg C yr-1 …


Developmental Biology And Effects Of Adult Diet On Consumption, Longevity, And Fecundity Of Colaspis Crinicornis (Coleoptera: Chrysomelidae), Kentaro Miwa, Lance Meinke Jan 2015

Developmental Biology And Effects Of Adult Diet On Consumption, Longevity, And Fecundity Of Colaspis Crinicornis (Coleoptera: Chrysomelidae), Kentaro Miwa, Lance Meinke

Department of Entomology: Faculty Publications

The chrysomelid beetle Colaspis crinicornis Schaeffer (Coleoptera: Chrysomelidae) occurs primarily in the Great Plains region of the United States. Little is known about the biology and ecology of this species, but over the last decade, it has become increasingly common in the corn, Zea mays L., and soybean, Glycine max (L.) Merrill, agroecosystem of southeastern Nebraska. As part of a larger comprehensive project to understand the natural history and pest potential of this species, laboratory experiments were conducted to study the developmental biology, morphological characters of immature stages, and the effect of adult diet on consumption, longevity, and fecundity. Females …


Ethylene Contributes To Maize Insect Resistance1-Mediated Maize Defense Against The Phloem Sap-Sucking Corn Leaf Aphid, Joe Louis, Saumik Basu, Suresh Varsani, Lina Castano-Duque, Victoria Jiang, W. Paul Williams, Gary W. Felton, Dawn S. Luthe Jan 2015

Ethylene Contributes To Maize Insect Resistance1-Mediated Maize Defense Against The Phloem Sap-Sucking Corn Leaf Aphid, Joe Louis, Saumik Basu, Suresh Varsani, Lina Castano-Duque, Victoria Jiang, W. Paul Williams, Gary W. Felton, Dawn S. Luthe

Department of Entomology: Faculty Publications

Signaling networks among multiple phytohormones fine-tune plant defense responses to insect herbivore attack. Previously, it was reported that the synergistic combination of ethylene (ET) and jasmonic acid (JA) was required for accumulation of the maize insect resistance1 (mir1) gene product, a cysteine (Cys) proteinase that is a key defensive protein against chewing insect pests in maize (Zea mays). However, this study suggests that mir1-mediated resistance to corn leaf aphid (CLA; Rhopalosiphum maidis), a phloem sap-sucking insect pest, is independent of JA but regulated by the ET-signaling pathway. Feeding by CLA triggers the rapid accumulation of mir1 transcripts in the resistant …


Morphology And Proteome Characterization Of The Salivary Glands Of The Western Chinch Bug (Hemiptera: Blissidae), Crystal Ramm, Astri Wayadande, Lisa Baird, Renu Nandakumar, Nandakumar Madayiputhiya, Keenan Amundsen, Teresa Donze-Reiner, Frederick Baxendale, Gautam Sarath, Tiffany Heng-Moss Jan 2015

Morphology And Proteome Characterization Of The Salivary Glands Of The Western Chinch Bug (Hemiptera: Blissidae), Crystal Ramm, Astri Wayadande, Lisa Baird, Renu Nandakumar, Nandakumar Madayiputhiya, Keenan Amundsen, Teresa Donze-Reiner, Frederick Baxendale, Gautam Sarath, Tiffany Heng-Moss

Department of Entomology: Faculty Publications

The western chinch bug, Blissus occiduus Barber, is a serious pest of buffalograss, Buchloe dactyloides (Nuttall) due to physical and chemical damage caused during the feeding process. Although previous work has investigated the feeding behaviors of chinch bugs in the Blissus complex, no study to date has explored salivary gland morphology and the associated salivary complex of this insect. Whole and sectioned B. occiduus salivary glands were visualized using light and scanning electron microscopy to determine overall structure and cell types of the salivary glands and their individual lobes. Microscopy revealed a pair of trilobed principal glands and a pair …


Transcriptional Responses Of Tolerant And Susceptible Soybeans To Soybean Aphid (Aphis Glycines Matsumura) Herbivory, Travis J. Prochaska, Teresa Donze-Reiner, L. Marchi-Werle, N. A. Palmer, Thomas E. Hunt, Gautam Sarath, Tiffany Heng-Moss Jan 2015

Transcriptional Responses Of Tolerant And Susceptible Soybeans To Soybean Aphid (Aphis Glycines Matsumura) Herbivory, Travis J. Prochaska, Teresa Donze-Reiner, L. Marchi-Werle, N. A. Palmer, Thomas E. Hunt, Gautam Sarath, Tiffany Heng-Moss

Department of Entomology: Faculty Publications

The soybean aphid, Aphis glycines Matsumura, was introduced in 2000 to North America and has become one of the most significant pests to soybean, Glycine max (L.) Merrill, production. Possible solutions to this problem are the use of resistant plants and the understanding of the genes involved in plant resistance. In this study, we sought to better understand the genes involved in the tolerance response of soybean plants to the soybean aphid, utilizing tolerant (KS4202) and susceptible (K-03-4686) plants. Studies were conducted under greenhouse conditions. Leaf samples of both tolerant and susceptible plants were collected at day 5 and day …


Planting Date And Variety Selection For Management Of Viruses Transmitted By The Wheat Curl Mite (Acari: Eriophyidae), Anthony J. Mcmechan, Gary Hein Jan 2015

Planting Date And Variety Selection For Management Of Viruses Transmitted By The Wheat Curl Mite (Acari: Eriophyidae), Anthony J. Mcmechan, Gary Hein

Department of Entomology: Faculty Publications

Wheat is an important food grain worldwide, and it is the primary dryland crop in the western Great Plains. A complex of three viruses (Wheat streak mosaic, Wheat mosaic, and Triticum mosaic viruses) is a common cause of loss in winter wheat production in the Great Plains. All these viruses are transmitted by the wheat curl mite (Aceria tosichella Keifer). Once these viruses are established, there are no curative actions; therefore, prevention is the key to successful management. A study was designed to evaluate preventative management tactics (planting date, resistant varieties) for reducing the impact from this virus complex. …


On-Plant Larval Movement And Feeding Behavior Of Fall Armyworm (Lepidoptera: Noctuidae) On Reproductive Corn Stages, Luiz E. R. Pannuti, Edson L. L. Baldin, Thomas E. Hunt, Silvana L. Vieira De Paula Moraes Jan 2015

On-Plant Larval Movement And Feeding Behavior Of Fall Armyworm (Lepidoptera: Noctuidae) On Reproductive Corn Stages, Luiz E. R. Pannuti, Edson L. L. Baldin, Thomas E. Hunt, Silvana L. Vieira De Paula Moraes

Department of Entomology: Faculty Publications

Spodoptera frugiperda J.E. Smith (fall armyworm) is considered one of the most destructive pests of corn throughout the Americas. Although this pest has been extensively studied, little is known about its larval movement and feeding behavior on reproductive compared to vegetative corn stages. Thus, we conducted studies with two corn stages (R1 and R3) and four corn plant zones (tassel, above ear, ear zone, and below ear) in the field at Concord, NE (USA), and in the field and greenhouse at Botucatu, SP (Brazil), to investigate on-plant larval movement. The effects of different corn tissues (opened tassel, …


Impact Of Spodoptera Frugiperda Neonate Pretreatment Conditions On Vip3aa19 Insecticidal Protein Activity And Laboratory Bioassay Variation, Karen F. Da Silva, Terence A. Spencer, Carolina Camargo Gil, Blair D. Siegfried, Frederick S. Walters Jan 2015

Impact Of Spodoptera Frugiperda Neonate Pretreatment Conditions On Vip3aa19 Insecticidal Protein Activity And Laboratory Bioassay Variation, Karen F. Da Silva, Terence A. Spencer, Carolina Camargo Gil, Blair D. Siegfried, Frederick S. Walters

Department of Entomology: Faculty Publications

BACKGROUND: Variation in response to insecticidal proteins is common upon repetition of insect bioassays. Understanding this variation is a prerequisite to detecting biologically important differences.We tracked neonate Spodoptera frugiperda (J.E. Smith) susceptibility to Vip3Aa19 over 17 generations using standardized bioassay methods. Five larval pretreatment conditions and one bioassay condition were tested to determine whether susceptibility was affected. These included: storage time; prefeeding; storage at reduced temperature; storage at reduced humidity; colony introgression of field-collected individuals. Extremes of photoperiod during the bioassay itself were also examined.

RESULTS: LC50 values for two strains of S. frugiperda varied 6.6-fold or 8.8-fold over …


Patterns Of Differential Gene Expression In Adult Rotation-Resistant And Wild-Type Western Corn Rootworm Digestive Tracts, Chia-Ching Chu, Jorge A. Zavala, Joseph L. Spencer, Matías J. Curzi, Christopher J. Fields, Jenny Drnevich, Blair D. Siegfried, Manfredo J. Seufferheld Jan 2015

Patterns Of Differential Gene Expression In Adult Rotation-Resistant And Wild-Type Western Corn Rootworm Digestive Tracts, Chia-Ching Chu, Jorge A. Zavala, Joseph L. Spencer, Matías J. Curzi, Christopher J. Fields, Jenny Drnevich, Blair D. Siegfried, Manfredo J. Seufferheld

Department of Entomology: Faculty Publications

The western corn rootworm (WCR, Diabrotica virgifera virgifera LeConte) is an important pest of corn. Annual crop rotation between corn and soybean disrupts the corn-dependent WCR life cycle and is widely adopted to manage this pest. This strategy selected for rotation-resistant (RR) WCR with reduced ovipositional fidelity to corn. Previous studies revealed that RR-WCR adults exhibit greater tolerance of soybean diets, different gut physiology, and host–microbe interactions compared to rotation-susceptible wild types (WT). To identify the genetic mechanisms underlying these phenotypic changes, a de novo assembly of the WCR adult gut transcriptome was constructed and used for RNA-sequencing analyses of …


Human Absorbable Microrna Prediction Based On An Ensemble Manifold Ranking Model, Jiang Shu, Kevin Chiang, Dongyu Zhao, Juan Cui Jan 2015

Human Absorbable Microrna Prediction Based On An Ensemble Manifold Ranking Model, Jiang Shu, Kevin Chiang, Dongyu Zhao, Juan Cui

School of Computing: Faculty Publications

MicroRNAs, a class of short non-coding RNAs, are able to regulate more than half of human genes and affect many fundamental biological processes. It has been long considered synthesized endogenously until very recent discoveries showing that human can absorb exogenous microRNAs from dietary resources. This finding has raised a challenge scientific question: which exogenous microRNAs can be integrated into human circulation and possibly exert functions in human? Here we present a well-designed ensemble manifold ranking model for identifying human absorbable exogenous miRNAs from 14 common dietary species. Specifically, we have analyzed 4,910 dietary microRNAs with 1,120 features derived based on …


Salmonella Enterica Serovar Typhimurium-Infected Pigs With Different Shedding Levels Exhibit Distinct Clinical, Peripheral Cytokine And Transcriptomic Immune Response Phenotypes, Susan M. Knetter, Shawn M. D. Bearson, Ting-Hua Huang, Dason Kurkiewicz, Martine Schroyen, Dan Nettleton, Daniel Berman, Valerie Cohen, Joan K. Lunney, Amanda E. Ramer-Tait, Michael J. Wannemuehler, Christopher K. Tuggle Jan 2015

Salmonella Enterica Serovar Typhimurium-Infected Pigs With Different Shedding Levels Exhibit Distinct Clinical, Peripheral Cytokine And Transcriptomic Immune Response Phenotypes, Susan M. Knetter, Shawn M. D. Bearson, Ting-Hua Huang, Dason Kurkiewicz, Martine Schroyen, Dan Nettleton, Daniel Berman, Valerie Cohen, Joan K. Lunney, Amanda E. Ramer-Tait, Michael J. Wannemuehler, Christopher K. Tuggle

Department of Food Science and Technology: Faculty Publications

Foodborne salmonellosis costs the US $2.7 billion/year, including $100.0 million in annual losses to pork producers. Pigs colonized with Salmonella are usually asymptomatic with varied severity and duration of fecal shedding. Thus, understanding the responses that result in less shedding may provide a mechanism for control. Fifty-four pigs were inoculated with Salmonella enterica serovar Typhimurium (ST) and clinical signs, fecal ST shedding, growth performance, peripheral cytokines and whole blood gene expression were measured. Persistently shedding (PS) pigs had longer pyrexia and elevated serum IL-1b, TNF-a and IFN-g compared with low shedding (LS) pigs, while LS pigs had brief pyrexia, less …


Sourdough Lactic Acid Bacteria As Antifungal And Mycotoxin-Controlling Agents, Yousef I. Hassan, Ting Zhou, Lloyd B. Bullerman Jan 2015

Sourdough Lactic Acid Bacteria As Antifungal And Mycotoxin-Controlling Agents, Yousef I. Hassan, Ting Zhou, Lloyd B. Bullerman

Department of Food Science and Technology: Faculty Publications

Sourdough starter cultures are rich sources of endogenous lactic acid bacteria. The extended shelf lives of sourdough breads are attributed to a large array of organic acids and low-molecular-weight metabolites produced during the fermentation process. Different species belonging to the lactic acid bacteria group of microorganisms, mainly Lactobacillus and Leuconostoc, are increasingly gaining the attention as possible means for inhibiting mold growth in animal feed and human food chains. In addition, certain lactic acid bacteria strains isolated from sourdough starters were also shown to reduce mycotoxins concentrations in contaminated products either by binding or degradation. This short review will …


Processing Effects On Four Prebiotic Carbohydrates Supplemented In An Extruded Cereal And A Low Ph Drink, Rebbeca M. Duar, Pei Tze Ang, Michelle Hoffman, Randy Wehling, Robert W. Hutkins, Vicki Schlegel Jan 2015

Processing Effects On Four Prebiotic Carbohydrates Supplemented In An Extruded Cereal And A Low Ph Drink, Rebbeca M. Duar, Pei Tze Ang, Michelle Hoffman, Randy Wehling, Robert W. Hutkins, Vicki Schlegel

Department of Food Science and Technology: Faculty Publications

Prebiotic carbohydrates are added as functional ingredients to a variety of processed foods. Data on the stability of prebiotics during food processing in complex matrices remain limited. The objective of this project was to determine the stability of fructooligosaccharides (FOS), inulin, galactooligosaccharides (GOS), and resistant starch (RS2), when added as ingredients (1% w/w) to an extruded cereal and a low pH drink. The cereal was prepared using different screw speeds and barrel temperatures. GOS was not affected by any of the extrusion conditions, whereas inulin decreased significantly at 140 and 170°C. FOS levels decreased in all extrusion conditions, …


In Vivo Selection To Identify Bacterial Strains With Enhanced Ecological Performance In Synbiotic Applications, Janina A. Krumbeck, Maria X. Maldonado-Gomez, Ines Martınez, Steven Frese, Thomas E. Burkey, Karuna Rasineni, Amanda E. Ramer-Tait, Edward N. Harris, Robert W. Hutkins, Jens Walter Jan 2015

In Vivo Selection To Identify Bacterial Strains With Enhanced Ecological Performance In Synbiotic Applications, Janina A. Krumbeck, Maria X. Maldonado-Gomez, Ines Martınez, Steven Frese, Thomas E. Burkey, Karuna Rasineni, Amanda E. Ramer-Tait, Edward N. Harris, Robert W. Hutkins, Jens Walter

Department of Food Science and Technology: Faculty Publications

One strategy for enhancing the establishment of probiotic bacteria in the human intestinal tract is via the parallel administration of a prebiotic, which is referred to as a synbiotic. Here we present a novel method that allows a rational selection of putative probiotic strains to be used in synbiotic applications: in vivo selection (IVS). This method consists of isolating candidate probiotic strains from fecal samples following enrichment with the respective prebiotic. To test the potential of IVS, we isolated bifidobacteria from human subjects who consumed increasing doses of galactooligosaccharides (GOS) for 9 weeks. A retrospective analysis of the fecal microbiota …


Sandwich Enzyme-Linked Immunosorbent Assay For Detecting Sesame Seed In Foods, Stef J. Koppelman, Gülsen Söylemez, Lynn Niemann, Ferdelie E. Gaskin, Joseph L. Baumert, Steve L. Taylor Jan 2015

Sandwich Enzyme-Linked Immunosorbent Assay For Detecting Sesame Seed In Foods, Stef J. Koppelman, Gülsen Söylemez, Lynn Niemann, Ferdelie E. Gaskin, Joseph L. Baumert, Steve L. Taylor

Department of Food Science and Technology: Faculty Publications

Small amounts of sesame can trigger allergic reactions in sesame-allergic patients. Because sesame is a widely used food ingredient, analytical methods are needed to support quality control and food safety programs in the food industry. In this study, polyclonal antibodies against sesame seed proteins were raised, and an enzyme-linked immunosorbent assay (ELISA) was developed for the detection and quantification of sesame seed residue in food. A comparison was made between this ELISA and other assays, particularly focusing on recovery of sesame seed residue from different food matrices. The developed ELISA is sensitive with a lower limit of quantification of 0.5 …


Food Processing And Allergenicity, Kitty C. M. Verhoeckx, Yvonne M. Vissers, Joseph L. Baumert, Roland Faludi, Marcel Feys, Simon Flanagan, Corinne Herouet-Guicheney, Thomas Holzhauser, Ryo Shimojo, Nieke Van Der Bolt, Harry Wichers, Ian Kimber Jan 2015

Food Processing And Allergenicity, Kitty C. M. Verhoeckx, Yvonne M. Vissers, Joseph L. Baumert, Roland Faludi, Marcel Feys, Simon Flanagan, Corinne Herouet-Guicheney, Thomas Holzhauser, Ryo Shimojo, Nieke Van Der Bolt, Harry Wichers, Ian Kimber

Department of Food Science and Technology: Faculty Publications

Food processing can have many beneficial effects. However, processing may also alter the allergenic properties of food proteins. A wide variety of processing methods is available and their use depends largely on the food to be processed.

In this review the impact of processing (heat and non-heat treatment) on the allergenic potential of proteins, and on the antigenic (IgG-binding) and allergenic (IgE-binding) properties of proteins has been considered. A variety of allergenic foods (peanuts, tree nuts, cows’ milk, hens’ eggs, soy, wheat and mustard) have been reviewed.

The overall conclusion drawn is that processing does not completely abolish the allergenic …


The Microbiome Of Uncontacted Amerindians, Jose C. Clemente, Erica C. Pehrsson, Martin J. Blaser, Kuldip Sandhu, Zhan Gao, Bin Wang, Magda Magris, Glida Hidalgo, Monica Contreras, Óscar Noya-Alarcón, Orlana Lander, Jeremy Mcdonald, Mike Cox, Jens Walter, Phaik Lyn Oh, Jean F. Ruiz, Selena Rodriguez, Nan Shen, Se Jin Song, Jessica Metcalf, Rob Knight, Gautam Dantas, M. Gloria Dominguez-Bello Jan 2015

The Microbiome Of Uncontacted Amerindians, Jose C. Clemente, Erica C. Pehrsson, Martin J. Blaser, Kuldip Sandhu, Zhan Gao, Bin Wang, Magda Magris, Glida Hidalgo, Monica Contreras, Óscar Noya-Alarcón, Orlana Lander, Jeremy Mcdonald, Mike Cox, Jens Walter, Phaik Lyn Oh, Jean F. Ruiz, Selena Rodriguez, Nan Shen, Se Jin Song, Jessica Metcalf, Rob Knight, Gautam Dantas, M. Gloria Dominguez-Bello

Department of Food Science and Technology: Faculty Publications

Most studies of the human microbiome have focused on westernized people with life-style practices that decrease microbial survival and transmission, or on traditional societies that are currently in transition to westernization. We characterize the fecal, oral, and skin bacterial microbiome and resistome of members of an isolated Yanomami Amerindian village with no documented previous contact with Western people. These Yanomami harbor a microbiome with the highest diversity of bacteria and genetic functions ever reported in a human group. Despite their isolation, presumably for >11,000 years since their ancestors arrived in South America, and no known exposure to antibiotics, they harbor …


Stalk Strenght And Sugar Content Of 55 Dual-Purpose Sorghum Inbreds, S. F. Chen, M.-G. C. Danao, P. J. Brown Jan 2015

Stalk Strenght And Sugar Content Of 55 Dual-Purpose Sorghum Inbreds, S. F. Chen, M.-G. C. Danao, P. J. Brown

Department of Food Science and Technology: Faculty Publications

In 2012, sorghum was approved by the U.S. Environmental Protection Agency (EPA) as an “advanced” bioenergy feedstock in cases where both the grain and stover are both used for energy production (USEPA, 2012). It is desirable, therefore, to develop taller varieties of sorghum to increase biomass yields. However the taller the plant gets, the more susceptible it becomes to lodging, reducing grain yield in the end. Additionally the ability to characterize the storage stability of new sorghum varieties in terms of moisture content and free sugars content is advantageous. In this study, high throughput assays to characterize stalk strength based …


Metagenomics For Bacteriology, Erika Del Castillo, Jacques Izard Jan 2015

Metagenomics For Bacteriology, Erika Del Castillo, Jacques Izard

Department of Food Science and Technology: Faculty Publications

The study of bacteria, or bacteriology, has gone through transformative waves since its inception in the 1600s. It all started by the visualization of bacteria using light microscopy by Antonie van Leeuwenhoek, when he first described “animalcules.” Direct cellular observation then evolved into utilizing different wavelengths on novel platforms such as electron, fluorescence, and even near-infrared microscopy. Understanding the link between microbes and disease (pathogenicity) began with the ability to isolate and cultivate organisms through aseptic methodologies starting in the 1700s. These techniques became more prevalent in the following centuries with the work of famous scientists such as Louis Pasteur …


Promises And Prospects Of Microbiome Studies, Maria C. Rivera, Jacques Izard Jan 2015

Promises And Prospects Of Microbiome Studies, Maria C. Rivera, Jacques Izard

Department of Food Science and Technology: Faculty Publications

Since Anthony van Leeuwenhoek, first microscopic observations of the unseen microbiota and the more recent realization that little of the microbes in the biosphere are known, humans have developed a deep curiosity to fully understand the inner workings of the microbial realm. Our ability to characterize the complexity of microbial communities in their natural habitats has dramatically improved over the past decade thanks to advances in high-throughput methodologies. By eliminating the need to isolate and culture individual species, metagenomics approaches have removed many of the obstacles that hindered research in the ecology of mixed microbial consortia, providing valuable information about …


Genetic And Molecular Characterization Of Submergence Response Identifies Subtol6 As A Major Submergence Tolerance Locus In Maize, Malachy T. Campbell, Christopher A. Proctor, Yongchao Dou, Aaron J. Schmitz, Piyaporn Phansak, Greg R. Kruger, Chi Zhang, Harkamal Walia Jan 2015

Genetic And Molecular Characterization Of Submergence Response Identifies Subtol6 As A Major Submergence Tolerance Locus In Maize, Malachy T. Campbell, Christopher A. Proctor, Yongchao Dou, Aaron J. Schmitz, Piyaporn Phansak, Greg R. Kruger, Chi Zhang, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Maize is highly sensitive to short term flooding and submergence. Early season flooding reduces germination, survival and growth rate of maize seedlings. We aimed to discover genetic variation for submergence tolerance in maize and elucidate the genetic basis of submergence tolerance through transcriptional profiling and linkage analysis of contrasting genotypes. A diverse set of maize nested association mapping (NAM) founder lines were screened, and two highly tolerant (Mo18Wand M162W) and sensitive (B97 and B73) genotypes were identified. Tolerant lines exhibited delayed senescence and lower oxidative stress levels compared to sensitive lines. Transcriptome analysis was performed on these inbreds to provide …


Qtl For Seed Protein And Amino Acids In The Benning × Danbaekkong Soybean Population, C. V. Warrington, H. Abdel‑Haleem, D. L. Hyten, P. B. Cregan, J. H. Orf, A. S. Killam, N. Bajjalieh, Z. Li, H. R. Boerma Jan 2015

Qtl For Seed Protein And Amino Acids In The Benning × Danbaekkong Soybean Population, C. V. Warrington, H. Abdel‑Haleem, D. L. Hyten, P. B. Cregan, J. H. Orf, A. S. Killam, N. Bajjalieh, Z. Li, H. R. Boerma

Department of Agronomy and Horticulture: Faculty Publications

Soybean, rather than nitrogen-containing forages, is the primary source of quality protein in feed formulations for domestic swine, poultry, and dairy industries. As a sole dietary source of protein, soybean is deficient in the amino acids lysine (Lys), threonine (Thr), methionine (Met), and cysteine (Cys). Increasing these amino acids would benefit the feed industry. The objective of the present study was to identify quantitative trait loci (QTL) associated with crude protein (cp) and amino acids in the ‘Benning’ × ‘Danbaekkong’ population. The population was grown in five southern USA environments. Amino acid concentrations as a fraction of cp (Lys/cp, Thr/cp, …


Proteomic Profiling Of Maize Opaque Endosperm Mutants Reveals Selective Accumulation Of Lysine-Enriched Proteins, Kyla J. Morton, Shangang Jia, Chi Zhang, David R. Holding Jan 2015

Proteomic Profiling Of Maize Opaque Endosperm Mutants Reveals Selective Accumulation Of Lysine-Enriched Proteins, Kyla J. Morton, Shangang Jia, Chi Zhang, David R. Holding

Department of Agronomy and Horticulture: Faculty Publications

Reduced prolamin (zein) accumulation and defective endoplasmic reticulum (ER) body formation occurs in maize opaque endosperm mutants opaque2 (o2), floury2 (fl2), defective endosperm*B30 (DeB30), and Mucronate (Mc), whereas other opaque mutants such as opaque1 (o1) and floury1 (fl1) are normal in these regards. This suggests that other factors contribute to kernel texture. A liquid chromatography approach coupled with tandem mass spectrometry (LC-MS/MS) proteomics was used to compare non-zein proteins of nearly isogenic opaque endosperm mutants. In total, 2762 proteins were identified that were enriched for biological processes such as protein transport and folding, amino acid biosynthesis, …


Tonoplast Sugar Transporters (Sbtsts) Putatively Control Sucrose Accumulation In Sweet Sorghum Stems, Saadia Bihmidine, Benjamin T. Julius, Ismail M. Dweikat, David M. Braun Jan 2015

Tonoplast Sugar Transporters (Sbtsts) Putatively Control Sucrose Accumulation In Sweet Sorghum Stems, Saadia Bihmidine, Benjamin T. Julius, Ismail M. Dweikat, David M. Braun

Department of Agronomy and Horticulture: Faculty Publications

Carbohydrates are differentially partitioned in sweet versus grain sorghums. While the latter preferentially accumulate starch in the grain, the former primarily store large amounts of sucrose in the stem. Previous work determined that neither sucrose metabolizing enzymes nor changes in Sucrose transporter (SUT) gene expression accounted for the carbohydrate partitioning differences. Recently, 2 additional classes of sucrose transport proteins, Tonoplast Sugar Transporters (TSTs) and SWEETs, were identified; thus, we examined whether their expression tracked sucrose accumulation in sweet sorghum stems. We determined 2 TSTs were differentially expressed in sweet vs. grain sorghum stems, likely underlying the massive difference in sucrose …


A Sustainable Slashing Industry Using Biodegradable Sizes From Modified Soy Protein To Replace Petro-Based Poly(Vinyl Alcohol), Yi Zhao, Yuzhu Zhao, Helan Xu, Yiqi Yang Jan 2015

A Sustainable Slashing Industry Using Biodegradable Sizes From Modified Soy Protein To Replace Petro-Based Poly(Vinyl Alcohol), Yi Zhao, Yuzhu Zhao, Helan Xu, Yiqi Yang

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Biodegradable sizing agents from triethanolamine (TEA) modified soy protein could substitute poly(vinyl alcohol)(PVA) sizes for high-speed weaving of polyester and polyester/cotton yarns to substantially decrease environmental pollution and impel sustainability of textile industry. Nonbiodegradable PVA sizes are widely used and mainly contribute to high chemical oxygen demand (COD) in textile effluents. It has not been possible to effectively degrade, reuse or replace PVA sizes so far. Soy protein with good biodegradability showed potential as warp sizes in our previous studies. However, soy protein sizes lacked film flexibility and adhesion for required high-speed weaving. Additives with multiple hydroxyl groups, nonlinear molecule, …