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Black Bear, Jimmy D. Taylor, James P. Phillips

Wildlife Damage Management Technical Series

The American black bear (Ursus americanus, Figure 1) is a challenging species for wildlife agencies to manage due to its size, intelligence, extensive range, food habits, and adaptability, as well as societal views. In North America alone, agencies receive more than 40,000 complaints about black bear annually. Black bears are known as ‘food-driven’ animals, meaning most conflicts result from a bear’s drive to meet its nutritional needs. Not surprisingly, an overwhelming proportion of conflicts are related to their use of anthropogenic (human) food sources, such as garbage, bird food, and crops. Understanding what drives human-bear conflict is the first part …

Growth And Development, From: Forages: The Science Of Grassland Agriculture, Volume Ii, Robert B. Mitchell, Daren Redfearn, Kenneth J. Moore

Department of Agronomy and Horticulture: Faculty Publications

The growth and development of forage plants is an amazing process. In some annual grasses such as cereal rye, plants can go from the late vegetative stage to fully-flowered in less than two weeks. Conversely, some perennial grasses like indiangrass can go from the vegetative stage to the elongation stage, then enter a quiescent phase for several weeks until adequate moisture is available which then moves plants into the flowering stages to complete the seed production process. Understanding the developmental morphology of forage plants is important for making good management decisions. Many such decisions involve timing the initiation or termination …

Evaluation Of Level Of Milk Potential On Nutrient Balance In 2- And 4- Year- Old May- Calving Range Cows Grazing Sandhills Upland Range, J. Travis Mulliniks, Don C. Adams

Nebraska Beef Cattle Reports

A modeling study evaluated the effects of milk production level on nutrient balance in May- calving cows grazing Sandhills upland range during the breeding season. Forage quality of upland range peaks in June and steadily declines in July until November. With timing of forage quality decline and increasing nutrient demands due to lactation, cows were in a negative energy balance in late June and early July prior to deficiency of metabolizable protein. Supplementation to meet energy deficiencies in June and July and MP deficiencies in July with distiller grains that is high ruminally undegradable protein and high fiber energy may …

Nutrient Digestibility Of Condensed Algal Residue Solubles In Beef Cattle Fishing Diets, Mitchell M. Norman, Hannah C. Wilson, Andrea K. Watson, Galen E. Erickson, Jonathan W. Wilson

Nebraska Beef Cattle Reports

Condensed algal residue solubles (CARS) were evaluated in finishing cattle diets. Six treatments were evaluated (2 × 3 factorial arrangement), CARS inclusion in the diet at 0, 5, or 10% of diet dry matter with 0 or 20% wet distillers grains. Th e remainder of the diets consisted of 57.5– 87.5% dry rolled corn, 7.5% sorghum silage and 5% supplement. Increasing wet distillers grains in the diet had no effect on dry matter and organic matter intake but decreased dry matter and organic matter digestibility. Increasing CARS inclusion in the diet resulted in lower dry matter and organic matter intake …

A Justification For Continued Management Of Turfgrass During Economic Contraction, James T. Brosnan, Ambika Chandra, Roch E. Gaussoin, Alec Kowalewski, Bernd Leinauer, Frank S. Rossi, Douglas J. Soldat, John C. Stier, J. Bryan Unruh

Department of Agronomy and Horticulture: Faculty Publications

A novel coronavirus, termed COVID-19, spread worldwide and become a global pandemic in 2020. Forecasts show that COVID-19 will cause substantial economic contraction affecting almost every industry. Managed turfgrass, particularly in urban settings, has many positive societal and environmental benefits. In a contracted economy, will resources be available to manage turfgrass to achieve these benefits? In this paper, we outline the benefits of managed turfgrass on golf courses, playing fields, recreational parks, and urban landscapes to assist decision makers with resource allocation in the COVID-19 era.

Introducing An Optimization- And Explicit Runge-Kutta- Based Approach To Perform Dynamic Flux Balance Analysis, Wheaton L. Schroeder, Rajib Saha

Department of Chemical and Biomolecular Engineering: Faculty Publications

in this work we introduce the generalized optimization- and explicit Runge-Kutta-based Approach (oRKA) to perform dynamic flux Balance Analysis (dfBA), which is numerically more accurate and computationally tractable than existing approaches. oRKA is applied to a four-tissue (leaf, root, seed, and stem) model of Arabidopsis thaliana, p-ath773, uniquely capturing the core-metabolism of several stages of growth from seedling to senescence at hourly intervals. Model p-ath773 has been designed to show broad agreement with published plant-scale properties such as mass, maintenance, and senescence, yet leaving reaction-level behavior unconstrainted. Hence, it serves as a framework to study the reaction-level behavior necessary for …

R-Α-Lipoic Acid And 4-Phenylbutyric Acid Have Distinct Hypolipidemic Mechanisms In Hepatic Cells, Bo He, Régis Moreau

Department of Nutrition and Health Sciences: Faculty Publications

The constitutive activation of the mechanistic target of rapamycin complex 1 (mTORC1) leads to the overproduction of apoB-containing triacylglycerol-rich lipoproteins in HepG2 cells. R-α-lipoic acid (LA) and 4-phenylbutyric acid (PBA) have hypolipidemic function but their mechanisms of action are not well understood. Here, we reported that LA and PBA regulate hepatocellular lipid metabolism via distinct mechanisms. The use of SQ22536, an inhibitor of adenylyl cyclase, revealed cAMP’s involvement in the upregulation of CPT1A expression by LA but not by PBA. LA decreased the secretion of proprotein convertase subtilisin/kexin type 9 (PCSK9) in the culture media of hepatic cells and increased …

Why Does The Importance Of Education For Health Differ Across The United States?, Blakelee R. Kemp, Jennifer Karas Montez

Department of Sociology: Faculty Publications

The positive association between educational attainment and adult health (“the gradient”) is stronger in some areas of the United States than in others. Explanations for the geographic pattern have not been rigorously investigated. Grounded in a contextual and life-course perspective, the aim of this study is to assess childhood circumstances (e.g., childhood health, compulsory schooling laws) and adult circumstances (e.g., wealth, lifestyles, economic policies) as potential explanations. Using data on U.S.-born adults aged 50 to 59 years at baseline (n = 13,095) and followed for up to 16 years across the 1998 to 2014 waves of the Health and Retirement …

Principles, Applications, And Biosafety Of Plant Genome Editing Using Crispr-Cas9, Kaoutar El-Mounadi, María Luisa Morales-Floriano, Hernan Garcia-Ruiz

Department of Plant Pathology: Faculty Publications

The terms genome engineering, genome editing, and gene editing, refer to modifications (insertions, deletions, substitutions) in the genome of a living organism. The most widely used approach to genome editing nowadays is based on Clustered Regularly Interspaced Short Palindromic Repeats and associated protein 9 (CRISPR-Cas9). In prokaryotes, CRISPR-Cas9 is an adaptive immune system that naturally protects cells from DNA virus infections. CRISPR-Cas9 has been modified to create a versatile genome editing technology that has a wide diversity of applications in medicine, agriculture, and basic studies of gene functions. CRISPR-Cas9 has been used in a growing number of monocot and dicot …

The Role Of European Starlings (Sturnus Vulgaris) In The Dissemination Of Multidrug- Resistant Escherichia Coli Among Concentrated Animal Feeding Operations, Jeffrey C. Chandler, Jennifer E. Anders, Nicolas A. Blouin, James C. Carlson, Jeffrey T. Lejeune, Lawrence D. Goodridge, Baolin Wang, Leslie A. Day, Anna M. Mangan, Dustin A. Reid, Shannon M. Coleman, Matthew W. Hopken, Bledar Bisha

United States Department of Agriculture Wildlife Services: Staff Publications

Antimicrobial use in livestock production is a driver for the development and proliferation of antimicrobial resistance (AMR). Wildlife interactions with livestock, acquiring associated AMR bacteria and genes, and wildlife’s subsequent dispersal across the landscape are hypothesized to play an important role in the ecology of AMR. Here, we examined priority AMR phenotypes and genotypes of Escherichia coli isolated from the gastrointestinal tracts of european starlings (Sturnus vulgaris) found on concentrated animal feeding operations (CAFOs). European starlings may be present in high numbers on cAfos (>100,000 birds), interact with urban environments, and can migrate distances exceeding 1,500 km in North …

Genomic-Based Identification Of Environmental And Clinical Listeria Monocytogenes Strains Associated With An Abortion Outbreak In Beef Heifers, Katherine J. Whitman, James L. Bono, Michael L. Clawson, John D. Loy, Joseph M. Bosilevac, Terrance M. Arthur, Jeff D. Ondrak

School of Veterinary and Biomedical Sciences: Faculty Publications

Background: In a beef cattle facility an outbreak of abortions occurred over a 36-day period and included samples from two aborted (non-viable) fetuses and 21 post-abortion clinical cases. There are numerous etiologies, including clinical listeriosis. At the species level, Listeria monocytogenes is ubiquitous in cattle production environments, including soil, feed, and occasionally water sources, and is a common enteric resident of cattle and other mammals. There are four genetically distinct lineages of L. monocytogenes (I-IV), with most lineage III and IV isolates obtained from ruminants. Definitive diagnosis of L. monocytogenes as a causative agent in disease outbreaks relies upon case …

Colombian Retrospective Study Of The Association Between Breastfeeding Duration And Eating Behaviors, Elsa Lucia Escalante-Barrios, Sonia Suarez Enciso, Jesús Estrada, Marilyn Anturi Linero, Alejandra Hérdenez

Department of Educational Psychology: Faculty Publications

The current retrospective cross-sectional study included 175 Colombian caregivers of children ranging between 24 and 59 months old (M=47.08, SD=7.08) enrolled in childcare centers located in the Caribbean region. 58% of the children are male, and all of them belong to low-income families. Breastfeeding duration ranged between children’s 0 to 37 months old (M=10.84, SD=8.48); 64 of them had exclusive breastfeeding for during their first 6 months (i.e., no fed with bottle). Results showed that the variance of Food Responsiveness explained by the model was 2% (R2=.02, F(3,161)=1.081, p=.359). Breastfeeding duration did not significantly predict Food Responsiveness (β=-.004, p=.219), as …

Terpenoid-Induced Feeding Deterrence And Antennal Response Of Honey Bees, Nicholas R. Larson, Scott T. O'Neal, Ulrich R. Bernier, Jeffrey R. Bloomquist, Troy D. Anderson

Department of Entomology: Faculty Publications

Multiple interacting stressors negatively affect the survival and productivity of managed honey bee colonies. Pesticides remain a primary concern for beekeepers, as even sublethal exposures can reduce bee immunocompetence, impair navigation, and reduce social communication. Pollinator protection focuses on pesticide application guidelines; however, a more active protection strategy is needed. One possible approach is the use of feeding deterrents that can be delivered as an additive during pesticide application. The goal of this study was to validate a laboratory assay designed to rapidly screen compounds for behavioral changes related to feeding or feeding deterrence. The results of this investigation demonstrated …

Sublethal Endpoints In Non-Target Organism Testing For Insect-Active Ge Crops, Andrew Roberts, Chad J. Boeckman, Marina Mühl, Jörg Romeis, John L. Teem, Fernando H. Valicente, Judith K. Brown, Steven L. Levine, Richard L. Melnick, Thais B. Rodrigues, Ana M. Vélez, Xuguo Zhou, Richard L. Hellmich, Martin G. Edwards

Department of Entomology: Faculty Publications

Historically, genetically engineered (GE) plants that have incorporated genes conferring insect protection have primarily used Cry proteins derived from Bacillus thuringiensis (Bt) to achieve their insecticidal phenotype. As a result, regulators have developed a level of familiarity and confidence in reviewing plants incorporating these insecticidal proteins. However, new technologies have been developed that produce GE plants that incorporate pest protection by triggering an RNA interference (RNAi) response or proteins other than Bt Cry proteins. These technologies have new modes of action. Although the overall assessment paradigm for GE plants is robust, there are ongoing discussions about the appropriate tests and …

Proceedings Of The 2020 American Bee Research Conference, Bradley N. Metz, Judy Wu-Smart, Michael Simone-Finstrom

Department of Entomology: Faculty Publications

The 2020 American Bee Research Conference (ABRC) was held on 9–10 January 2020 in conjunction with the annual convention of the American Beekeeping Federation Conference and Trade Show in Schaumburg, IL. Over the two-day conference, a total of 65 oral and poster presentations were given, representing work done from over 30 different research groups from throughout the United States and Canada. These proceedings contain the submitted abstracts for presentations given at the 2020 American Bee Research Conference.

Defining Pollinator Health: A Holistic Approach Based On Ecological, Genetic, And Physiological Factors, Margarita M. López-Uribe, Vincent A. Ricigliano, Michael Simone-Finstrom

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Evidence for global bee population declines has catalyzed a rapidly evolving area of research that aims to identify the causal factors and to effectively assess the status of pollinator populations. The term pollinator health emerged through efforts to understand causes of bee decline and colony losses, but it lacks a formal definition. In this review, we propose a definition for pollinator health and synthesize the available literature on the application of standardized biomarkers to assess health at the individual, colony, and population levels. We focus on biomarkers in honey bees, a model species, but extrapolate the potential application of these …

Analysis Of Small Rna Populationsgenerated In Peanut Leaves After Exogenous Application Of Dsrna And Dsdna Targeting Aflatoxin Synthesis Genes, Imana L. Power, Paola C. Faustinelli, Valerie A. Orner, Victor S. Sobolev, Renee S. Arias

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Previously, we have shown that RNA interference (RNAi) can prevent aflatoxin accumulation in transformed peanuts. To explore aflatoxin control by exogenous delivery of double-strand RNA (dsRNA) it is necessary to understand the generation of small RNA (sRNA) populations. We sequenced 12 duplicate sRNA libraries of in-vitro-grown peanut plants, 24 and 48 h after exogenous application of five gene fragments (RNAi-5x) related to aflatoxin biosynthesis in Aspergillus flavus. RNAi-5x was applied either as double-stranded RNA (dsRNA) or RNAi plasmid DNA (dsDNA). Small interfering RNAs (siRNAs) derived from RNAi-5x were significantly more abundant at 48 h than at 24 h, and the …

Genetic Diversity Of Aflatoxin-Producing Aspergillus Flavus Isolated From Selected Groundnut Growing Agro-Ecological Zones Of Uganda, Amos Acur, Renee Arias, Steven Odongo, Samuel Tuhaise, National Agricultural Research Laboratories, Kampala, Uganda, John Adriko, Dennis Muhanguzi, Stephen Buah, Andrew Kiggundu

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Background: Groundnut pre- and post-harvest contamination is commonly caused by fungi from the Genus Aspergillus. Aspergillus flavus is the most important of these fungi. It belongs to section Flavi; a group consisting of aflatoxigenic (A. flavus, A. parasiticus and A. nomius) and non-aflatoxigenic (A. oryzae, A. sojae and A. tamarii) fungi. Aflatoxins are food-borne toxic secondary metabolites of Aspergillus species associated with severe hepatic carcinoma and children stuntedness. Despite the well-known public health significance of aflatoxicosis, there is a paucity of information about the prevalence, genetic diversity and population structure of A. flavus in different …

Contributions In Puerto Rico To Bean, Phaseolus Spp., Research, James S. Beaver, Consuelo Estévez De Jensen, Phillip N. Miklas, Timothy G. Porch

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Most literature reviews focus on a specific topic. The purpose of this paper, however, is to review the contributions made by a multidisciplinary team of researchers at a specific location (Puerto Rico) over a period of several decades. This paper documents bean research of the University of Puerto Rico and the USDA-ARS Tropical Agriculture Research Station during the past century. The following illustrates the merits of continuity of effort in research and shows that research often follows a logical sequence of actions to solve problems related to genetic improvement as well as to study biotic and abiotic factors that affect …

Estimation Of Maize Yield And Effects Of Variable-Rate Nitrogen Application Using Uav-Based Rgb Imagery, Meina Zhang, Jianfeng Zhou, Kenneth A. Sudduth, Newell R. Kitchen

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Accurate crop yield estimation is important for agronomic and economic decision-making. This study evaluated the performance of imagery data acquired using a unmanned aerial vehicle (UAV)-based imaging system for estimating yield of maize (Zea mays L.) and the effects of variable-rate nitrogen (N) application on crops. Images of a 27-ha maize field were captured using a UAV with a consumer-grade RGB camera flying at ~100 m above ground level at three maize growth stages. The collected sequential images were stitched and the Excess Green (ExG) colour feature was extracted to develop prediction models for maize yield and to examine the …

Timing And Extent Of Crop Damage By Wild Pigs (Sus Scrofa Linnaeus) To Corn And Peanut Fields, C. M. Boyce, Kurt C. Vercauteren, James C. Beasley

United States Department of Agriculture Wildlife Services: Staff Publications

The global expansion of wild pigs over the last few decades has resulted in an increase in extent and distribution of damages to crops, placing a growing strain on agricultural producers and land managers. Despite the extent of wild pig damage to agriculture, there is little data regarding timing and spatial variability of damage to corn (Zea mays Linnaeus) and we found no data regarding the effect of these factors on peanuts (Arachis hypogaea Linnaeus). Our objective was to determine the timing and extent of wild pig damage to corn and peanut fields, as well as the extent …

Competing Reproductive And Physiological Investments In An All‑Female Lizard, The Colorado Checkered Whiptail, Lise M. Aubry, Spencer B. Hudson, Bryan M. Kluever, Alison C. Webb, Susannah S. French

United States Department of Agriculture Wildlife Services: Staff Publications

Organisms in the wild have to allocate limited resources towards competing functions such as reproduction, growth, and self-maintenance. These competing investments create significant changes in physiological activity, and we still know little about the relationship between physiological activity and reproductive investment in natura. We investigated trade-offs between physiological activity and reproductive investment in the parthenogenetic Colorado checkered whiptail, Aspidoscelis neotesselata, across three different sites at the US Army Fort Carson Military Installation near Colorado Springs, CO, through-out the reproductive season in 2018 and 2019. We measured clutch size and reproductive activity and quantified plasma corticosterone (CORT), reactive oxygen metabolites (ROMs), …

Movement Behavior Of Radio-Tagged European Starlings In Urban, Rural, And Exurban Landscapes, Page E. Klug, H. Jeffrey Homan

United States Department of Agriculture Wildlife Services: Staff Publications

Since their intentional introduction into the United States in the 1800s, European starlings (Sturnus vulgaris) have become the fourth most common bird species and a nuisance bird pest in both urban and rural areas. Managers require better information about starling movement and habit-use patterns to effectively manage starling populations and the damage they cause. Thus, we revisited 6 radio-telemetry studies conducted during fall or winter between 2005 and 2010 to compare starling movements (n = 63 birds) and habitat use in 3 landscapes. Switching of roosting and foraging sites in habitat-sparse rural landscapes caused daytime (0900–1500 hours) …

Serum Chemistry Values In Wild Black Vultures In Mississippi, Usa, Fred L. Cunningham, Sherman W. Jack, Amanda R. Deese, Eric R. Wengert, Kyle Van Why, Carla L. Huston, Scott Lemmons, Richard B. Minnis

United States Department of Agriculture Wildlife Services: Staff Publications

Vultures (Cathartidae and Accipitridae) play an important role in ecosystem balance by rapidly disposing animal carcasses and thus preventing the potential spread of pathogens. Blood chemistry values provide a means of assessing the health of wildlife and wild animal populations; however, there are significant differences in chemistries among species and when comparing captive and free-living New and Old World vultures. In 2007, we collected blood serum from 30 female and 14 male wild, healthy black vultures (Coragyps atratus) live-trapped by the U.S. Department of Agriculture, Animal and Plant Health Inspection Service, Wildlife Services from a power substation in …

Provider Reported Implementation Of Nutrition-Related Practices In Childcare Centers And Family Childcare Homes In Rural And Urban Nebraska, Dipti Dev, Aileen Garcia, David A. Dzewaltowski, Susan B. Sisson, Lisa Franzen-Castle, Zainab Rida, Natalie A. Williams, Carly Hillburn, Danae Dinkel, Deepa Srivastava, Christina Burger, Emily Hulse, Donnia Behrends, Natasha Frost

Department of Child, Youth, and Family Studies: Faculty Publications

Approximately 15 million children under age 6 are in childcare settings, offering childcare providers an opportunity to influence children’s dietary intake. Childcare settings vary in organizational structure – childcare centers (CCCs) vs. family childcare homes (FCCHs) – and in geographical location – urban vs. rural. Research on the nutrition-related best practices across these childcare settings is scarce. The objective of this study is to compare nutrition-related best practices of CCCs and FCCHs that participate in the Child and Adult Care Food Program (CACFP) in rural and urban Nebraska. Nebraska providers (urban n = 591; rural n = 579) reported implementation …

The Impact Of Responsive Feeding Practice Training On Teacher Feeding Behaviors In Tribal Early Care And Education: The Food Resource Equity And Sustainability For Health (Fresh) Study, Kaysha Sleet, Susan B. Sisson, Dipti A. Dev, Charlotte Love, Mary B. Williams, Leah A. Hoffman, Valarie Blue Bird Jernigan

Department of Child, Youth, and Family Studies: Faculty Publications

Background: Establishing healthy eating habits early affects lifelong dietary intake, which has implications for many health outcomes. With children spending time in early care and education (ECE) programs, teachers establish the daytime meal environment through their feeding practices.

Objective: We aimed to determine the effect of a teacher-focused intervention to increase responsive feeding practices in 2 interventions, 1 focused exclusively on the teacher’s feeding practices and the other focused on both the teacher’s feeding practices and a nutrition classroom curriculum, in ECE teachers in a Native American (NA) community in Oklahoma.

Methods: Nine tribally affiliated ECE programs were …

Emotional Support And Mental Health Among Somali Men In A Rural Midwestern Town, Julie A. Tippens, Gilbert R. Parra, Patrick Habecker, Kimberly Gocchi Carrasco, Arthur R. Andrews Iii, Angela L. Palmer-Wackerly, Virginia Chaidez, Jordan Soliz, Lisa M. Pytlikzillig, Kirk Dombrowski

Department of Child, Youth, and Family Studies: Faculty Publications

Perceived social support has been correlated with refugees’ positive mental health outcomes; yet, little is known about the perceived sources of support after secondary migration to new-destination rural towns. Somali refugee men (n _ 49) residing in a rural Midwest United States community were recruited using respondent-driven sampling to complete a self-administered structured survey in English or Somali using audio computer-assisted self-interview software. Questions assessed perceived sources of support, psychological distress, and happiness. Somali participants reported low utilization of both informal (30.4%) and formal (24.4%) supports when sad, stressed, or worried. Two thirds of participants reported low levels of …

Comparison Of Urban And Rural Physical Activity And Outdoor Play Environments Of Childcare Centers And Family Childcare Homes, Danae Dinkel, Dipti Dev, Yage Guo, Ami Sedani, Emily Hulse, Zainab Rida, Kayla Abel

Department of Child, Youth, and Family Studies: Faculty Publications

The purpose of this study was to examine the physical activity environment in childcare programs across type (childcare centers [CCCs] and family childcare homes [FCCHs]) and geographic location (urban and rural) as assessed by physical activity best practices according to the Go Nutrition and Physical Activity Self-assessment in Child Care. Results showed CCCs compared with FCCHs reported higher achievement of best practices. Further, urban childcare programs (CCCs and FCCHs) reported higher achievement of best practices in comparison to rural childcare programs. There is a need to deliver targeted interventions that promote children’s physical activity in FCCHs and CCCs in rural …

Eastern North Carolina Head Start Teachers’ Personal And Professional Experiences With Healthy Eating And Physical Activity: A Qualitative Exploration, Virginia C. Stage, Lorelei Jones, Jocelyn Bayles, Archana V. Hegde, Dipti Dev, L. Suzanne Goodell

Department of Child, Youth, and Family Studies: Faculty Publications

Objective: Explore the interrelationship between teachers’ personal and professional socio-ecological structures while examining Head Start (HS) teachers’ experiences with (1) trying to eat healthy and engage in physical activity (PA) and (2) promote healthy eating and PA in their classrooms.

Design: In-depth semi-structured interviews were collected from March through June 2017. Researchers designed the data collection and analysis methods using a phenomenological approach. All interviews were recorded using digital audio and transcribed verbatim.

Setting: Seven HS centers in two rural eastern North Carolina counties.

Participants: Teachers (n 15) who had recently participated in a healthy eating and physical activity …

Efficient Coi Barcoding Using High Throughput Single-End 400 Bp Sequencing, Chentao Yang, Yuxuan Zheng, Shangjin Tan, Guanliang Meng, Wei Rao, Caiqing Yang, David G. Bourne, Paul A. O'Brien, Junqiang Xu, Sha Liao, Ao Chen, Xiaowei Chen, Xinrui Jia, Ai-Bing Zhang, Shanlin Liu

Harold W. Manter Laboratory of Parasitology: Library Materials

Background

Over the last decade, the rapid development of high-throughput sequencing platforms has accelerated species description and assisted morphological classification through DNA barcoding. However, the current highthroughput DNA barcoding methods cannot obtain full-length barcode sequences due to read length limitations (for example, a maximum read length of 300 bp for the Illumina’s MiSeq system), or are hindered by a relatively high cost or low sequencing output (e.g. a maximum number of eight million reads per cell for the PacBio’s SEQUEL II system).

Results

Pooled cytochrome c oxidase subunit I (COI) barcodes from individual specimens were sequenced on the …