Digital Commons Network^™

Does Integrating Crops With Livestock Production Impact Soil Properties And Crop Production?, Lindsey Anderson

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Re-integrating crop and livestock production through cover crop (CC) and corn residue grazing could efficiently utilize resources and ensure profitability while improving environmental quality, but how this integration affects soils and crops is not well understood. We conducted two studies to address this. In the first study, we evaluated the impact of cattle (1.3-3.7 head ha^-1) grazing an oat (Avena sativa L.) CC on soil and crop yields in two adjacent irrigated no-till corn (Zea mays L.)-soybean (Glycine max L.) fields on silt loam soils in eastern Nebraska. Field I was grazed twice, while Field …

Gut Community Response To Wheat Bran And Pinto Bean, Shuen Leow

Department of Food Science and Technology: Dissertations, Theses, and Student Research

There is general consensus among the scientific community that dietary fibers reduce the risk of Western diseases through their fermentation by beneficial microbial communities in the human gut. However, dietary fibers in wheat bran (WB) and pinto bean (PB) are incompletely fermented by the gut microbiota. Therefore, there is a critical need to identify gut microbial communities that can increase fermentation of dietary fibers from these foods to maximize their disease-preventing properties. The goal of this study was to identify such communities with increased capacity to ferment the dietary fibers in WB and PB. To accomplish these goals, a stepwise …

Food Sensitivity In Individuals With Altered And Unaltered Digestive Tracts, Walker Carson

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Immunoglobulin G (IgG) against food proteins has become the subject of much discussion with regards to its role in adverse food reactions. An estimated 20% of the population suffers from some type of food intolerance. Food sensitivity can present with a vast range of symptoms and severities. Diet can have a substantial impact on the wellbeing of individuals with diseases of the gastrointestinal tract, such as Crohn’s disease or ulcerative colitis. Incidentally, these diseases have been associated with elevated levels of food-specific IgG as well an increased likelihood of food sensitivity. The presence of food-specific IgG and food sensitivity in …

Investigating The Role Of Spiders In Integrated Pest Management For Biological Control Of Nebraska Crop Pests, Samantha Daniel

Department of Entomology: Dissertations, Theses, and Student Research

As generalist predators, spiders are capable of fulfilling a wide variety of ecological niches allowing them to intercept and prey upon an array of insect species. This characteristic could be particularly advantageous within agricultural ecosystems. This project sought to reveal the composition and abundance of spider communities within cornfields in western Nebraska and the impact of agronomic practices on those communities as well as determine the potential for spider predation upon two key pests of corn. Spiders were collected from eight corn fields from May to August 2017 and four corn fields from May to August 2018. Additionally, the populations …

Characterizing The Susceptibility And Biological Fitness Of Nebraska Western Corn Rootworm Populations To Pyramided Plant-Incorporated Protectants, Jordan D. Reinders

Department of Entomology: Dissertations, Theses, and Student Research

The western corn rootworm (WCR), Diabrotica virgifera virgifera LeConte, is a pest of field corn, Zea mays L., across the United States (U.S.) Corn Belt. Transgenic corn expressing two or more insecticidal proteins (‘pyramid’) derived from Bacillus thuringiensis Berliner (Bt) is a common management strategy employed in areas of continuous corn production. The newest rootworm-Bt pyramid registered in the U.S. is SmartStax^® PRO, which contains two rootworm-Bt proteins (Cry3Bb1, Cry34/35Ab1) and DvSnf7 dsRNA. With the pending commercialization of SmartStax^® PRO, understanding the current susceptibility of Nebraska WCR populations to the Cry3Bb1 + Cry34/35Ab1 pyramid (SmartStax^®) and …

Risk-Based Evaluation Of Treatments For Water Used At A Pre-Harvest Stage To Mitigate Microbial Contamination Of Fresh Raspberry In Chile, Constanza Avello Lefno

Department of Food Science and Technology: Dissertations, Theses, and Student Research

The global agricultural sectors are facing challenges of providing food for a rapidly growing population while still meeting appropriate food quality and safety standards. Chile, a South American country with great climatic and soil diversity, is positioned among the top ten agricultural exporters in the world.

Berries are considered highly prioritized produce in terms of microbiological hazards. The work presented in this thesis primarily focuses on the control of microbial contamination in water used at a pre-harvest stage, for enhanced quality and safety of raspberry products in Chile destined for export.

Two studies were conducted to achieve the goals. In …

Production, Evaluation, And Selection Of Elite Quality Protein Popcorn (Qpp) Hybrids, Leandra Marshall Parsons

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

In 2017, twelve Quality Protein Popcorn (QPP) inbred lines were developed and selected as premier dent by popcorn crosses fit for hybridization and testing. These QPP inbred lines were derived from specific Quality Protein dent Maize (QPM) by ConAgra Brands® popcorn line crosses to produce high lysine, vitreous popcorn lines capable of near-equal popping characteristics compared to the original popcorn parents. The QPP hybridization project commenced in the summer of 2018 utilizing these 12 inbred QPP lines and crossing them in a full diallel. Since then, the production of QPP hybrids has employed a diverse set of selection factors evaluating …

Evaluation Of Grain Type And Processing Method On Steer Performance, Carcass Characteristics, And Nutrient Digestion, Caitlin A. Coulson

Department of Animal Science: Dissertations, Theses, and Student Research

A feedlot finishing study evaluated the effect of replacing corn with dry-rolled wheat in diets containing wet distillers grains plus solubles (WDGS; Exp 1). Two studies were conducted to evaluate the effect of corn type [dry corn (DC), high-moisture corn (HMC), or a blend of dry and high-moisture corn (BLEND)] processed with either AutomaticRoller Mill (ROLL) or hammer mill (HAMMER) on steer performance, carcass traits, and nutrient digestibility (Exp. 2 and 3). In Exp. 1, steers were fed diets containing 100% dry-rolled corn (DRC) or a 50:50 blend of dry-rolled corn and wheat (WHEAT) in diets containing 12 …

Understanding Rumen Microbial Community Structure And Function Towards Decreasing Methane Emissions, Allison L. Knoell

Department of Animal Science: Dissertations, Theses, and Student Research

Resource use is continually being limited due to this growth, therefore, production of high-quality animal protein sources, such as meat and milk, are challenged. The rumen microbiome is extensive and serves to provide several metabolic requirements for the animal for growth. Recently, a significant amount of research is being driven towards understanding the rumen microbiome due to its large effect on metabolic requirements.

A study was conducted to replace alfalfa with nonforage fiber sources in dairy cows. It was determined milk yield and intake are maintained when nonforage fibers replace forage sources, while decreasing methane levels. Water consumption decreased when …

Categorization Of Orthologous Gene Clusters In 92 Ascomycota Genomes Reveals Functions Important For Phytopathogenicity, Daniel Peterson, Tang Li, Ana M. Calvo, Yanbin Yin

Food for Health: Publications

Phytopathogenic Ascomycota are responsible for substantial economic losses each year, destroying valuable crops. The present study aims to provide new insights into phytopathogenicity in Ascomycota from a comparative genomic perspective. This has been achieved by categorizing orthologous gene groups (orthogroups) from 68 phytopathogenic and 24 non-phytopathogenic Ascomycota genomes into three classes: Core, (pathogen or non-pathogen) group-specific, and genome-specific accessory orthogroups. We found that (i) ~20% orthogroups are group-specific and accessory in the 92 Ascomycota genomes, (ii) phytopathogenicity is not phylogenetically determined, (iii) group-specific orthogroups have more enriched functional terms than accessory orthogroups and this trend is particularly evident in phytopathogenic …

Origin Of Agricultural Plant Pathogens: Diversity And Pathogenicity Of Rhizoctonia Fungi Associated With Native Prairie Grasses In The Sandhills Of Nebraska, Srikanth Kodati, Anthony O. Adesemoye, Gary Y. Yuen, Jerry Volesky, Sydney E. Everhart

Department of Plant Pathology: Faculty Publications

The Sandhills of Nebraska is a complex ecosystem, covering 50,000 km² in central and western Nebraska and predominantly of virgin grassland. Grasslands are the most widespread vegetation in the U.S. and once dominated regions are currently cultivated croplands, so it stands to reason that some of the current plant pathogens of cultivated crops originated from grasslands, particularly soilborne plant pathogens. The anamorphic genus Rhizoctonia includes genetically diverse organisms that are known to be necrotrophic fungal pathogens, saprophytes, mycorrhiza of orchids, and biocontrol agents. This study aimed to evaluate the diversity of Rhizoctonia spp. on four native grasses in the …

Early Satellite Cell Communication Creates A Permissive Environment For Long-Term Muscle Growth, Kevin A. Murach, Bailey D. Peck, Robert A. Policastro, Ivan J. Vechetti, Douglas W. Van Pelt, Cory M. Dungan, Lance T. Denes, Xu Fu, Camille R. Brightwell, Gabriel E. Zentner, Esther E. Dupont-Versteegden, Christopher I. Richards, Jeramiah J. Smith, Christopher S. Fry, John J. Mccarthy, Charlotte A. Peterson

Department of Nutrition and Health Sciences: Faculty Publications

Using in vivo muscle stem cell (satellite cell)-specific extracellular vesicle (EV) tracking, satellite cell depletion, in vitro cell culture, and single-cell RNA sequencing, we show satellite cells communicate with other cells in skeletal muscle during mechanical overload. Early satellite cell EV communication primes the muscle milieu for proper long-term extracellular matrix (ECM) deposition and is sufficient to support sustained hypertrophy in adult mice, even in the absence of fusion to muscle fibers. Satellite cells modulate chemokine gene expression across cell types within the first few days of loading, and EV delivery of miR 206 to fibrogenic cells represses Wisp1 expression …

Phenotypic Plasticity Of Diverse Sorghum Varieties In Response To Nitrogen Deficit Stress, Mackenzie Zwiener

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

The movement of nutrients from old vegetative tissue to young leaves and reproductive organs is known as senescence. Senescence can be influenced by the environment of a plant, such as, drought, heat, and nutrient stress. These environmental stressors can also influence canopy architecture. Crop canopy consists of several traits including: leaf number, angle, length and width. Past research in crops like maize and rice have shown significant influences of more erect leaves, including, the ability for increased planting density, which optimizes light interception and increases yield. In a field trial of a sorghum association panel including 345 different sorghum varieties …

Saturated Free Fatty Acids Induce Placental Trophoblast Lipoapoptosis, Sathish Kumar Natarajan, Taylor Bruett, Philma Glora Muthuraj, Prakash K. Sahoo, Jillian Power, Justin L. Mott, Corrine Hanson, Ann Anderson-Berry

Department of Nutrition and Health Sciences: Faculty Publications

Obesity during pregnancy increases the risk for maternal complications like gestational diabetes, preeclampsia, and maternal inflammation. Maternal obesity also increases the risk of childhood obesity, intrauterine growth restriction (IUGR) and diabetes to the offspring. Increased circulating free fatty acids (FFAs) in obesity due to adipose tissue lipolysis induces lipoapoptosis to hepatocytes, cholangiocytes, and pancreatic-β-cells. During the third trimester of human pregnancy, there is an increase in maternal lipolysis and release of FFAs into the circulation. It is currently unknown if increased FFAs during gestation as a result of maternal obesity cause placental cell lipoapoptosis. Increased exposure of FFAs during maternal …

Crispr/Cas9-Induced Fad2 And Rod1 Mutations Stacked With Fae1 Confer High Oleic Acid Seed Oil In Pennycress (Thlaspi Arvense L.), Brice A. Jarvis, Trevor B. Romsdahl, Michaela G. Mcginn, Tara J. Nazarenus, Edgar B. Cahoon, Kent D. Chapman, John C. Sedbrook

Department of Biochemistry: Faculty Publications

Pennycress (Thlaspi arvense L.) is being domesticated as an oilseed cash cover crop to be grown in the off-season throughout temperate regions of the world. With its diploid genome and ease of directed mutagenesis using molecular approaches, pennycress seed oil composition can be rapidly tailored for a plethora of food, feed, oleochemical and fuel uses. Here, we utilized Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/Cas9 technology to produce knockout mutations in the FATTY ACID DESATURASE2 (FAD2) and REDUCED OLEATE DESATURATION1 (ROD1) genes to increase oleic acid content. High oleic acid (18:1) oil is valued for its oxidative stability that is …

Process Interventions For Improving The Microbiological Safety Of Low Moisture Food Ingredients, Tushar Verma

Department of Food Science and Technology: Dissertations, Theses, and Student Research

The recurrence of Salmonella in low moisture foods and the implementation of the FSMA rule requires a need to validate legacy and novel processing technologies. In this dissertation, a legacy thermal (extrusion), a novel thermal (radiofrequency (RF) heating), and a non-thermal (chlorine dioxide) technology, were evaluated as intervention technologies for Salmonella in low moisture foods. The twin-screw extruder was performed at different levels of screw speeds, temperatures, moisture contents, and fat contents to understand the impact of processing conditions on Salmonella inactivation in oat flour. At temperature >65°C, the Salmonella population was below the detection limit. At 55°C, Salmonella reduction …

Microbial Challenge Studies Of Radio Frequency Heating For Dairy Powders And Gaseous Technologies For Spices, Xinyao Wei

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Persistence, thermal resistance, and survival of Salmonella in low moisture foods (LMF) have resulted in several foodborne illness outbreaks. Both existing and novel pasteurization technologies need to be validated for microbial safety of LMF. In this dissertation, a framework for using radio frequency (RF) heating to enhance microbial safety of milk powders and egg white powder was established. Thermal inactivation kinetics of Salmonella in milk powders were determined to guide the dairy industry for identifying thermal processing conditions for pasteurization. Storage time showed no effect on the thermal resistance of Salmonella, which can simplify the process validation study in …

Non-Nutritive Suck Burst Pattern Stability In Extremely Premature Infants, Alejandra Marquez

College of Education and Human Sciences: Dissertations, Theses, and Student Research

The development of non-nutritive suck (NNS) burst dynamics in preterm infants reflects the integrity of the brain and is used clinically to assess feeding readiness and orofacial motor development (Mizuno and Ueda, 2005). The application of NNS analytics in the present report represents one outcome measurement set that is part of an ongoing clinical trial involving extremely preterm infants (EPI’s,[GA]) randomized to receive either pulsed orocutaneous stimulation therapeutics or a sham (blind pacifier), in conjunction with salivary sampling twice weekly to map gene expression of key proteins involved in neural development and molecular sensing of feeding related pathways in the …

Out Of This World Club!, Alec Miller, Katherine Osmundson

Honors Program: Expanded Learning Clubs

The purpose of Out of this World Club! was to make STEM and space less scary and intimidating, and display that anyone, even elementary students, can have fun learning about space. Each week consisted of learning about different planets in our solar system, their characteristics, and how they are similar or different from one another. The activities centered around creating something tangible that is representative of space. For example, the students designed asteroids with a rock and paint, created constellations out of toothpicks and mini marshmallows, and designed small rockets powered by blowing through a straw. A principal goal of …

Understanding Perceptions Of Quality Among Early Childhood Education Stakeholders In Tanzania And Lesotho: A Multiple Qualitative Case Study, Dawn Davis, Debra Miller, Dorothy Mrema, Moikabi Matsoai, Ntsoaki Mapetla, Abbie Raikes, Anna Burton

Department of Child, Youth, and Family Studies: Faculty Publications

Recent global efforts around early childhood education (ECE) have led to increased investments and access, especially in low- and middle-income countries (UNESCO, 2019). As access grows, focus has shifted from enrollment to quality (Gove, 2017). This paper explores how ECE stakeholders in Tanzania and Lesotho define ECE quality. Findings show that stakeholders define quality in similar ways, highlighting the importance of trained teachers who implement specific teaching practices, strong partnerships with families and the community, critical infrastructure, and government support. However, review of the country contexts found that current conditions and support for these quality indicators were lacking.

Do Long-Term Conservation Pasture Management Practices Influence Microbial Diversity And Antimicrobial Resistant Genes In Runoff?, Yichao Yang, Amanda J. Ashworth, Lisa M. Durso, Mary Savin, Jennifer M. Debruyn, Kimberly Cook, Philip A. Moore Jr, Philip R. Owens

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Runoff from land-applied manure and poultry litter is one mechanism by which manure-borne bacteria are transported over large distances in the environment. There is a global concern that antimicrobial resistant (AMR) genes may be transmitted through the food chain from animal manures to soil to surface water. However, details are lacking on the ecology of AMR genes in water runoff as well as how conservation management practices may affect the runoff microbiome or minimize the movement of AMR genes. The aim of this study was to identify microbial community structure and diversity in water runoff following 14-years of poultry litter …

Relationships Among Intramammary Health, Udder And Teat Characteristics, And Productivity Of Extensively Managed Ewes, Ryan M. Knuth, Whitney C. Stewart, Joshua B. Taylor, Bledar Bisha, Carl J. Yeoman, Megan L. Van Emon, Thomas W. Murphy

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Mastitis is an economically important disease and its subclinical state is difficult to diagnose, which makes mitigation more challenging. The objectives of this study were to screen clinically healthy ewes in order to 1) identify cultivable microbial species in milk, 2) evaluate somatic cell count (SCC) thresholds associated with intramammary infection, and 3) estimate relationships between udder and teat morphometric traits, SCC, and ewe productivity. Milk was collected from two flocks in early (<5 >d) and peak (30 to 45 d) lactation to quantify SCC (n = 530) and numerate cultivable microbial species by culture-based isolation followed by matrix-assisted laser …

Characterization Of The Domestic Goat Γδ T Cell Receptor Gene Loci And Gene Usage, Alexandria Gillespie, Al Yirsaw, Karthick P. Gunasekaran, Timothy P. L. Smith, Derek M. Bickhart, Michael Turley, Timothy Connelley, Janice C. Telfer, Cynthia L. Baldwin

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Goats and cattle diverged 30 million years ago but retain similarities in immune system genes. Here, the caprine T cell receptor (TCR) gene loci and transcription of its genes were examined and compared to cattle. We annotated the TCR loci using an improved genome assembly (ARS1) of a highly homozygous San Clemente goat. This assembly has already proven useful for describing other immune system genes including antibody and leucocyte receptors. Both the TCRγ (TRG) and TCRδ (TRD) loci were similarly organized in goats as in cattle and the gene sequences were highly conserved. However, the number of genes varied slightly …

Music Makers, Michaela Diehm

Honors Program: Expanded Learning Clubs

After school kids club that learns about music notes and incorporates games and dances to help students learn more about music, how to create their own music, and its importance to everyday life.

World Tour Diversity Club, Katie Hawk, Lauren Hartman

Honors Program: Expanded Learning Clubs

In this club, students will travel to a different country with each lesson. They will learn about the different cultures around the world and see how our differences bring us together.

Stemendously Fun Time Stem Club, Sarah Altman, Rhiannon Carlile

Honors Program: Expanded Learning Clubs

After school club for middle school students which focuses on bolstering scientific knowledge though experimentation and exploration of the scientific method.

Adventure Book Club - The Lion, The Witch And The Wardrobe, Courtney Helseth, Jillian Jacoba

Honors Program: Expanded Learning Clubs

This after school club serves to improve reading comprehension, teach ideas such as storyline and character development, and to add creativity to reading to encourage love of reading. The club utilizes the text, The Lion, the Witch and the Wardrobe by C.S. Lewis and includes various crafts, worksheets, and games to improve comprehension and make reading fun.

Ecosystems And Nature Club, Megan Ott, Joycin Stonacek

Honors Program: Expanded Learning Clubs

For students to appreciate the diversity and complexity of the environment around them, foster stewardship, and facilitate interactions with ecosystems

Ck Dance Club, Alyssa Johnson

Honors Program: Expanded Learning Clubs

No abstract provided.

Healthy Living Club, Odessa Ohrt, Elisha Reiners

Honors Program: Expanded Learning Clubs

Throughout the semester we explored various aspects of living a healthy lifestyle, we started in the topic of MyPlate and introduced the five food groups, touched on other elements of a healthy life (such as exercise, sleep, and the nine dimensions of wellness). Towards the end of the semester, we incorporated cooking lessons that taught the students safe kitchen habits and where their food comes from. We tried to incorporate physical activity, visual, audio, and hands-on elements into each club meeting.