Digital Commons Network^™

Tetracycline And Sulfonamide Antibiotic Resistance Genes In Soils From Nebraska Organic Farming Operations, Marylynn Cadena, Lisa M. Durso, Daniel N. Miller, Heidi M. Waldrip, B. L. Castleberry, Rhae A. Drijber, Charles S. Wortmann

Department of Agronomy and Horticulture: Faculty Publications

There is widespread agreement that agricultural antibiotic resistance should be reduced, however, it is unclear from the available literature what an appropriate target for reduction would be. Organic farms provide a unique opportunity to disentangle questions of agricultural antibiotic drug use from questions of antibiotic resistance in the soil. In this study, soil was collected from 12 certified organic farms in Nebraska, evaluated for the presence of tetracycline and sulfonamide resistance genes (n = 15 targets), and correlated to soil physical, chemical, and biological parameters. Tetracycline and sulfonamide antibiotic resistance genes (ARGs) were found in soils from all 12 …

Sivcpz Closely Related To The Ancestral Hiv-1 Is Less Or Non-Pathogenic To Humans In A Hu-Blt Mouse Model, Zhe Yuan, Guobin Kang, Lance Daharsh, Wenjin Fan, Qingsheng Li

Nebraska Center for Virology: Faculty Publications

The HIV-1 pandemic is a consequence of the cross-species transmission of simian immunodeficiency virus in wild chimpanzees (SIVcpz) to humans. Our previous study demonstrated SIVcpz strains that are closely related to the ancestral viruses of HIV-1 groups M (SIVcpzMB897) and N (SIVcpzEK505) and two SIVcpz lineages that are not associated with any known HIV-1 infections in humans (SIVcpzMT145 and SIVcpzBF1167), all can readily infect and robustly replicate in the humanized-BLT mouse model of humans. However, the comparative pathogenicity of different SIVcpz strains remains unknown. Herein, we compared the pathogenicity of the above four SIVcpz strains with HIV-1 using humanized-BLT mice. …

Identification Of Unequally Represented Founder Viruses Among Tissues In Very Early Siv Rectal Transmission, Jian Chen, Yanqin Ren, Lance Daharsh, Lu Liu, Guobin Kang, Qingsheng Li, Qiang Wei, Yanmin Wu, Jianqing Xu

Nebraska Center for Virology: Faculty Publications

Characterizing the transmitted/founder (T/F) viruses of multi-variant SIV infection may shed new light on the understanding of mucosal transmission.We intrarectally inoculated six Chinese rhesus macaques with a single high dose of SIVmac251 (3.1 × 10⁴ TCID₅₀) and obtained 985 full-length env sequences from multiple tissues at 6 and 10 days post-infection by single genome amplification (SGA). All 6 monkeys were infected with a range of 2 to 8 T/F viruses and the dominant variants from the inoculum were still dominant in different tissues from each monkey. Interestingly, our data showed that a cluster of rare T/F viruses …

Analytical Performance Of A Low‐Cost Multiplex Polymerase Chain Reaction Human Papillomavirus Genotyping Assay For Use In Sub‐Saharan Africa, Kandali Samwel, Crispin Kahesa, Julius Mwaiselage, Daniela Gonzalez, John T. West, Charles Wood, Joel Palefsky, Peter C. Angeletti

Nebraska Center for Virology: Faculty Publications

We have tested a multiplex polymerase chain reaction (PCR) human papillomavirus (HPV) genotyping assay to fill the need for rapid and low‐cost HPV detection in Sub‐ Saharan Africa. This method allows high throughput genotyping and simultaneous detection of 14 high‐risk and two low‐risk HPV types, by PCR amplification of HPV DNAs in a single reaction tube. In this study, we describe stepwise experiments to validate the multiplex HPV PCR assay for determination of HPV genotypes from 104 cervical brush samples from Tanzanian women. Assay performance was evaluated by determination of intra‐laboratory reproducibility, sensitivity, and specificity. Further performance was assessed by …

Discovery Of A Non-Nucleoside Rna Polymerase Inhibitor For Blocking Zika Virus Replication Through In Silico Screening, Aryamav Pattnaik, Nicholas Palermo, Bikash R. Sahoo, Zhe Yuan, Duoyi Hu, Arun S. Annamalai, Hiep L. X. Vu, Ignacio Correas, Pavan Kumar Prathipati, Christopher J. Destache, Qingsheng Li, Fernando A. Osorio, Asit K. Pattnaik, Shi-Hua Xiang

Nebraska Center for Virology: Faculty Publications

Zika virus (ZIKV), an emerging arbovirus, has become a major human health concern globally due to its association with congenital abnormalities and neurological diseases. Licensed vaccines or antivirals against ZIKV are currently unavailable. Here, by employing a structure-based approach targeting the ZIKV RNA-dependent RNA polymerase (RdRp), we conducted in silico screening of a library of 100,000 small molecules and tested the top ten lead compounds for their ability to inhibit the virus replication in cell-based in vitro assays. One compound, 3-chloro-N-[({4-[4-(2-thienylcarbonyl)-1-piperazinyl]phenyl}amino)carbonothioyl]-1-benzothiophene-2-carboxamide (TPB), potently inhibited ZIKV replication at submicromolar concentrations. Molecular docking analysis suggests that …

Island Fox Spatial Ecology And Implications For Management Of Disease, Jessica R. Resnik, William F. Andelt, Thomas R. Stanley, Nathan P. Snow

United States Department of Agriculture Wildlife Services: Staff Publications

Disease, predation, and genetic isolation resulted in 4 of 6 island fox (Urocyon littoralis) subspecies being listed as endangered in 2004. Potential for disease outbreaks continues to pose a major threat to the persistence of these isolated, endemic populations. We examined how roads influence the spatial ecology of San Clemente Island foxes (U. l. clementae), particularly in regard to spread of disease, to provide management recommendations for preventing or minimizing a disease outbreak on San Clemente Island, California, USA. Home range areas (x=0.75 km²) and core areas (x=0.19 km²) of foxes on …

Resistance To Deltamethrin In Prairie Dog (Cynomys Ludovicianus) Fleas In The Field And In The Laboratory, David A. Eads, Dean E. Biggins, Jonathan Bowser, Janet C. Mcallister, Randall L. Griebel, Eddie Childers, Travis M. Livieri, Cristi Painter, Lindsey Sterling Krank, Kristy Bly

United States National Park Service: Publications

Sylvatic plague poses a substantial risk to black-tailed prairie dogs (Cynomys ludovicianus) and their obligate predator, the black-footed ferret (Mustela nigripes). The effects of plague on prairie dogs and ferrets are mitigated using a deltamethrin pulicide dust that reduces the spread of plague by killing fleas, the vector for the plague bacterium. In portions of Conata Basin, Buffalo Gap National Grassland, and Badlands National Park, South Dakota, US, 0.05% deltamethrin has been infused into prairie dog burrows on an annual basis since 2005. We aimed to determine if fleas (Oropsylla hirsuta) in portions of …

Synaptogyrin-2 Influences Replication Of Porcine Circovirus 2, Lianna R. Walker, Taylor B. Engle, Hiep Vu, Emily R. Tosky, Dan J. Nonneman, Timothy P. L. Smith, Tudor Borza, Thomas E. Burkey, Graham S. Plastow, Stephen D. Kachman, Daniel C. Ciobanu

Department of Animal Science: Faculty Publications

Porcine circovirus 2 (PCV2) is a circular single-stranded DNA virus responsible for a group of diseases collectively known as PCV2 Associated Diseases (PCVAD). Variation in the incidence and severity of PCVAD exists between pigs suggesting a host genetic component involved in pathogenesis. A large-scale genome-wide association study of experimentally infected pigs (n = 974), provided evidence of a host genetic role in PCV2 viremia, immune response and growth during challenge. Host genotype explained 64% of the phenotypic variation for overall viral load, with two major Quantitative Trait Loci (QTL) identified on chromosome 7 (SSC7) near the swine leukocyte antigen complex …

Efficacy Of Oral Administration Of Sodium Iodide To Prevent Bovine Respiratory Disease Complex, B. M. Shoemake, B. L. Vander Ley, B. W. Newcomer, M. C. Heller

School of Veterinary and Biomedical Sciences: Faculty Publications

Background: The prevention of bovine respiratory disease complex (BRD) in beef cattle is important to maintaining health and productivity of calves in feeding operations.

Objective: Determine whether BRD bacterial and viral pathogens are susceptible to the lactoperoxidase/hydrogen peroxide/ iodide (LPO/H₂O₂/I^-) system in vitro and to determine whether the oral administration of sodium iodide (NaI) could achieve sufficient concentrations of iodine (I) in the respiratory secretions of weaned beef calves to inactivate these pathogens in vivo.

Animals: Sixteen weaned, apparently healthy, commercial beef calves from the University of Missouri, College of Veterinary Medicine teaching herd. …

Ncuwm Poster Abstract 2018

Nebraska Conference for Undergraduate Women in Mathematics

No abstract provided.

Risk-Enhancing Behaviors Associated With Human Injuries From Bison Encounters At Yellowstone National Park, 2000–2015, Cara Cherry, Kirsten M. Leong, Rick Wallen, Danielle Buttke

United States National Park Service: Publications

Yellowstone National Park is home to the largest bison population on public land in the United States. Although Yellowstone regulations require visitors to remain at least 23 m from bison, since 1980, bison have injured more visitors to Yellowstone than any other animal. We examined a series of bison-related injuries at Yellowstone to evaluate the circumstances of these injuries and to identify common risk-enhancing behaviors that lead to injury. To do this, we analyzed narrative case incident records from law enforcement regarding bison-human encounters in Yellowstone during 2000–2015. Data regarding demographics, preencounter ac- tivities, number of persons involved, type of …

Echinococcus Spp. Tapeworms In North America, Jacey Roche Cerda, Danielle Elise Buttke, Lora Rickard Ballweber

United States National Park Service: Publications

Alveolar and cystic echinococcosis are emerging and re-emerging in Europe, Africa, and Asia. The expansion of Echinococcus spp. tapeworms in wildlife host reservoirs appears to be driving this emergence in some areas. Recent studies suggest a similar phenomenon may be occurring in North America. We describe the context of Echinococcus spp. research in North America, with a specific focus on the contiguous United States. Although studies were conducted in the United States throughout the 1900s on various sylvatic and domestic Echinococcus spp. tapeworm cycles, data are lacking for the past ≈30 years. We review previous research, provide analysis of more …

Endoparasitism Of Rehabilitating Grey Crowned Cranes In Rwanda, Barry K. Hartup, Deo Ruhgazi, Haynes Werner, Oliver Nsengimana

Proceedings of the North American Crane Workshop

Diseases such as parasitism can limit the effectiveness of conservation translocations depending on host-parasite dynamics at the site of release. The Rwanda Wildlife Conservation Association and the Rwandan government are rehabilitating and repatriating grey crowned cranes (Balearica regulorum) from illegal captivity to the wild at Akagera National Park in large numbers. Monitoring of cranes at the fenced soft-release site during 4 time points in 2017 showed 50-67% of fecal samples tested were positive for 1 or more parasites, most commonly nematodes (roundworms) of the Order Ascaridida. The prevalences and species diversity observed in the fecal samples were not …

Innovation: From Small “I” To Large “I”, Sang M. Lee

Department of Management: Faculty Publications

Innovation is the lifeline for every organization. The primary purpose of innovation is to apply new ideas or technologies to create new or added value for the organization. This narrow goal is for small “i”. In the dynamic digital age, however, the goal of innovation should be much more aspirational and noble: “doing well by doing good” for the society at large and humanity. This lofty goal of innovation is for large “I”. In this paper, we review the evolution process of innovation and propose how innovation can disrupt the barriers to creating a smart future, the aspirational goal of …

Osteoarthritis In The Pelvic Limb Of Captive Cranes, Barry K. Hartup, Savannah J. Lauer, Alyson R. Manthei

Proceedings of the North American Crane Workshop

We conducted an epidemiological study of osteoarthritis (OA) among the 15 captive crane species managed at the International Crane Foundation from 1973 to 2016. A retrospective review of 714 medical records found 37 cases of OA in 13 species of cranes and a corresponding period prevalence of OA of 5%. An analysis of the living captive crane flock as of 1 October 2016 (n = 115) found 12 active cases of OA (a point prevalence of 10%), and there was a statistical association between geriatric age classification (i.e., advanced age) and the presence of OA (P < 0.01). The mean age of cranes with OA was 14 years greater than cranes without the disease (P < 0.001). The prevalence estimates of OA from this review were somewhat lower than that from study of museum specimens, but this study similarly identified the tarsal joint as the predominant location of OA lesions in cranes.

Preparing For The Future: 2017–2018 Annual Report

University of Nebraska's National Strategic Research Institute: Publications

3 Letter from the Executive Director Robert Hinson

4 About NSRI-- Combatting WMD. Focusing on Deterrence.

6 Key Accomplishments/ Highlights of Business Operations Research Focus Areas

8 Nuclear Detection and Forensics

10 Active and Passive Defense Against Weapons of Mass Destruction

12 Detection of Chemical and Biological Weapons

14 Consequence Management

16 Mission-Related Research

18 Education & Training

20 Student & Faculty Engagement

22 NSRI/NU Key Journal Articles, 2017–2018

23 NSRI Board of Directors

Complete Genome Sequence Of Moraxella Bovis Strain Epp-63 (300), An Etiologic Agent Of Infectious Bovine Keratoconjunctivitis, John Dustin Loy, Aaron M. Dickey, Michael L. Clawson

School of Veterinary and Biomedical Sciences: Faculty Publications

We report here the complete closed genome sequence of Moraxella bovis strain Epp-63 (300) (Epp63). This strain was isolated from an infectious bovine keratoconjunctivitis (IBK) case in 1963. Since then, Epp63 has been used extensively for IBK research. Consequently, the genome sequence of Epp63 should help elucidate IBK host-pathogen interactions.

Non-Naturally Occurring Porcine Reproductive And Respiratory Syndrome Virus (Prrsv) And Methods Of Using, Hiep Lai Xuan Vu, Fernando Osorio, William W. Laegreid, Asit K. Pattnaik, Fangrui Ma

Nebraska Center for Virology: Faculty Publications

A non-naturally occurring porcine reproductive and respiratory syndrome virus (PRRSV) is provided herein, and methods of making and using the non-naturally occurring PRRSV also are provided.

Better Than Deet Repellent Compounds Derived From Coconut Oil, Junwei J. Zhu, Steven C. Cermak, James A. Kenar, Gary Brewer, Kenneth F. Haynes, David J. Boxler, Paul D. Baker, Desen Wang, Changlu Wang, Andrew Y. Li, Rui-De Xue, Yuan Shen, Fei Wang, Natasha M. Agramonte, Ulrich R. Bernier, Jaires G. De Oliveira Filho, Ligia M.F. Borges, Kristina Friesen, David B. Taylor

Department of Entomology: Faculty Publications

Hematophagous arthropods are capable of transmitting human and animal pathogens worldwide. Vector-borne diseases account for 17% of all infectious diseases resulting in 700,000 human deaths annually. Repellents are a primary tool for reducing the impact of biting arthropods on humans and animals. N,N-Diethyl-meta-toluamide (DEET), the most effective and long-lasting repellent currently available commercially, has long been considered the gold standard in insect repellents, but with reported human health issues, particularly for infants and pregnant women. In the present study, we report fatty acids derived from coconut oil which are novel, inexpensive and highly efficacious repellant compounds. These coconut fatty acids …

Muskrats, James E. Miller

Wildlife Damage Management Technical Series

The muskrat (Ondatra zibethicus) is a common, semi-aquatic rodent native to the United States (Figure 1). It spends its life in aquatic habitats and is well adapted for swimming.

Although muskrats are an important part of native ecosystems, their burrowing and foraging activities can damage agricultural crops, native marshes and water control systems, such as aquaculture and farm ponds and levees. Such damage can significantly impact agricultural crops like rice that rely on consistent water levels for growth.

Muskrats also cause damage by eating agricultural crops, other vegetation, and crayfish, mussels and other aquaculture products. Loss of vegetation …

Wild Turkeys, James E. Miller

Wildlife Damage Management Technical Series

Like other bird and mammal species whose populations have been restored through conservation efforts, wild turkeys (Figure 1) are treasured by many recreationists and outdoor enthusiasts. Wild turkeys have responded positively to wildlife habitat and population management. In some areas, however, their increased populations have led to increased damage to property and agricultural crops, and threats to human health and safety. Turkeys frequent agricultural fields, pastures, vineyards and orchards, as well as some urban and suburban neighborhoods. Because of this, they may cause damage or mistakenly be blamed for damage. Research has found that despite increases in turkey numbers and …

European Starlings, George M. Linz, Ron J. Johnson, James Thiele

United States Department of Agriculture Wildlife Services: Staff Publications

European starlings (Sturnus vulgaris, Sturnidae) are native to Europe, southwest Asia, and North Africa and have successfully established populations on every continent but Antarctica (Rollins et al. 2009). In 1890 and 1891, a member of the American Acclimatization Society, Eugene Scheiffelin, released 100 starlings into New York City’s Central Park, with the objective of introducing all the birds mentioned in the plays of William Shakespeare to North America (Cabe 1993). He was successful, as 16 pairs survived and reproduced prolifically. Starlings reached the Mississippi River in 1928 and were observed on the West Coast in 1942. In a …

Reduction In Musca Domestica Fecundity By Dsrna-Mediated Gene Knockdown, Neil D. Sanscrainte, Hanayo Arimoto, Christy M. Waits, Lucy Y. Li, Dana Johnson, Chris Geden, James Becnel, Alden S. Estep

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

House flies (Musca domestica) are worldwide agricultural pests with estimated control costs at $375 million annually in the U.S. Non-target effects and widespread resistance challenge the efficacy of traditional chemical control. Double stranded RNA (dsRNA) has been suggested as a biopesticide for M. domestica but a phenotypic response due to the induction of the RNAi pathway has not been demonstrated in adults. In this study female house flies were injected with dsRNA targeting actin-5C or ribosomal protein (RP) transcripts RPL26 and RPS6. Ovaries showed highly reduced provisioning and clutch reductions of 94±99% in RP dsRNA treated flies but …

Application Of The Biosafety Ram And Eprotocol Software Programs To Streamline Institutional Biosafety Committee Processes At The Usda-National Animal Disease Center, John P. Bannantine, Karen B. Register, David M. White

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The National Animal Disease Center (NADC) conducts basic and applied research on endemic animal diseases of high priority that adversely affect US livestock production or trade. Experiments conducted at this center vary in range and scope with a subset involving synthetic or recombinant nucleic acids (DNA), microorganisms, and/or animals. Historically, the NADC used hard copy paper and filing systems to catalog and monitor these types of experiments, but to improve communication, tracking, searching, reporting, and documentation of Institutional Biosafety Committee (IBC) actions, this institution has transitioned to using a commercially available software tool to digitally manage protocols in our ongoing …

Livestock Abundance Predicts Vampire Bat Demography, Immune Profiles And Bacterial Infection Risk, Daniel J. Becker, Gábor Á. Czirják, Dmitriy V. Volokhov, Alexandra B. Bentz, Jorge E. Carrera, Melinda S. Camus, Kristen J. Navara, Vladimir E. Chizhikov, M. Brock Fenton, Nancy B. Simmons, Sergio E. Recuenco, Amy T. Gilbert, Sonia Altizer, Daniel G. Streicker

United States Department of Agriculture Wildlife Services: Staff Publications

Human activities create novel food resources that can alter wildlife–pathogen interactions. If resources amplify or dampen, pathogen transmission probably depends on both host ecology and pathogen biology, but studies that measure responses to provisioning across both scales are rare. We tested these relationships with a 4-year study of 369 common vampire bats across 10 sites in Peru and Belize that differ in the abundance of livestock, an important anthropogenic food source. We quantified innate and adaptive immunity from bats and assessed infection with two common bacteria. We predicted that abundant livestock could reduce starvation and foraging effort, allowing for greater …

Genetic Evidence Supports Sporadic And Independent Introductions Of Subtype H5 Low Pathogenic Avian Influenza A Viruses From Wild Birds To Domestic Poultry In North America, Lei Li, Andrew S. Bowman, Thomas J. Deliberto, Mary L. Killian, Scott Krauss, Jacqueline M. Nolting, Mia Kim Torchetti, Andrew M. Ramey, Andrew B. Reeves, David E. Stallknecht, Richard J. Webby, Xiu-Feng Wan

United States Department of Agriculture Wildlife Services: Staff Publications

Wild-bird origin influenza A viruses (IAVs or avian influenza) have led to sporadic outbreaks among domestic poultry in the United States and Canada, resulting in economic losses through the implementation of costly containment practices and destruction of birds. We used evolutionary analyses of virus sequence data to determine that 78 H5 low-pathogenic avian influenza viruses (LPAIVs) isolated from domestic poultry in the United States and Canada during 2001 to 2017 resulted from 18 independent virus introductions from wild birds. Within the wild-bird reservoir, the hemagglutinin gene segments of H5 LPAIVs exist primarily as two cocirculating genetic sublineages, and our findings …

Detection Of Inflammation Via Volatile Cues In Human Urine, Amy R. Gordon, Bruce A. Kimball, Kimmo Sorjonen, Bianka Karshikoff, John Axelsson, Mats Lekander, Johan N. Lundstrom, Mats J. Olsson

United States Department of Agriculture Wildlife Services: Staff Publications

Contagious disease is a major threat to survival, and the cost of relying on the immune system to defeat pathogens is high; therefore, behavioral avoidance of contagious individuals is arguably an adaptive strategy. Animal findings demonstrate the ability to detect and avoid sick individuals by the aid of olfactory cues, and a recent study indicated that human axillary odor also becomes more aversive as a function of immune activation. By injecting healthy human participants with lipopolysaccharide (0.6 ng/kg body weight) to experimentally induce inflammation, this study demonstrates that natural daily rhythms of urine odor—its perceived dimensions and volatile profile—are altered …

Persistent Spillback Of Bovine Tuberculosis From White-Tailed Deer To Cattle In Michigan, Usa: Status, Strategies, And Needs, Kurt C. Vercauteren, Michael J. Lavelle, Henry Campa Iii

United States Department of Agriculture Wildlife Services: Staff Publications

Free-ranging white-tailed deer (Odocoileus virginianus) are believed to be a self-sustaining reservoir for bovine tuberculosis (bTB) in northeastern Lower Michigan, USA. Although a comprehensive control program is in place and on-farm mitigation strategies to curtail bTB transmission between cattle and deer have been implemented for over a decade, cattle and deer continue to become infected with the disease. Thus, renewed motivation to eradicate bTB is needed if that is truly the goal. Recurrent detection of bTB in cattle in the region is of mounting concern for state and federal agricultural agencies, producers, and wildlife managers. Current on-farm mitigation …

Anticoagulant Rodenticide Residues In Game Animals In California, Stella C. Mcmillin, Robert H. Poppenga, Shannon C. Chandler, Deana L. Clifford

United States Department of Agriculture Wildlife Services: Staff Publications

Anticoagulant rodenticides (ARs) are used to control rodents around homes, buildings, and in agriculture. They have been found widely in predatory and scavenging wildlife as a result of secondary exposure and less commonly in herbivores and omnivores from primary exposure. While predators and scavengers have been monitored for AR exposure, very little information is available about AR residues in edible muscle tissue of game animals. Game animals may be exposed to ARs through direct consumption of bait, ingestion of contaminated food or vegetation, or consumption of contaminated prey items. Carcasses of three species of game animals (black bear, wild pigs, …

Gene Expression Profiles Of The Small Intestinal Mucosa Of Dogs Repeatedly Infected With The Cestode Echinococcus Multilocularis, Hirokazu Kouguchi, Takao Irie, Jun Matsumoto, Hidefumi Furuoka, Kenji Ishiwata, Ryo Nakao, Kinpei Yagi

Harold W. Manter Laboratory of Parasitology: Library Materials

The data set presented in this article is related to a previous research article entitled, The timing of worm exclusion in dogs repeatedly infected with the cestode Echinococcus multilocularis (Kouguchi et al., 2016). This article describes the genes >2 fold up- or down-regulated in the first- and repeated-infection groups compared to the healthy controls group. The gene expression profiles were generated using the Agilent-021193 Canine (V2) Gene Expression Microarray (GPL15379). The raw and normalized microarray data have been deposited with the Gene Expression Omnibus (GEO) database under accession number GSE105098.