Digital Commons Network^™

Audiovisual Metadata Platform Pilot Development (Amppd), Final Project Report, Jon W. Dunn, Ying Feng, Juliet L. Hardesty, Brian Wheeler, Maria Whitaker, Thomas Whittaker, Shawn Averkamp, Bertram Lyons, Amy Rudersdorf, Tanya Clement, Liz Fischer

Copyright, Fair Use, Scholarly Communication, etc.

This report documents the experience and findings of the Audiovisual Metadata Platform Pilot Development (AMPPD) project, which has worked to enable more efficient generation of metadata to support discovery and use of digitized and born-digital audio and moving image collections. The AMPPD project was carried out by partners Indiana University Libraries, AVP, University of Texas at Austin, and New York Public Library between 2018-2021.

Ten Simple Rules For Creating A Scientific Web Application, Jessica L. Burnett, Renee Dale, Chung-Yi Hou, Gabriela Palomo-Muoz, Kaitlin Stack Whitney, Steve Aulenbach, Robert Sky Bristol, Denis Valle, Tristan P. Wellman

School of Natural Resources: Faculty Publications

The use of scientific web applications (SWApps) across biological and environmental sciences has grown exponentially over the past decades or so. Although quantitative evidence for such increased use in practice is scant, collectively, we have observed that these tools become more commonplace in teaching, outreach, and in science coproduction (e.g., as decision support tools). Despite the increased popularity of SWApps, researchers often receive little or no training in creating such tools. Although rolling out SWApps can be a relatively simple and quick process using modern, popular platforms like R shiny apps or Tableau dashboards, making them useful, usable, and sustainable …

Late Cretaceous Paleoceanographic Evolution And The Onset Of Cooling In The Santonian At Southern High Latitudes (Iodp Site U1513, Se Indian Ocean), Maria Rose Petrizzo, Kenneth G. Macleod, David K. Watkins, Erik Wolfgring, Brian T. Huber

Department of Earth and Atmospheric Sciences: Faculty Publications

The latest Cenomanian to Santonian sedimentary record recovered at IODP Expedition 369 Site U1513 in the Mentelle Basin (SE Indian Ocean, paleolatitude 60°S at 85 Ma) is studied to interpret the paleoceanographic evolution in the Southern Hemisphere. The planktonic foraminiferal assemblage changes, the depth ecology preferences of different species, and the surface and seafloor temperature inferred from the stable isotopic values measured on foraminiferal tests provide meaningful information to the understanding of the Late Cretaceous climate. The hothouse climate during the Turonian-Santonian, characterized by weak latitudinal temperature gradients and high atmospheric CO₂ concentrations, is followed by a progressive cooling …

Validation Of A Brazilian Portuguese Measure Of Family Resources In A Sample Of Parents To Children With Congenital Zika Virus Syndrome, Sarah Barker Ladd

College of Education and Human Sciences: Dissertations, Theses, and Student Research

In the aftermath of the 2015 Zika virus outbreak in Brazil, thousands of children and their families continue to face challenges associated with Congenital Zika Syndrome, a developmental condition associated with microcephaly and other serious birth defects affecting the central nervous system. Family-centered rehabilitative care is critical to optimize the trajectories of children who have significant developmental disabilities like CZS. These services involve assessing for the presence of family resources that may help to promote positive outcomes for children. Little is known regarding family resources in the context of caring for a child with CZS in Brazil due to the …

The Centennial Of The Pecking Order: Current State And Future Prospects For The Study Of Dominance Hierarchies, Eli D. Strauss, James P. Curley, Daizaburo Shizuka, Elizabeth A. Hobson

School of Biological Sciences: Faculty Publications

A century ago, foundational work by Thorleif Schjelderup-Ebbe described a ‘pecking order’ in chicken societies, where individuals could be ordered according to their ability to exert their influence over their group-mates. Now known as dominance hierarchies, these structures have been shown to influence a plethora of individual characteristics and outcomes, situating dominance research as a pillar of the study of modern social ecology and evolution. Here, we first review some of the major questions that have been answered about dominance hierarchies in the last 100 years.Next,we introduce the contributions to this theme issue and summarize howthey provide ongoing insight in …

Semantically Meaningful Sentence Embeddings, Rojina Deuja

School of Computing: Dissertations, Theses, and Student Research

Text embedding is an approach used in Natural Language Processing (NLP) to represent words, phrases, sentences, and documents. It is the process of obtaining numeric representations of text to feed into machine learning models as vectors (arrays of numbers). One of the biggest challenges in text embedding is representing longer text segments like sentences. These representations should capture the meaning of the segment and the semantic relationship between its constituents. Such representations are known as semantically meaningful embeddings. In this thesis, we seek to improve upon the quality of sentence embeddings that capture semantic information.

The current state-of-the-art models are …

News From The Forwards Taskforce, Heather Turner

The R Journal

Forwards is an R Foundation taskforce working to widen the participation of underrepresented groups in the R project and in related activities, such as the useR! conference. This report rounds up activities of the taskforce during the second half of 2022.

Measuring Foundation Course Modulus Using Falling Weight Deflectometer, Light Weight Deflectometer, And Dynamic Cone Penetration, Bruce Barrett, Kellie Troxel, Brady Dresselhaus, David Hansen

Nebraska Department of Transportation: Research Reports

Phase I results showed that FWD, LWD, and DCP provided valid results and trended with each other at the stations all three tests were run. This gives confidence that any test method is reliable when used on an exposed bituminous foundation course.

The results of Phase I and Phase II indicate that using FWD testing after concrete is built does not provide an accurate modulus of the foundation course. As demonstrated through the statistical analysis, foundation course moduli cannot be reliably calculated by using FWD on top of doweled concrete pavements and back-calculated using Darwin software or ME Design. Additionally, …

Statistical Mediation Analysis In Regression Discontinuity Design For Causal Inference, Donna Chen

College of Education and Human Sciences: Dissertations, Theses, and Student Research

Regression discontinuity designs (RDDs) are the most robust quasi-experimental design, but current statistical models are limited to estimates for the simple causal relationship between only two variables: the independent and dependent variables. In practice, intervening variables (or mediators) are often observed as part of the causal chain. Mediators explain the why and how a treatment or intervention works. Therefore, mediation and RDD analysis combined can be a useful tool in identifying key components or processes that make intervention programs effective while making causal inferences for improving student achievement, despite natural constraints, limitations, and ethical considerations. Without an integrated framework of …

The Evaluation Of Comprehensibility In Non-Native English Speakers, Quianna Javernick

College of Education and Human Sciences: Dissertations, Theses, and Student Research

As of 2020, accent modification instruction was added to a speech-language pathologist's Scope of Practice. This elective service is for individuals who wish to change or modify their speech patterns to increase speech clarity. In developing assessment and instructional programs geared towards accent modification instruction, considerations must be made for the listener and the speaker. A range of accent modification assessment materials and instruction programs currently exist. The purpose of this study was to determine if a simplified Likert-type rating scale, ranging from "not comprehensible" to "comprehensibility unaffected," could serve as a quick tool to measure a non-native English speaker's …

Measuring Foundation Course Modulus Using Falling Weight Deflectometer, Light Weight Deflectometer, And Dynamic Cone Penetration, Bruce Barrett, Kellie Troxel, Brady Dresselhaus, David Hansen

Nebraska Department of Transportation: Research Reports

The purpose of this investigation was to determine the feasibility of measuring bituminous foundation course modulus under concrete roadways by comparing testing results derived before and after paving using FWD, Light Weight Deflectometer (LWD), and Dynamic Cone Penetrometer (DCP). The foundation course modulus was determined using FWD data and Darwin design software (‘93 AASHTO). Results from Phase I data collection, which occurred prior to pavement placement, provided a baseline for comparison. The maximum modulus was 398,000 PSI and the minimum was 85,000 PSI, yielding a range of 315,000 PSI and an average modulus of 123,000 PSI over the length of …

Distillers' Grains: Past, Present, And Future Economic Analyses, Daniel E. Gertner

Department of Agricultural Economics: Dissertations, Theses, and Student Research

This thesis is comprised of four chapters, each of which discusses or conducts economic research related to the distillers’ grains market. The first three chapters are meant to be standalone papers. Chapter four provides potential paths forward in distillers’ grains research based on the findings of the first three chapters and concludes the thesis.

The first chapter conducts a comprehensive literature review that categorizes and summarizes economic research on distillers’ grains products. This section shows how the physical market has moved beyond the current academic understanding of market products and structure. Existing research finds that traditional distillers’ grains products positively …

Reintegrating Biology Through The Nexus Of Energy, Information, And Matter, Kim L. Hoke, Sara L. Zimmer, Adam B. Roddy, Mary Jo Ondrechen, Craig E. Williamson, Nicole R. Buan

Department of Biochemistry: Faculty Publications

Information, energy, and matter are fundamental properties of all levels of biological organization, and life emerges from the continuous flux of matter, energy, and information. This perspective piece defines and explains each of the three pillars of this nexus. We propose that a quantitative characterization of the complex interconversions between matter, energy, and information that compose this nexus will help us derive biological insights that connect phenomena across different levels of biological organization. We articulate examples from multiple biological scales that highlight how this nexus approach leads to a more complete understanding of the biological system. Metrics of energy, information, …

Sex And Nest Type Influence Avian Blood Parasite Prevalence In A High-Elevation Bird Community, Marina D. Rodriguez, Paul F. Doherty, Antoinette J. Piaggio, Kathryn P. Huyvaert

United States Department of Agriculture Wildlife Services: Staff Publications

Background: The prevalence of avian haemosporidian parasites and the factors influencing infection in the Colorado Rocky Mountains are largely unknown. With climate change expected to promote the expansion of vector and avian blood parasite distributions, baseline knowledge and continued monitoring of the prevalence and diversity of these parasites is needed.

Methods: Using an occupancy modeling framework, we conducted a survey of haemosporidian parasite species infecting an avian community in the Colorado Rocky Mountains in order to estimate the prevalence and diversity of blood parasites and to investigate species-level and individual-level characteristics that may influence infection.

Results: We estimated the prevalence …

Systematic Manipulation Of The Publication Process: Flowcharts And Infographics [English], Jigisha Patel, Simone Ragavooloo, Cat Chatfield

Copyright, Fair Use, Scholarly Communication, etc.

Includes definition of systematic manipulation of the publication process, suspicious submission patterns, suspicious patterns in the content of manuscripts/articles, suspicious patterns around peer review, how to investigate and prevent further publication manipulation, information on the COPE Publishers' Forum, tables and flow charts with recommended actions, and a list of further reading.

2019ncovr – A Comprehensive Genomic Resource For Sars-Cov-2 Variant Surveillance And Covid-19 Control, Guoquing Lu, Etsuko N. Moriyama

School of Biological Sciences: Faculty Publications

No abstract provided.

Two New Species Of Nothochodaeus Nikolajev, 2005 From Palawan Island, Philippines (Coleoptera: Scarabaeoidea: Ochodaeidae), Jean-Bernard Huchet

Insecta Mundi

Nothochodaeus minotaurus Huchet, new species, and N. huxleyi Huchet, new species (Coleoptera: Scarabaeoidea: Ochodaeidae), from Palawan Island, Philippines, are described and illustrated.

Following my study of the Ochodaeidae of the Philippine archipelago (Huchet 2014a, 2014b, 2017, 2018, 2019), I describe here two new species of the genus Nothochodaeus Nikolajev, respectively N. minotaurus Huchet, new species, and N. huxleyi Huchet, new species, bringing to four species, all endemic, the representatives of this genus in the archipelago. Both species described here are illustrated and compared with their closest relatives. These new species originate from the island of Palawan. This discovery …

Genome-Wide Dna Polymorphism Analysis And Molecular Marker Development For The Setaria Italica Variety “Ssr41” And Positional Cloning Of The Setaria White Leaf Sheath Gene Siwls1, Hui Zhang, Sha Tang, James C. Schnable, Qiang He, Yuanzhu Gao, Mingzhao Luo, Guanqing Jia, Baili Feng, Hui Zhi, Xianmin Diao

Department of Agronomy and Horticulture: Faculty Publications

Genome-wide DNA polymorphism analysis and molecular marker development are important for forward genetics research and DNA marker-assisted breeding. As an ideal model system for Panicoideae grasses and an important minor crop in East Asia, foxtail millet (Setaria italica) has a high-quality reference genome as well as large mutant libraries based on the “Yugu1” variety. However, there is still a lack of genetic and mutation mapping tools available for forward genetics research on S. italica. Here, we screened another S. italica genotype, “SSR41”, which is morphologically similar to, and readily cross-pollinates with, “Yugu1”. High-throughput resequencing of “SSR41” …

Cybert: Cybersecurity Claim Classification By Fine-Tuning The Bert Language Model, Kimia Ameri, Michael Hempel, Hamid Sharif, Juan Lopez Jr., Kalyan Perumalla

Department of Electrical and Computer Engineering: Faculty Publications

We introduce CyBERT, a cybersecurity feature claims classifier based on bidirectional encoder representations from transformers and a key component in our semi-automated cybersecurity vetting for industrial control systems (ICS). To train CyBERT, we created a corpus of labeled sequences from ICS device documentation collected across a wide range of vendors and devices. This corpus provides the foundation for fine-tuning BERT’s language model, including a prediction-guided relabeling process. We propose an approach to obtain optimal hyperparameters, including the learning rate, the number of dense layers, and their configuration, to increase the accuracy of our classifier. Fine-tuning all hyperparameters of the resulting …

Higher Sound Levels In K-12 Classrooms Correlate To Lower Math Achievement Scores, Laura Caroline Brill, Lily M. Wang

Durham School of Architectural Engineering and Construction: Faculty Publications

Sound levels from occupied classrooms have been gathered from 220 classrooms across four grade levels (3, 5, 8 and 11) over six school days each and processed with k-means clustering into speech and non-speech clusters. Three metrics describing the classroom acoustics, including the average daily A-weighted equivalent level for non-speech, the average daily difference between the A-weighted equivalent levels for speech and nonspeech (a signal to noise ratio), and the mid-frequency averaged reverberation time, were analyzed against classroom-aggregated standardized reading and math achievement test scores, while controlling for classroom demographics including socioeconomic status. Interactions between the metrics and demographics were …

Roots Of Justice: Historical Truth And Reconciliation In Lincoln And Nebraska, Veronica Nohemi Duran, Crystal Dunning, Kathleen A. Johnson, Paul Olson

Truth and Reconciliation History Project

A bibliography of resources about the history in Nebraska of Native Americans, African Americans, Latinos, Asian Americans and Recent Refugees

We hope that these five bibliographies will prove fruitful in helping us to understand what our history has been, where we have gone astray, and what we can do to help bring about reconciliation in our community and in our state.

The discovery of what has happened in Nebraska in the last hundred and seventy years is not an easy task, but it is our goal in putting together this bibliography to begin that task. By putting together a picture …

An Ethnographic Interpretation Of Latino Perspectives On Family Engagement In Education, Mary Pollema

Department of Teaching, Learning, and Teacher Education: Theses and Other Student Research

In this period of intense demographic change and educational reform that strongly emphasizes the imperative of family engagement, yet implicates minority culture parents as not being involved, it behooves the field of education to take a closer look at the rigidity that schools utilize in their normalized perceptions and practices of parental involvement. Effective involvement can consist of a number of different activities, but only a few are acknowledged in educational discourse. Therefore, it is important to hear the perspectives of families of other cultures in order to bring to light new understanding that will assist schools in building stronger …

Information Extraction And Classification On Journal Papers, Lei Yu

School of Computing: Dissertations, Theses, and Student Research

The importance of journals for diffusing the results of scientific research has increased considerably. In the digital era, Portable Document Format (PDF) became the established format of electronic journal articles. This structured form, combined with a regular and wide dissemination, spread scientific advancements easily and quickly. However, the rapidly increasing numbers of published scientific articles requires more time and effort on systematic literature reviews, searches and screens. The comprehension and extraction of useful information from the digital documents is also a challenging task, due to the complex structure of PDF.

To help a soil science team from the United States …

Cognitive Effects Of Alcohol Use And Sleep Disruption In College Students, Taylor English

Department of Psychology: Dissertations, Theses, and Student Research

Alcohol use and sleep disruption are highly prevalent amongst college students, yet their combined effects on cognitive functioning and subsequent classroom performance have not been fully examined. Alcohol use has been shown to negatively impact cognitive functioning, especially in college students without fully matured brain regions. This has led to decreases in academic functioning and increases in college dropout. Disruptions in sleep functioning can lead to both lapses in attention and an overall decrease in attention, which can negatively impact learning in a classroom environment.

Participants were 96 undergraduate students who were invited to participate based on responses from a …

Open Data Practices Among Users Of Primary Biodiversity Data, Caitlin P. Mandeville

Harold W. Manter Laboratory of Parasitology: Library Materials

Presence-only biodiversity data are increasingly relied on in biodiversity, ecology, and conservation research, driven by growing digital infrastructures that support open data sharing and reuse. Recent reviews of open biodiversity data have clearly documented the value of data sharing, but the extent to which the biodiversity research community has adopted open data practices remains unclear. We address this question by reviewing applications of presence-only primary biodiversity data, drawn from a variety of sources beyond open databases, in the indexed literature. We characterize how frequently researchers access open data relative to data from other sources, how often they share newly generated …

Two New Species Of Hermeuptychia From North America And Three Neotype Designations (Nymphalidae: Satyrinae), Qian Cong, Eduardo P. Barbosa, Mario A. Marín, André V. L. Freitas, Gerardo Lamas, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

Abstract

Two new species of Hermeuptychia Forster, 1964 are described. Hermeuptychia sinuosa Grishin, sp. n. (type locality Guatemala: El Progreso, Morazán) is an isolated member of the genus that does not readily fit into known species groups, as suggested by its distinct male and female genitalia and COI DNA barcode sequences. It is distinguished from its congeners by prominently wavy submarginal lines, rounder wings and distinctive genitalia, and can typically be identified by a white dot, instead of an eyespot, near the ventral hindwing apex. Hermeuptychia occidentalis Grishin, sp. n. (type locality Mexico: Guerrero, Acapulco) belongs to the Hermeuptychia sosybius …

Social Media, Populism, And Covid-19: Weibo Users’ Reactions To Anti-Chinese Discourse, Theresa Catalano, Peiwen Wang

Department of Teaching, Learning, and Teacher Education: Faculty Publications

US government communication about the COVID-19 pandemic, particularly the ‘Chinese virus’ discourse adopted by Donald Trump and his administration, has led to real-world violence and triggered heated discussions across social media sites, including Sina Weibo (aka Chinese Twitter). The current study explores the relationship between populism and social media by examining how Sina Weibo users respond to Trump’s communication on the virus. Employing multimodal critical discourse analysis, we examine both visual and verbal strategies used to build counter-discourses that challenge the use of terms such as ‘Chinese virus’. Findings demonstrate the potential of Weibo as a platform of resistance and …

Private Interests In The Public Sphere: The Evolution Of Private Interest Before And During The American Revolution, Jensen Alexander Humphrey

Department of Political Science: Dissertations, Theses, and Student Research

From the mid-1600s to the mid-1700s, mercantilism was the dominant economic doctrine practiced in the politics of the English Empire. To balance foreign trade in favor of exports and bolster the national wealth, however, mercantilists argued in favor of centralizing private commercial interests in the public realm, effectively redefining the public interest as a composition of narrow merchant interests. Restrictive mercantilist policies directed at the American colonies worsened over time, and colonists turned to the theories of John Locke to argue that English mercantilism prohibited colonists from fully realizing their rights to liberty and property. This association of mercantilism with …

The Effects Of The Visual Environment On K-12 Student Achievement, Michael Kuhlenengel, Iason Konstantzos, Clarence E. Waters

Durham School of Architectural Engineering and Construction: Faculty Publications

The varying indoor environments among educational buildings can have an impact on students’ ability to learn. This study looks at field data from 220 classrooms in the Midwest, United States, over a two-year period, to analyze the effects of the visual environment on student achievement. The visual environmental metrics considered within this scope include the three new view metrics introduced within the EN 17037 “Daylight of Buildings” standard (Horizontal Sight Angle, Outside Distance of View, and Number of View Layers), as well as standard daylight and electric lighting metrics, focusing on light availability and glare. To capture student achievement, math …

Great River Legs, Laura Madeline Wiseman

Zea E-Books Collection

Great River Legs is a lyric collection of prose poetry, creative nonfiction, and found poetry. This creative response documents my 1,398 mile, 25-day bicycle ride from Muscatine, Iowa, to Baton Rouge, Louisiana, between October 2017–March 2018. The journey took place in legs over breaks during the school year, with two additional back-to-back weekend rides that started the adventure.

In her latest book, Great River Legs, Laura Madeline Wiseman takes you on an intimate journey as she weaves in and out of a cross-country, long distance bike ride. In this beautifully curated book that includes prose poetry, creative non-fiction and …