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Four-Field Hamiltonian Fluid Closures Of The One-Dimensional Vlasov-Poisson Equation, C. Chandre, Bradley Allan Shadwick Jun 2022

Four-Field Hamiltonian Fluid Closures Of The One-Dimensional Vlasov-Poisson Equation, C. Chandre, Bradley Allan Shadwick

Department of Physics and Astronomy: Faculty Publications

We consider a reduced dynamics for the first four fluid moments of the one-dimensional Vlasov-Poisson equation, namely, the fluid density, fluid velocity, pressure and heat flux. This dynamics depends on an equation of state to close the system. This equation of state (closure) connects the fifth order moment—related to the kurtosis in velocity of the Vlasov distribution—with the first four moments. By solving the Jacobi identity, we derive an equation of state which ensures that the resulting reduced fluid model is Hamiltonian. We show that this Hamiltonian closure allows symmetric homogeneous equilibria of the reduced fluid model to be stable.


The Pho1;2a'-M1.1 Allele Of Phosphate1 Conditions Misregulation Of The Phosphorus Starvation Response In Maize (Zea Mays Ssp. Mays L.), Ana Laura Alonso-Nieves, M. Nancy Salazar-Vidal, J. Vladimir Torres-Rodríguez, Leonardo M. Pérez-Vázquez, Julio A. Massange-Sánchez, C. Stewart Gillmor, Ruairidh J. H. Sawers Jun 2022

The Pho1;2a'-M1.1 Allele Of Phosphate1 Conditions Misregulation Of The Phosphorus Starvation Response In Maize (Zea Mays Ssp. Mays L.), Ana Laura Alonso-Nieves, M. Nancy Salazar-Vidal, J. Vladimir Torres-Rodríguez, Leonardo M. Pérez-Vázquez, Julio A. Massange-Sánchez, C. Stewart Gillmor, Ruairidh J. H. Sawers

Center for Plant Science Innovation: Faculty Publications

Plant PHO1 proteins play a central role in the translocation and sensing of inorganic phosphate. The maize (Zea mays ssp. mays) genome encodes two co-orthologs of the Arabidopsis PHO1 gene, designated ZmPho1;2a and ZmPho1;2b. Here, we report the characterization of the transposon footprint allele Zmpho1;2a'-m1.1, which we refer to hereafter as pho1;2a. The pho1;2a allele is a stable derivative formed by excision of an Activator transposable element from the ZmPho1;2a gene. The pho1;2a allele contains an 8-bp insertion at the point of transposon excision that disrupts the reading frame and is predicted to …


Dj-1 Is Not A Deglycase And Makes A Modest Contribution To Cellular Defense Against Methylglyoxal Damage In Neurons, Melissa Conti Mazza, Sarah C. Shuck, Jiusheng Lin, Michael Moxley, John Termini, Mark R. Cookson, Mark A. Wilson Jun 2022

Dj-1 Is Not A Deglycase And Makes A Modest Contribution To Cellular Defense Against Methylglyoxal Damage In Neurons, Melissa Conti Mazza, Sarah C. Shuck, Jiusheng Lin, Michael Moxley, John Termini, Mark R. Cookson, Mark A. Wilson

Department of Biochemistry: Faculty Publications

Human DJ-1 is a cytoprotective protein whose absence causes Parkinson's disease and is also associated with other diseases. DJ-1 has an established role as a redox-regulated protein that defends against oxidative stress and mitochondrial dysfunction. Multiple studies have suggested that DJ-1 is also a protein/nucleic acid deglycase that plays a key role in the repair of glycation damage caused by methylglyoxal (MG), a reactive α-keto aldehyde formed by central metabolism. Contradictory reports suggest that DJ-1 is a glyoxalase but not a deglycase and does not play a major role in glycation defense. Resolving this issue is important for understanding how …


Genes Involved In Feed Efficiency Identified In A Meta-Analysis Of Rumen Tissue From Two Populations Of Beef Steers, Amanda K. Lindholm-Perry, Allison M. Meyer, Rebecca J. Kern-Lunbery, Hannah C. Cunningham-Hollinger, Taran H. Funk, Brittney N. Keel Jun 2022

Genes Involved In Feed Efficiency Identified In A Meta-Analysis Of Rumen Tissue From Two Populations Of Beef Steers, Amanda K. Lindholm-Perry, Allison M. Meyer, Rebecca J. Kern-Lunbery, Hannah C. Cunningham-Hollinger, Taran H. Funk, Brittney N. Keel

Roman L. Hruska U.S. Meat Animal Research Center: Reports

In cattle, the rumen is an important site for the absorption of feed by-products released by bacterial fermentation, and variation in ruminal function plays a role in cattle feed efficiency. Studies evaluating gene expression in the rumen tissue have been performed prior to this. However, validating the expression of genes identified in additional cattle populations has been challenging. The purpose of this study was to perform a meta-analysis of the ruminal transcriptome of two unrelated populations of animals to identify genes that are involved in feed efficiency across populations. RNAseq data from animals with high and low residual feed intake …


Genomic Tools Reveal Complex Social Organization Of An Invasive Large Mammal (Sus Scrofa), Chelsea L. Titus, Courtney F. Bowden, Timothy J. Smyser, Stephen L. Webb, James C. Beasley Jun 2022

Genomic Tools Reveal Complex Social Organization Of An Invasive Large Mammal (Sus Scrofa), Chelsea L. Titus, Courtney F. Bowden, Timothy J. Smyser, Stephen L. Webb, James C. Beasley

United States Department of Agriculture Wildlife Services: Staff Publications

A comprehensive understanding of sociality in wildlife is vital to optimizing conservation and management efforts. However, sociality is complicated, especially for widely distributed species that exhibit substantive behavioral plasticity. Invasive wild pigs (Sus scrofa), often representing hybrids of European wild boar and domestic pigs, are among the most adaptable and widely distributed large mammals. The social structure of wild pigs is believed to be similar to European wild boar, consisting of matriarchal groups (sounders) and solitary males. However, wild pig social structure is understudied and largely limited to visual observations. Using a hierarchical approach, we incorporated genomic tools …


Axial Hypersensitivity Is Associated With Aberrant Nerve Sprouting In A Novel Model Of Disc Degeneration In Female Sprague Dawley Rats, David J. Lillyman, Fei San Lee, Evie C. Barnett, Tyler J. Miller, Moreno Lozano Alvaro, Henry C. Drvol, Rebecca A. Wachs Jun 2022

Axial Hypersensitivity Is Associated With Aberrant Nerve Sprouting In A Novel Model Of Disc Degeneration In Female Sprague Dawley Rats, David J. Lillyman, Fei San Lee, Evie C. Barnett, Tyler J. Miller, Moreno Lozano Alvaro, Henry C. Drvol, Rebecca A. Wachs

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Chronic low back pain is a global socioeconomic crisis and treatments are lacking in part due to inadequate models. Etiological research suggests that the predominant pathology associated with chronic low back pain is intervertebral disc degeneration. Various research teams have created rat models of disc degeneration, but the clinical translatability of these models has been limited by an absence of robust chronic painlike behavior. To address this deficit, disc degeneration was induced via an artificial annular tear in female Sprague Dawley rats. The subsequent degeneration, which was allowed to progress for 18-weeks, caused a drastic reduction in disc volume. Furthermore, …


Tunable Physical Properties In Bi-Based Layered Supercell Multiferroics Embedded With Au Nanoparticles, Jianan Shen, Zihao He, Di Zhang, Ping Lu, Julia Deitz, Zhongxia Shang, Matias Kalaswad, Haohan Wang, Xiaoshan S. Xu, Haiyan Wang Jun 2022

Tunable Physical Properties In Bi-Based Layered Supercell Multiferroics Embedded With Au Nanoparticles, Jianan Shen, Zihao He, Di Zhang, Ping Lu, Julia Deitz, Zhongxia Shang, Matias Kalaswad, Haohan Wang, Xiaoshan S. Xu, Haiyan Wang

Department of Physics and Astronomy: Faculty Publications

Multiferroic materials are an interesting functional material family combining two ferroic orderings, e.g., ferroelectric and ferromagnetic orderings, or ferroelectric and antiferromagnetic orderings, and find various device applications, such as spintronics, multiferroic tunnel junctions, etc. Coupling multiferroic materials with plasmonic nanostructures offers great potential for optical-based switching in these devices. Here, we report a novel nanocomposite system consisting of layered Bi1.25AlMnO3.25 (BAMO) as a multiferroic matrix and well dispersed plasmonic Au nanoparticles (NPs) and demonstrate that the Au nanoparticle morphology and the nanocomposite properties can be effectively tuned. Specifically, the Au particle size can be tuned from …


Us Consumer Identification Of The Health Benefits Of Dietary Fiber And Consideration Of Fiber When Making Food Choices, Christopher Gustafson, Devin J. Rose Jun 2022

Us Consumer Identification Of The Health Benefits Of Dietary Fiber And Consideration Of Fiber When Making Food Choices, Christopher Gustafson, Devin J. Rose

Department of Agricultural Economics: Faculty Publications

The purposes of this study were to (1) determine beliefs in the health benefits of dietary fiber, an under-consumed nutrient of public health concern, and (2) determine the relationship between beliefs about dietary fiber and consideration of fiber when making food choices. We conducted a nationally representative within-subject randomized online survey of 42,018 US primary shoppers in May–June 2021. Participants selected health benefits they believed were associated with consumption of fiber from a list of six benefits recognized by the Food and Drug Administration (FDA), one indirect benefit, and one unrelated benefit. Respondents then indicated which nutrients, if any, they …


Sorghum Association Panel Whole-Genome Sequencing Establishes Cornerstone Resource For Dissecting Genomic Diversity, J. Lucas Boatwright, Sirjan Sapkota, Hongyu Jin, James C. Schnable, Zachary Brenton, Richard Boyles, Stephen Kresovich Jun 2022

Sorghum Association Panel Whole-Genome Sequencing Establishes Cornerstone Resource For Dissecting Genomic Diversity, J. Lucas Boatwright, Sirjan Sapkota, Hongyu Jin, James C. Schnable, Zachary Brenton, Richard Boyles, Stephen Kresovich

Department of Agronomy and Horticulture: Faculty Publications

Association mapping panels represent foundational resources for understanding the genetic basis of phenotypic diversity and serve to advance plant breeding by exploring genetic variation across diverse accessions. We report the whole-genome sequencing (WGS) of 400 sorghum (Sorghum bicolor (L.) Moench) accessions from the Sorghum Association Panel (SAP) at an average coverage of 38× (25–72×), enabling the development of a high-density genomic marker set of 43 983 694 variants including single-nucleotide polymorphisms (approximately 38 million), insertions/deletions (indels) (approximately 5 million), and copy number variants (CNVs) (approximately 170 000). We observe slightly more deletions among indels and a much higher prevalence …


Tracing Geochemical Sources And Health Risk Assessment Of Uranium In Groundwater Of Arid Zone Of India, P. Pandit, Atul Saini, Sabarathinam Chidambaram, Vinod Kumar, Banjarani Panda, A. L. Ramanathan, Netrananda Sahu, A. K. Singh, Rohit Mehra Jun 2022

Tracing Geochemical Sources And Health Risk Assessment Of Uranium In Groundwater Of Arid Zone Of India, P. Pandit, Atul Saini, Sabarathinam Chidambaram, Vinod Kumar, Banjarani Panda, A. L. Ramanathan, Netrananda Sahu, A. K. Singh, Rohit Mehra

Nebraska Water Center: Faculty Publications

Water quality degradation and metal contamination in groundwater are serious concerns in an arid region with scanty water resources. This study aimed at evaluating the source of uranium (U) and potential health risk assessment in groundwater of the arid region of western Rajasthan and northern Gujarat. The probable source of vanadium (V) and fluorine (F) was also identified. U and trace metal concentration, along with physicochemical characteristics were determined for 265 groundwater samples collected from groundwater of duricrusts and palaeochannels of western Rajasthan and northern Gujarat. The U concentration ranged between 0.6 and 260 μg L−1 with a mean …


Fossils On The Floor Mosaics In The Rotunda Of The Nebraska State Capitol Second Edition, Robert F. Diffendal Jr. Jun 2022

Fossils On The Floor Mosaics In The Rotunda Of The Nebraska State Capitol Second Edition, Robert F. Diffendal Jr.

Robert F. Diffendal, Jr., Publications

The idea for this project arose during a field trip to the Nebraska State Capitol led by my long-time friend and colleague, Joe Hannibal, of the Cleveland Museum of Natural History, during the Geological Society of America’s North-Central Section Meeting in Lincoln, Nebraska, on Saturday, April 26, 2014. One of Joe’s interests is historical buildings and their building stones. He put together a very useful guidebook to the building and its decorative stones (Hannibal, 2014) that we used on our tour.

One of the many places that we visited was the State Capitol Archives, located in the basement, where the …


Age-Dependent White Matter Disruptions After Military Traumatic Brain Injury: Multivariate Analysis Results From Enigma Brain Injury, Heather C. Bouchard, Delin Sun, Emily L. Dennis, Mary R. Newsome, Seth G. Disner, Jeremy Elman, Annelise Silva, Carmen Velez, Andrei Irimia, Nicholas D. Davenport, Scott R. Sponheim, Carol E. Franz, William S. Kremen, Michael J. Coleman, M. Wright Williams, Elbert Geuze, Inga K. Koerte, Martha E. Shenton, Maheen M. Adamson, Raul Coimbra, Gerald Grant, Lori Shutter, Mark S. George, Ross D. Zafonte, Thomas W. Mcallister, Murray B. Stein, Paul M. Thompson, Elisabeth A. Wilde, David F. Tate, Aristeidis Sotiras, Rajendra A. Morey Jun 2022

Age-Dependent White Matter Disruptions After Military Traumatic Brain Injury: Multivariate Analysis Results From Enigma Brain Injury, Heather C. Bouchard, Delin Sun, Emily L. Dennis, Mary R. Newsome, Seth G. Disner, Jeremy Elman, Annelise Silva, Carmen Velez, Andrei Irimia, Nicholas D. Davenport, Scott R. Sponheim, Carol E. Franz, William S. Kremen, Michael J. Coleman, M. Wright Williams, Elbert Geuze, Inga K. Koerte, Martha E. Shenton, Maheen M. Adamson, Raul Coimbra, Gerald Grant, Lori Shutter, Mark S. George, Ross D. Zafonte, Thomas W. Mcallister, Murray B. Stein, Paul M. Thompson, Elisabeth A. Wilde, David F. Tate, Aristeidis Sotiras, Rajendra A. Morey

Center for Brain, Biology, and Behavior: Faculty Publications

Mild Traumatic brain injury (mTBI) is a signature wound in military personnel, and repetitive mTBI has been linked to age-related neurogenerative disorders that affect white matter (WM) in the brain. However, findings of injury to specific WM tracts have been variable and inconsistent. This may be due to the heterogeneity of mechanisms, etiology, and comorbid disorders related to mTBI. Non-negative matrix factorization (NMF) is a data-driven approach that detects covarying patterns (components) within high-dimensional data. We applied NMF to diffusion imaging data from military Veterans with and without a self-reported TBI history. NMF identified 12 independent components derived from fractional …


Precedents Ignored: Erroneous Applications Of Due Process Precedents Lead To Unjust Consequences For Pretrial Detainees And A Lack Of Accountability For Jailers—Whitney V. City Of St. Louis, 887 F.3d 857 (8th Cir. 2018)., Deena Keilany Jun 2022

Precedents Ignored: Erroneous Applications Of Due Process Precedents Lead To Unjust Consequences For Pretrial Detainees And A Lack Of Accountability For Jailers—Whitney V. City Of St. Louis, 887 F.3d 857 (8th Cir. 2018)., Deena Keilany

Nebraska Law Review

Mass incarceration has led to the confinement of 2.3 million individuals in the United States,despite a steady decline in crime rates since the 1990s.An already strained carceral system,now operating against the backdrop of a nation reeling from the global COVID-19 pandemic,has experienced an influx of detainees as demonstrators are periodically arrested for protesting the very institutions that are sending them to jail.As demonstrators are arrested and detained, often for minor offenses, many people who have not been touched by the criminal justice system before are getting a glimpse at detention facility conditions.Mass arrests and the impacts of COVID-19 on the …


The New Qualified Immunity Quandary, Justin C. Van Orsdol Jun 2022

The New Qualified Immunity Quandary, Justin C. Van Orsdol

Nebraska Law Review

With increased media coverage of excessive force cases, we may someday achieve meaningful reform of the qualified immunity doctrine. But with Congress’s inability to accomplish major legislation in the current political climate, it is doubtful that qualified immunity will be reformed, much less abolished, anytime in the near future. Unless—or until—Congress figures out a way to meaningfully reform qualified immunity, we are left with the patchwork of decisions from the federal appellate courts. Qualified immunity cases and scholarship are riddled with wildly varying approaches to what constitutes “clearly established law” and whether courts should return the mandatory sequencing in Saucier …


Spring Field Report, March-May 2022, W. Ross Silcock Jun 2022

Spring Field Report, March-May 2022, W. Ross Silcock

Nebraska Bird Review

This spring there was a large number of interesting reports generated by active field observers, particularly in the west, where our knowledge continues to be broadened in all aspects. The main takeaway this spring was the inordinate plethora of species that matched or exceeded early arrival dates listed in BONO. There were no fewer than 70 species in this category, involving most families and genera, suggesting some overall influence on migration timing. Perhaps exceptions to these early arrivals were some lingering waterfowl and gulls although terns arrived early. Fully 50 of the early arrivers were passerines, notably including nine species …


Altered Collective Mitochondrial Dynamics In The Arabidopsis Msh1 Mutant Compromising Organelle Dna Maintenance, Joanna M. Chustecki, Ross D. Etherington, Daniel J. Gibbs, Iain G. Johnston Jun 2022

Altered Collective Mitochondrial Dynamics In The Arabidopsis Msh1 Mutant Compromising Organelle Dna Maintenance, Joanna M. Chustecki, Ross D. Etherington, Daniel J. Gibbs, Iain G. Johnston

Department of Biochemistry: Faculty Publications

Mitochondria form highly dynamic populations in the cells of plants (and almost all eukaryotes). The characteristics and benefits of this collective behaviour, and how it is influenced by nuclear features, remain to be fully elucidated. Here, we use a recently developed quantitative approach to reveal and analyse the physical and collective ‘social’ dynamics of mitochondria in an Arabidopsis msh1 mutant where the organelle DNA maintenance machinery is compromised. We use a newly created line combining the msh1 mutant with mitochondrially targeted green fluorescent protein (GFP), and characterize mitochondrial dynamics with a combination of single-cell time-lapse microscopy, computational tracking, and network …


Integrating Biodiversity Content: Iczn -> Zoobank -> Institutional Repository -> Internet Archive, Sue Ann Gardner, Paul Royster Jun 2022

Integrating Biodiversity Content: Iczn -> Zoobank -> Institutional Repository -> Internet Archive, Sue Ann Gardner, Paul Royster

University of Nebraska-Lincoln Libraries: Presentations

Background

With rapidly advancing global warming and the concomitant disruptive effects on life on Earth, documenting species is urgent (Ceballos et al., 2020). Taxonomists are keenly aware that they must do all that they can to document species before their demise. As of 2012, the International Commission on Zoological Nomenclature (ICZN, 1999; 2012) began to allow electronic publication of nomenclatural acts (resulting in the official naming of animal species).

Problem

Even though 10 years have passed since changes to the codification regarding the registration of animal species names, repository managers and animal taxonomists may not be collaborating to their fullest …


Once Mentally Ill, Always So? Maybe Yes. Maybe No: Addressing The 18 U.S.C. § 922(G)(4) Circuit Split And Lifetime Gun Bans For The (Formerly) Mentally Ill, Melissa J. Araiza Jun 2022

Once Mentally Ill, Always So? Maybe Yes. Maybe No: Addressing The 18 U.S.C. § 922(G)(4) Circuit Split And Lifetime Gun Bans For The (Formerly) Mentally Ill, Melissa J. Araiza

Nebraska Law Review

Under 18 U.S.C. § 922(g)(4), an individual who is adjudicated as mentally ill or who has received a prior involuntary commitment to a mental health institution may not possess a firearm.This federal code section was first established in the late 1960s, yet it remains unclear whether this regulation on firearms dispossession is a permanent or temporary disability.In Tyler v. Hillsdale County Sheriff’s Department (Tyler III), Clifford Tyler brought an as-applied constitutional challenge against § 922(g)(4), alleging that the statute was unconstitutional because it prevented him from possessing a firearm even though he was no longer mentally ill and …


Nebline, June/July 2022 Jun 2022

Nebline, June/July 2022

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Tick Tips for Tick “Season”

Contribute to Data on Nebraska Statewide Tick Distribution

Tips for Staying Hydrated by Kayla Colgrove

Recipe of the Month: Orange Slushie by Kayla Colgrove

Miniature Gardens: A fun way to get your child interested in gardening by Sarah Browning

Garden Guide: Things to Do This Month

Managing Hard Water by Becky Scheurman

So You’ve Inherited a Farm, Now What?

Listen to CropWatch Podcast

Young Kids Learning in the Kitchen by Hayley Jackson

Free Beg Bug Programs

Next Chapter at Nebraska

Babysitting Training for 5th–10th Graders, June 9

Plant Science Online Contests

4-H Council Golf Tournament …


Paper Mills Research Report [English], Committee On Publication Ethics, Stm Jun 2022

Paper Mills Research Report [English], Committee On Publication Ethics, Stm

Copyright, Fair Use, Scholarly Communication, etc.

Executive summary

The subject of paper mills is currently being widely discussed by many stakeholders across the research publishing landscape. This report aims to give an overview of this topic, to explain how paper mills work, why they work and what we can collectively do about it. We have also undertaken a study of data submitted from a variety of investigations by leading publishers to get a sense of the scale of the problem. This paper concludes that the submission of suspected fake research papers, also often associated with fake authorship, is growing and threatens to overwhelm the editorial processes …


Data-Driven Prioritization And Empirical Predictions For Bridge Scour In Nebraska, Richard L. Wood, Awgku Ahmad Hashim B. Awg Bolhasan, Basil Abualshar, Christine E. Wittich, Chung R. Song, Junke Guo, Mohammad Ebrahim Mohammadi, Mitra Nasimi, Yijun Liao Jun 2022

Data-Driven Prioritization And Empirical Predictions For Bridge Scour In Nebraska, Richard L. Wood, Awgku Ahmad Hashim B. Awg Bolhasan, Basil Abualshar, Christine E. Wittich, Chung R. Song, Junke Guo, Mohammad Ebrahim Mohammadi, Mitra Nasimi, Yijun Liao

Nebraska Department of Transportation: Research Reports

The effect of scour at the bridge substructure results in an increase in the vulnerability of the overall bridge stability. Previous studies have found that current guidelines are often overly-conservative with respect to scour. This project aims to provide guidance on hydraulic modeling parameters and reasonable scour estimates specific to Nebraska conditions. This will enable engineers to assess bridge sites for scour more precisely for efficient and effective design and countermeasures. Four sites were surveyed for scour changes between the period of December 9, 2020, to April 20, 2021. At these four sites, overland and bathymetry survey data were collected. …


Water Quality, Carrier Volume And Droplet Size Effects On Herbicide Efficacy And Drift Potential, Barbara Houston Jun 2022

Water Quality, Carrier Volume And Droplet Size Effects On Herbicide Efficacy And Drift Potential, Barbara Houston

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Herbicide performance is directly related to the amount of active ingredient that has been deposited on the plant. Hence, spray solution characteristics and application parameters are crucial in determining the efficacy of an herbicide application. To maximize the effectiveness of chemical control, methods to deliver full chemical dose must be utilized: allowing the active ingredient to be readily absorbed once added to the carrier and mitigating off-target movement and low herbicide doses. Water is the most frequently used carrier in herbicide applications. Chemical parameters, such as water hardness and pH, can have a critical role in herbicide performance. It is …


The Nebraska Bird Review Volume 90 Number 2, June 2022 Jun 2022

The Nebraska Bird Review Volume 90 Number 2, June 2022

Nebraska Bird Review

Spring Field Report, March - May 2022, by W. Ross Silcock ….46

Rare Dark American Kestrel – Melanistic or Sooty?, by Joseph Gubanyi, Joel Rathe, Camden Sesna …. 71

Remembering Rosalind Morris …. 76

Remembering Lanny Randolph by William Flack … 77

NOU Spring field Days and Annual Meeting in Gering, May 20-22, 2022 ….78

Subscription and Organization Information …. 87


Speciation With Gene Flow In A Narrow Endemic West Virginia Cave Salamander (Gyrinophilus Subterraneus), Evan H. Campbell Grant, Kevin P. Mulder, Adrianne B. Brand, Douglas B. Chambers, Addison H. Wynn, Grace Capshaw, Matthew L. Niemiller, John G. Phillips, Jeremy F. Jacobs, Shawn R. Kuchta, Rayna C. Bell Jun 2022

Speciation With Gene Flow In A Narrow Endemic West Virginia Cave Salamander (Gyrinophilus Subterraneus), Evan H. Campbell Grant, Kevin P. Mulder, Adrianne B. Brand, Douglas B. Chambers, Addison H. Wynn, Grace Capshaw, Matthew L. Niemiller, John G. Phillips, Jeremy F. Jacobs, Shawn R. Kuchta, Rayna C. Bell

United States Geological Survey: Staff Publications

Due to their limited geographic distributions and specialized ecologies, cave species are often highly endemic and can be especially vulnerable to habitat degradation within and surrounding the cave systems they inhabit. We investigated the evolutionary history of the West Virginia Spring Salamander (Gyrinophilus subterraneus), estimated the population trend from historic and current survey data, and assessed the current potential for water quality threats to the cave habitat. Our genomic data (mtDNA sequence and ddRADseq-derived SNPs) reveal two, distinct evolutionary lineages within General Davis Cave corresponding to G. subterraneus and its widely distributed sister species, Gyrinophilus porphyriticus, that …


Single-Pass Inline Pipeline 3d Reconstruction Using Depth Camera Array, Zhexiong Shang, Zhigang Shen Jun 2022

Single-Pass Inline Pipeline 3d Reconstruction Using Depth Camera Array, Zhexiong Shang, Zhigang Shen

Department of Construction Engineering and Management: Faculty Publications

A novel inline inspection (ILI) approach using depth cameras array (DCA) is introduced to create high-fidelity, dense 3D pipeline models. A new camera calibration method is introduced to register the color and the depth information of the cameras into a unified pipe model. By incorporating the calibration outcomes into a robust camera motion estimation approach, dense and complete 3D pipe surface reconstruction is achieved by using only the inline image data collected by a self-powered ILI rover in a single pass through a straight pipeline. The outcomes of the laboratory experiments demonstrate one-millimeter geometrical accuracy and 0.1-pixel photometric accuracy. …


Monolithic Integration Of Hybrid Perovskite Single Crystals With Silicon For Highly Sensitive X - Ray Detectors, Jinsong Huang, Wei Wei May 2022

Monolithic Integration Of Hybrid Perovskite Single Crystals With Silicon For Highly Sensitive X - Ray Detectors, Jinsong Huang, Wei Wei

Department of Mechanical and Materials Engineering: Faculty Publications

Perovskite single crystal X - ray radiation detector devices including an X - ray wavelength - responsive active layer including an organolead trihalide perovskite single crystal, a substrate layer comprising an oxide, and a binding layer disposed between the active layer and the substrate layer. The binding layer including a binding molecule having a first functional group that bonds to the organolead trihalide perovskite single crystal and a second functional bonds with the oxide. Inclusion of the binding layer advantageously reduces device noise while retaining signal intensity.


High-Throughput Characterization, Correlation, And Mapping Of Leaf Photosynthetic And Functional Traits In The Soybean (Glycine Max) Nested Association Mapping Population, Christopher M. Montes, Carolyn Fox, Álvaro Sanz-Sáez, Shawn P. Serbin, Etsushi Kumagai, Matheus D. Krause, Alencar Xavier, James E. Specht, William D. Beavis, Carl J. Bernacchi, Brian W. Diers, Elizabeth A. Ainsworth May 2022

High-Throughput Characterization, Correlation, And Mapping Of Leaf Photosynthetic And Functional Traits In The Soybean (Glycine Max) Nested Association Mapping Population, Christopher M. Montes, Carolyn Fox, Álvaro Sanz-Sáez, Shawn P. Serbin, Etsushi Kumagai, Matheus D. Krause, Alencar Xavier, James E. Specht, William D. Beavis, Carl J. Bernacchi, Brian W. Diers, Elizabeth A. Ainsworth

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Photosynthesis is a key target to improve crop production in many species including soybean [Glycine max (L.) Merr.]. A challenge is that phenotyping photosynthetic traits by traditional approaches is slow and destructive. There is proof-of-concept for leaf hyperspectral reflectance as a rapid method to model photosynthetic traits. However, the crucial step of demonstrating that hyperspectral approaches can be used to advance understanding of the genetic architecture of photosynthetic traits is untested. To address this challenge, we used full-range (500-2,400 nm) leaf reflectance spectroscopy to build partial least squares regression models to estimate leaf traits, including the rate-limiting processes of photosynthesis, …


A High-Density Theta Burst Paradigm Enhances The Aftereffects Of Transcranial Magnetic Stimulation: Evidence From Focal Stimulation Of Rat Motor Cortex, Qinglei Meng, Hieu Nguyen, Antonia Vrana, Simone Baldwin, Charlotte Qiong Li, Antonia Giles, Jun Wang, Yihong Yang, Hanbing Lu May 2022

A High-Density Theta Burst Paradigm Enhances The Aftereffects Of Transcranial Magnetic Stimulation: Evidence From Focal Stimulation Of Rat Motor Cortex, Qinglei Meng, Hieu Nguyen, Antonia Vrana, Simone Baldwin, Charlotte Qiong Li, Antonia Giles, Jun Wang, Yihong Yang, Hanbing Lu

Department of Electrical and Computer Engineering: Faculty Publications

Background: Theta burst stimulation (TBS) is an efficient noninvasive neuromodulation paradigm that has been widely adopted, clinically. However, the efficacy of TBS treatment remains similarly modest as conventional 10 Hz repetitive transcranial magnetic stimulation (rTMS).

Objective/hypothesis: To develop a new TBS paradigm that enhances the effects of TMS administration while maintaining high time-efficiency.

Methods: We describe here a new TMS paradigm, named High-Density Theta Burst Stimulation (hdTBS). This paradigm delivers up to 6 pulses per burst, as opposed to only 3 in conventional TBS, while maintaining the inter-burst interval of 200 ms (or 5 Hz) - a …


Assessing The Effectiveness Of Problem-Based Learning Across Two Concrete Construction Courses, Anthony Torres, Jiong Hu, Vedaraman Sriraman, Araceli Martínez-Ortiz, Jorge Membrillo-Hernández May 2022

Assessing The Effectiveness Of Problem-Based Learning Across Two Concrete Construction Courses, Anthony Torres, Jiong Hu, Vedaraman Sriraman, Araceli Martínez-Ortiz, Jorge Membrillo-Hernández

Department of Civil and Environmental Engineering: Faculty Publications

The goal of this study is to assess the effectiveness of a Problem-Based Learning (PBL) pedagogy that was implemented in two different concrete construction courses. Both courses are a part of an industry focused four-year undergraduate concrete degree program. One of the classes focused on concrete problems, diagnosis, and repair of existing concrete, while the other class focused on handling and management methods of various concrete mixtures. In both courses, a PBL pedagogy was implemented such that students were self-learning and discovering the knowledge through an action-research case study. The action-research case study was specific to the course outcomes relevant …


Association Mapping Across A Multitude Of Traits Collected In Diverse Environments In Maize, Ravi V. Mural, Guangchao Sun, Marcin Grzybowski, Michael C. Tross, Hongyu Jin, Christine Smith, Linsey Newton, Carson M. Andorf, Margaret R. Woodhouse, Addie M. Thompson, Brandi Sigmon, James C. Schnable May 2022

Association Mapping Across A Multitude Of Traits Collected In Diverse Environments In Maize, Ravi V. Mural, Guangchao Sun, Marcin Grzybowski, Michael C. Tross, Hongyu Jin, Christine Smith, Linsey Newton, Carson M. Andorf, Margaret R. Woodhouse, Addie M. Thompson, Brandi Sigmon, James C. Schnable

Center for Plant Science Innovation: Faculty Publications

Classical genetic studies have identified many cases of pleiotropy where mutations in individual genes alter many different phenotypes. Quantitative genetic studies of natural genetic variants frequently examine one or a few traits, limiting their potential to identify pleiotropic effects of natural genetic variants. Widely adopted community association panels have been employed by plant genetics communities to study the genetic basis of naturally occurring phenotypic variation in a wide range of traits. High-density genetic marker data—18M markers—from 2 partially overlapping maize association panels comprising 1,014 unique genotypes grown in field trials across at least 7 US states and scored for 162 …