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Bola3 And Nfu1 Link Mitoribosome Iron-Sulfur Cluster Assembly To Multiple Mitochondrial Dysfunctions Syndrome, Hui Zhong, Alexandre Janer, Oleh Khalimonchuk, Hana Antonicka, Eric Shoubridge, Antoni Barrientos

Department of Biochemistry: Faculty Publications

The human mitochondrial ribosome contains three [2Fe-2S] clusters whose assembly pathway, role, and implications for mitochondrial and metabolic diseases are unknown. Here, structure-function correlation studies show that the clusters play a structural role during mitoribosome assembly. To uncover the assembly pathway, we have examined the effect of silencing the expression of Fe-S cluster biosynthetic and delivery factors on mitoribosome stability. We find that the mitoribosome receives its [2Fe-2S] clusters from the GLRX5-BOLA3 node. Additionally, the assembly of the small subunit depends on the mitoribosome biogenesis factor METTL17, recently reported containing a [4Fe-4S] cluster, which we propose is inserted via the …

Global Projections Of Flash Drought Show Increased Risk In A Warming Climate, Jordan I. Christian, Elinor R. Martin, Jeffrey B. Basara, Jason C. Furtado, Jason A. Otkin, Lauren E. L. Lowman, Eric D. Hunt, Vimal Mishra, Xiangming Xiao

School of Natural Resources: Faculty Publications

Flash drought, characterized by unusually rapid drying, can have substantial impact on many socioeconomic sectors, particularly agriculture. However, potential changes to flash drought risk in a warming climate remain unknown. In this study, projected changes in flash drought frequency and cropland risk from flash drought are quantified using global climate model simulations. We find that flash drought occurrence is expected to increase globally among all scenarios, with the sharpest increases seen in scenarios with higher radiative forcing and greater fossil fuel usage. Flash drought risk over cropland is expected to increase globally, with the largest increases projected across North America …

Corrigendum To “Testing Pyroxenite Versus Peridotite Sources For Marine Basalts Using U-Series Isotopes” [Lithos 332–333 (2019) 226–244], Lynne J. Elkins, Bernard Bourdon, Sarah Lambart

Department of Earth and Atmospheric Sciences: Faculty Publications

The authors regret that a small error in the dynamic melting Matlab script used for this paper produced erroneous results for some of the included modeling outcomes. We have written an updated modeling program in python, which can be accessed in the ENKI and pyUserCalc public data repository (https://gitlab.com/ENKI-portal/pyUsercalc/). Although the corrected results shown in revised versions of Figs. S3, S4, S8, S9, and S10 now appear quite different from the original publication, however, we find that when restricted to plausible scenarios of interest, our conclusions overall have not significantly changed. Some details of our results and discussion require corrections, …

Comparison Of Library Publishing Workflows By Open Access Model, Sue Ann Gardner

University of Nebraska-Lincoln Libraries: Presentations

Slides of an invited talk presented remotely at the Challenges of Contemporary Publishing Conference held at the Lublin University of Technology in Lublin, Poland on May 25, 2023.

Includes a comparison of workflows involved in library publishing based on open access (OA) model (gold, green, and diamond/platinum). Gold OA refers to outsourcing the publishing, green OA refers to republishing, and diamond/platinum OA refers to original publishing.

Toward Automated Irrigation Management With Integrated Crop Water Stress Index And Spatial Soil Water Balance, Sandeep Bhatti, Derek M. Heeren, Susan A. O’Shaughnessy, Christopher M. U. Neale, Jacob Larue, Steve Melvin, Eric Wilkening, Geng Bai

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Decision support systems intended for precision irrigation aim at reducing irrigation applications while optimizing crop yield to achieve maximum crop water productivity (CWP). These systems incorporate on-site sensor data, remote sensing inputs, and advanced algorithms with spatial and temporal characteristics to compute precise crop water needs. The availability of variable rate irrigation (VRI) systems enables irrigation applications at a sub-field scale. The combination of an appropriate VRI system along with a precise decision support system would be ideal for improved CWP. The objective of this study was to compare and evaluate two decision support systems in terms of seasonal applied …

Toward Automated Irrigation Management With Integrated Crop Water Stress Index And Spatial Soil Water Balance, Sandeep Bhatti, Derek M. Heeren, Susan A. O’Shaughnessy, Christopher M. U. Neale, Jacob Larue, Steve Melvin, Eric Wilkening, Geng Bai

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Decision support systems intended for precision irrigation aim at reducing irrigation applications while optimizing crop yield to achieve maximum crop water productivity (CWP). These systems incorporate on-site sensor data, remote sensing inputs, and advanced algorithms with spatial and temporal characteristics to compute precise crop water needs. The availability of variable rate irrigation (VRI) systems enables irrigation applications at a sub-field scale. The combination of an appropriate VRI system along with a precise decision support system would be ideal for improved CWP. The objective of this study was to compare and evaluate two decision support systems in terms of seasonal applied …

Impact Of Cattle Grazing Corn Residue In Spring On Soil And Subsequent Soybean Yield, Morgan T. Grabau, J. C. Macdonald, Zach E. Carlson, M. E. Drewnoski

Department of Animal Science: Faculty Publications

The effects of spring corn (Zea mays) residue grazing and stocking density on soil physical properties and subsequent soybean (Glycine max) yield were evaluated in an experiment with three treatments: no grazing (NG), normal stocking density (NSD), and high stocking density (HSD). The study was conducted over 2 years with four replicates per treatment each year. Steers (277 ± 4.4 kg) were stocked at 7.5 steers/ha for NSD with a target grazing of 45 days starting in mid- February, and 22.5 steers/ha for HSD with a target grazing of 15 days in mid-March, such that the …

Emotional Responses To Covid-19 Stressors Increase Information Avoidance About An Important Unrelated Health Threat, Christopher Gustafson, Kate Brooks, Syed Imran Ali Meerza, Amalia Yiannaka

Department of Agricultural Economics: Faculty Publications

The COVID-19 pandemic, like other crises, has had direct and indirect impacts on individuals, many of which have been negative. While a large body of research has examined the impacts of COVID-19 on people’s lives, there is little evidence about how COVID-19 affects decision-making broadly. Emotional responses to COVID-19-related stressors, such as illness and income loss, provide a pathway for these stressors to affect decision-making. In this study, we examine linkages between exposure to COVID-19-related stressors—focusing on temporally specific local case counts and loss of income due to the pandemic—and decisions to access information about antimicrobial resistance (AMR), another critically …

Néel Spin Currents In Antiferromagnets, Ding-Fu Shao, Yuan-Yuan Jiang, Jun Ding, Shu-Hui Zhang, Zi-An Wang, Rui-Chun Xiao, Gautam Gurung, W. J. Lu, Y. P. Sun, Evgeny Y. Tsymbal

Department of Physics and Astronomy: Faculty Publications

Ferromagnets are known to support spin-polarized currents that control various spin-dependent transport phenomena useful for spintronics. On the contrary, fully compensated antiferromagnets are expected to support only globally spin-neutral currents. Here, we demonstrate that these globally spin-neutral currents can represent the Néel spin currents, i.e., staggered spin currents flowing through different magnetic sublattices. The Néel spin currents emerge in antiferromagnets with strong intrasublattice coupling (hopping) and drive the spin-dependent transport phenomena such as tunneling magnetoresistance (TMR) and spin-transfer torque (STT) in antiferromagnetic tunnel junctions (AFMTJs). Using RuO₂ and Fe₄GeTe₂ as representative antiferromagnets, we predict that the …

Preservice Elementary Teachers Conceptions And Self-Efficacy For Integrated Stem, Deepika Menon, Deef A. A. Shorman, Derek Cox, Amanda Thomas

Department of Teaching, Learning, and Teacher Education: Faculty Publications

Educational reform efforts have emphasized preparing highly competent and confident preservice teachers to deliver effective K-12 Science, Technology, Engineering, and Mathematics (STEM) instruction. Self-efficacy is a key variable that influences motivation and performance, and therefore it is necessary to support the development of preservice teachers’ integrated STEM teaching self-efficacy. This mixed-methods study investigates how preservice elementary teachers’ integrated STEM teaching self-efficacy is shaped during their participation in a newly redesigned STEM semester consisting of three concurrent methods courses (science and engineering, mathematics, and technology methods courses). The quantitative data sources included the Self-efficacy for Teaching Integrated STEM instrument administered as …

A Novel Graph Neural Network-Based Framework For Automatic Modulation Classification In Mobile Environments, Pejman Ghasemzadeh

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

Automatic modulation classification (AMC) refers to a signal processing procedure through which the modulation type and order of an observed signal are identified without any prior information about the communications setup. AMC has been recognized as one of the essential measures in various communications research fields such as intelligent modem design, spectrum sensing and management, and threat detection. The research literature in AMC is limited to accounting only for the noise that affects the received signal, which makes their models applicable for stationary environments. However, a more practical and real-world application of AMC can be found in mobile environments where …

Rehybridization Dynamics Into The Pericyclic Minimum Of An Electrocyclic Reaction Imaged In Real-Time, Y. Liu, D. M. Sanchez, M. R. Ware, E. G. Champenois, J. Yang, J. P. F. Nunes, A. Attar, Martin Centurion, J. P. Cryan, R. Forbes, K. Hegazy, M. C. Hoffmann, F. Ji, M.-F. Lin, D. Luo, S. K. Saha, X. Shen, X. J. Wang, T. J. Martínez, T. J. A. Wolf

Department of Physics and Astronomy: Faculty Publications

Electrocyclic reactions are characterized by the concerted formation and cleavage of both σ and π bonds through a cyclic structure. This structure is known as a pericyclic transition state for thermal reactions and a pericyclic minimum in the excited state for photochemical reactions. However, the structure of the pericyclic geometry has yet to be observed experimentally.We use a combination of ultrafast electron diffraction and excited state wavepacket simulations to image structural dynamics through the pericyclic minimum of a photochemical electrocyclic ring-opening reaction in the molecule α-terpinene. The structural motion into the pericyclic minimum is dominated by rehybridization of two carbon …

A Taxonomic List Of The Old World Genera In The Subfamily Hesperiinae (Hesperiidae) Arranged Into Tribes, Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

A taxonomic list of valid genera in the subfamily Hesperiinae from the Old World assigned to tribes is provided. This list is based on phylogenetic analysis of genomic sequence data complemented by morphological considerations. As a result, there are no incertae sedis non-fossil genera in the family Hesperiidae.

A Standard Protocol To Report Discrete Stage-Structured Demographic Information, Samuel J. L. Gascoigne, Simon Rolph, Daisy Sankey, Nagalakshmi Nidadavolu, Adrian S. Stell Pičman, Christina M. Hernández, Matthew E. R. Philpott, Aiyla Salam, Connor Bernard, Erola Fenollosa, Young Jun Lee, Jessica Mclean, Shathuki Hetti Achchige Perera, Oliver G. Spacey, Maja Kajin, Anna C. Vinton, C. Ruth Archer, Jean H. Burns, Danielle L. Buss, Hal Caswell, Judy P. Che-Castaldo, Dylan Z. Childs, Pol Capdevila, Aldo Compagnoni, Elizabeth Crone, Thomas H. G. Ezard, Dave Hodgson, Tiffany M. Knight, Owen R. Jones, Eelke Jongejans, Jenni Mcdonald, Brigitte Tenhumberg, Chelsea C. Thomas, Andrew J. Tyre, Satu Ramula, Iain Stott, Raymond L. Tremblay, Phil Wilson, James James Vaupel, Roberto Salguero-Gómez

School of Biological Sciences: Faculty Publications

1. Stage-based demographic methods, such as matrix population models (MPMs), are powerful tools used to address a broad range of fundamental questions in ecology, evolutionary biology and conservation science. Accordingly, MPMs now exist for over 3000 species worldwide. These data are being digitised as an ongoing process and periodically released into two large open-access online repositories: the COMPADRE Plant Matrix Database and the COMADRE Animal Matrix Database. During the last decade, data archiving and curation of COMPADRE and COMADRE, and subsequent comparative research, have revealed pronounced variation in how MPMs are parameterized and reported.

2. Here, we summarise current issues related to …

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Transgender And Gender Diverse Clients’ Experiences In Therapy: Responses To Sociopolitical Events And Helpful And Unhelpful Experiences, Jae A. Puckett, Devon Kimball, W. Kalei Glozier, Megan Wertz, Terra Dunn, Brenna R. Lash, Allura L. Ralston, Natalie R. Holt, T. Zachary Huit, Sage Volk, Debra A. Hope, Richard Mocarski, L. Zachary Dubois

Department of Psychology: Faculty Publications

We examined transgender and gender-diverse (TGD) people’s reports of their therapy experiences over the course of a year. We explored how participants’ therapists integrated discussions about current events, as well as their more general perspectives on helpful and unhelpful experiences. A total of 107 participants provided data on these questions at least once over 12 months of surveys (M age = 33.79; 70.1% White), reflecting on their current therapy experiences. Through thematic analysis of qualitative data, the following themes were constructed regarding discussing sociopolitical events: (a) facilitating coping via bearing witness to clients’ internal experiences and implementing other therapeutic …

Nature Nurturers Sustainability And Journalism Club, Bruce Baker, Shelby Rickert

Honors Program: Expanded Learning Clubs

Afterschool club that teaches basic sustainability and journalism knowledge to kids in a fun, hands-on, and engaging way. Kids will learn over the course of several weeks and then make posters about their environmental interests.

Cms Pythia 8 Colour Reconnection Tunes Based On Underlying-Event Data, A. Tumasyan

Department of Physics and Astronomy: Faculty Publications

New sets of parameter tunes for two of the colour reconnection models, quantum chromodynamics-inspired and gluon-move, implemented in the pythia 8 event generator, are obtained based on the default CMS pythia 8 underlying-event tune, CP5. Measurements sensitive to the underlying event performed by the CMS experiment at centre-of-mass energies √ s = 7 and 13 TeV, and by the CDF experiment at 1.96 TeV are used to constrain the parameters of colour reconnection models and multiple-parton interactions simultaneously. The new colour reconnection tunes are compared with various measurements at 1.96, 7, 8, and 13 TeV including measurements of the underlying-event, …

High-Throughput Phenotyping Of Plant Leaf Morphological, Physiological, And Biochemical Traits On Multiple Scales Using Optical Sensing, Huichun Zhang, Lu Wang, Xiuliang Jin, Liming Bian, Yufeng Ge

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Acquisition of plant phenotypic information facilitates plant breeding, sheds light on gene action, and can be applied to optimize the quality of agricultural and forestry products. Because leaves often show the fastest responses to external environmental stimuli, leaf phenotypic traits are indicators of plant growth, health, and stress levels. Combination of new imaging sensors, image processing, and data analytics permits measurement over the full life span of plants at high temporal resolution and at several organizational levels from organs to individual plants to field populations of plants. We review the optical sensors and associated data analytics used for measuring morphological, …

Modern Practices For Responsive Web Design And Web Accessibility, Keyaun Washington

Honors Program: Senior Projects (Public)

Responsive web design and web accessibility play crucial roles in ensuring an optimal user experience on the web. By designing websites with responsiveness and accessibility in mind, more opportunities are opened up for a wider audience to access and interact with our content. Through modern practices, responsive web design allows websites to reach several different devices ranging from compact smartwatches to expansive television screens. Designing for accessibility provides accommodations for individuals with impairments while also providing benefits for individuals without impairments. However, designing for responsiveness and accessibility can present challenges; a poor attempt at providing accessibility features can worsen a …

Stump Grinder Project, Wyatt Hopper

Honors Program: Senior Projects (Public)

This project covers the analysis of a Portable Stump Grinder device sponsored by private investors known as Gary and Carol Sherman, two farmers out of Lincoln, Nebraska. The ultimate goal of this project, in terms of the work we were assigned, was to provide the foundation work for future engineering teams to design and build the stump grinder for Gary and Carol Sherman.

Disrupting Routine: The Expansion Of Precedent, Olena Yarmolyuk, Olena Yarmolyuk

Masters in Architecture Program: Theses

Iconic architecture has presented a preferential nature to the establishment of architectural work. Academically, only the architectural a-side is presented to students. It is used as a means to develop, measure, and identify good work. Meanwhile, the architectural B-side is deliberately hidden away and censored by the profession. It exploits the perverse - displaying all of architecture’s failures, glitches, and anomalies.1 However, the notion of the a and b sides also presents problematic consequences. Prescribing architecture as either a or b side is problematic - it creates a divide between iconic architecture and all the other works deemed ‘insignificant’. Even …

Tectonics Of Reuse: A Material Exploration Of Deconstruction And Reconstruction In Architecture, Scott Lafferty

Masters in Architecture Program: Theses

This thesis explores the tectonics and poetics of reusing deconstructed building components. To challenge the current unitized method of deconstruction, a series of machines were designed to extract large-scale building chunks. These chunks were then reassembled using a range of details and connections that celebrate material textures and cultural memories of each architectural fragment. By developing methods and strategies for material reuse, the thesis demonstrates the potential for design to address the environmental impacts of the building industry and the architectural representation of cultural memory through tectonics.

Advisor: Zachary Tate Porter

Leadership And Project Management In Engineering: Baja Tube Bender, Maysyn Tm Sorensen

Honors Program: Senior Projects (Public)

Typical coursework for Undergraduate Mechanical Engineering students does not deeply focus on project management and leadership. Detailed in the following documentation is review of my Mechanical Engineering Senior Design capstone project as well as analysis of final presentations of other capstone projects. The Senior Design capstone projects spanned both semesters of the ‘22-’23 academic school year. After the first semester of my project I produced a post-mortem report to analyze the project’s progress and suggest improvements for the project, design, and team interaction. These improvements were compiled into an action plan and implemented in the spring semester. When the project …

Design Of University Small-Scale Dairy Processing Facility, Philip J. Hildebrand, Joshua Arejola, Alicia Andersen, Terry Howell Jr, Tami M. Brown-Brandl

Department of Agricultural and Biological Systems Engineering: Faculty Publications

This project was assigned to research the feasibility and value of implementing a dairy processing facility on the campus of the University of Nebraska-Lincoln. The facility would process milk produced from cows under the same roof and will serve as an educational experience for Nebraska dairy farmers, UNL students, and K-12 students in the Lincoln-Lancaster County area. If the project is successful and replicated across the state, this facility could have a significant impact on the reduction of milk transportation costs in the Nebraska dairy industry.

The project began with researching milk processing methods and steps from production to consumption. …

Home-Site Advantage For Host Species–Specific Gut Microbiota, Daniel D. Sprockett, Jeff Price, Anthony Juritsch, Robert J. Schmaltz, Madalena V. F. Real, Samantha L. Goldman, Michael Sheehan, Amanda E. Ramer-Tait, Andrew H. Moeller

Department of Nutrition and Health Sciences: Faculty Publications

Mammalian species harbor compositionally distinct gut microbial communities, but the mechanisms that maintain specificity of symbionts to host species remain unclear. Here, we show that natural selection within house mice (Mus musculus domesticus) drives deterministic assembly of the house-mouse gut microbiota from mixtures of native and non-native microbiotas. Competing microbiotas from wild-derived lines of house mice and other mouse species (Mus and Peromyscus spp.) within germ-free wild-type (WT) and Rag1-knockout (Rag1^−/−) house mice revealed widespread fitness advantages for native gut bacteria. Native bacterial lineages significantly outcompeted non-native lineages in both WT and Rag1 …

Long-Term Conservation And Conventional Tillage Systems Impact Physical And Biochemical Soil Health Indicators In A Corn–Soybean Rotation, Anuoluwa O. Sangotayo, Jemila Chellappa, Udayakumar Sekaran, Sangeeta Bansal, Padma Angmo, Paul J. Jasa, Sandeep Kumar, Javed Iqbal

Department of Agronomy and Horticulture: Faculty Publications

Agricultural management practices tend to influence soil structure stabilization, mediating many physical, chemical, and biological processes in soils. Therefore, understanding the long-term effects of management practices on various soil health indicators is crucial to develop sustainable agricultural practices. This study aimed to assess the long-term conventional and conservation tillage effects on soil physical (aggregates) and biochemical (soil organic carbon [SOC], enzymes, and microbial biomass) parameters under a range of tillage practices in a corn–soybean rotation in Nebraska. The experiment was conducted at two locations as follows: (1) Concord site (36 years) with the three treatments: no-till (NT), disk, and moldboard …

A Generalization Of The Chomsky-Halle Phonetic Representation Using Real Numbers For Robust Speech Recognition In Noisy Environments, Peter Z. Revesz

School of Computing: Faculty Publications

Speech recognition is difficult when the speech signal is weak or occurs in a noisy environment. This paper presents an efficient and robust method that can reconstruct the standard pronunciation of English phonemes and words given a weak or noisy signal. The reconstruction is based on a novel representation of the reconstruction task as a problem of data retrieval from a database in two different cases: (1) when the phonemes are represented in the database as binary tuples and the input is also a binary tuple from which deletion errors occur, and (2) when the phonemes are represented in the …

Near-Term Effects Of Perennial Grasses On Soil Carbon And Nitrogen In Eastern Nebraska, Salvador Ramirez Ii, Marty R. Schmer, Virginia L. Jin, Robert B. Mitchell, Kent M. Eskridge

Department of Statistics: Faculty Publications

Incorporating native perennial grasses adjacent to annual row crop systems managed on marginal lands can increase system resiliency by diversifying food and energy production. This study evaluated (1) soil organic C (SOC) and total N stocks (TN) under warm-season grass (WSG) monocultures and a low diversity mixture compared to an adjacent no-till continuous-corn system, and (2) WSG total above-ground biomass (AGB) in response to two levels of N fertilization from 2012 to 2017 in eastern Nebraska, USA. The WSG treatments consisted of (1) switchgrass (SWG), (2) big bluestem (BGB), and (3) low-diversity grass mixture (LDM; big bluestem, Indiangrass, and sideoat …

Improving The Cotton Simulation Model, Gossym, For Soil, Photosynthesis, And Transpiration Processes, Sahila Beegum, Dennis Timlin, Kambham Raja Reddy, Vangimalla Reddy, Wenguang Sun, Zhuangji Wang, David Fleisher, Chittaranjan Ray

Nebraska Water Center: Faculty Publications

GOSSYM, a mechanistic, process-level cotton crop simulation model, has a two-dimensional (2D) gridded soil model called Rhizos that simulates the below-ground processes daily. Water movement is based on gradients of water content and not hydraulic heads. In GOSSYM, photosynthesis is calculated using a daily empirical light response function that requires calibration for response to elevated carbon dioxide ( CO₂). This report discusses improvements made to the GOSSYM model for soil, photosynthesis, and transpiration processes. GOSSYM’s predictions of below-ground processes using Rhizos are improved by replacing it with 2DSOIL, a mechanistic 2D finite element soil process model. The photosynthesis …

The Impacts Of Local Property Taxes On Nebraska's State Legislator Elections And State Legislator Voting, Taylor Gold

Department of Political Science: Dissertations, Theses, and Student Research

Throughout Nebraska’s history, concerns about the state’s property tax policy are one of, if not the most, discussed policy issues. Despite Nebraska’s emphasis on local fiscal control, state-level policy reforms shape the state’s property tax landscape. This seemingly contradictory emphasis on providing a state-level solution to a local policy problem leads this study to ask whether state legislative officials are held electorally accountable for legislative actions on local property tax and whether they are directly held accountable for changes in local property taxes. This study investigates this potential relationship through novel data collection on Nebraska’s state legislator elections, legislative actions, …