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Comparative Analysis Of Gingival Tissue Antigen Presentation Pathways In Ageing And Periodontitis, Octavio A. Gonzalez, Michael John Novak, Sreenatha S. Kirakodu, Luis Orraca, Kuey-Chu Chen, Arnold J. Stromberg, Janis Gonzalez-Martinez, Jeffrey L. Ebersole

Center for Oral Health Research Faculty Publications

AIM: Gingival tissues of periodontitis lesions contribute to local elevations in mediators, including both specific T cell and antibody immune responses to oral bacterial antigens. Thus, antigen processing and presentation activities must exist in these tissues to link antigen-presenting cells with adaptive immunity. We hypothesized that alterations in the transcriptome of antigen processing and presentation genes occur in ageing gingival tissues and that periodontitis enhances these differences reflecting tissues less capable of immune resistance to oral pathogens.

MATERIALS AND METHODS: Rhesus monkeys (n = 34) from 3 to 23 years of age were examined. A buccal gingival sample from healthy …

Big Data, Social Physics, And Spatial Analysis: The Early Years, Trevor J. Barnes, Matthew W. Wilson

Geography Faculty Publications

This paper examines one of the historical antecedents of Big Data, the social physics movement. Its origins are in the scientific revolution of the 17th century in Western Europe. But it is not named as such until the middle of the 19th century, and not formally institutionalized until another hundred years later when it is associated with work by George Zipf and John Stewart. Social physics is marked by the belief that large-scale statistical measurement of social variables reveals underlying relational patterns that can be explained by theories and laws found in natural science, and physics in particular. This larger …

Soybean Nutrient Management In Kentucky, Edwin L. Ritchey, Chad Lee, Carrie Ann Knott, John H. Grove

Agriculture and Natural Resources Publications

Soybean grows best on fertile soils. For decades, the University of Kentucky has conducted field studies to establish the relationship between soil nutrient supplies and soybean yield. Adequate soil fertility must be present so that yields are not limited. Soybean removes a large amount of nutrients in the seed relative to other annual crops. For each bushel of soybean produced, 3 lb N, 0.7 lb P₂O₅, and 1.1 lb K₂O will be removed in the seed, but considerably more is required to supply the leaves, stems and pods that are not removed during harvest …

Characterization Of In Vitro Transcriptional Responses Of Dorsal Root Ganglia Cultured In The Presence And Absence Of Blastema Cells From Regenerating Salamander Limbs, Antony Athippozhy, Jeffrey Lehrberg, James R. Monaghan, David M. Gardiner, S. Randal Voss

Biology Faculty Publications

During salamander limb regeneration, nerves provide signals that induce the formation of a mass of proliferative cells called the blastema. To better understand these signals, we developed a blastema-dorsal root ganglia (DRG) co-culture model system to test the hypothesis that nerves differentially express genes in response to cues provided by the blastema. DRG with proximal and distal nerve trunks were isolated from axolotls (Ambystoma mexicanum), cultured for five days, and subjected to microarray analysis. Relative to freshly isolated DRG, 1,541 Affymetrix probe sets were identified as differentially expressed and many of the predicted genes are known to function …

Induced Transcriptional Profiling Of Phenylpropanoid Pathway Genes Increased Flavonoid And Lignin Content In Arabidopsis Leaves In Response To Microbial Products, Mohammad Babar Ali, David H. Mcnear

Plant and Soil Sciences Faculty Publications

BACKGROUND: The production and use of biologically derived soil additives is one of the fastest growing sectors of the fertilizer industry. These products have been shown to improve crop yields while at the same time reducing fertilizer inputs to and nutrient loss from cropland. The mechanisms driving the changes in primary productivity and soil processes are poorly understood and little is known about changes in secondary productivity associated with the use of microbial products. Here we investigate secondary metabolic responses to a biologically derived soil additive by monitoring changes in the phenlypropanoid (PP) pathway in Arabidopsis thaliana.

RESULTS: This study …

Sudemycin E Influences Alternative Splicing And Changes Chromatin Modifications, Paolo Convertini, Manli Shen, Philip M. Potter, Gustavo Palacios, Chandraiah Lagisetti, Pierre De La Grange, Craig Horbinski, Yvonne N. Fondufe-Mittendorf, Thomas R. Webb, Stefan Stamm

Molecular and Cellular Biochemistry Faculty Publications

Sudemycin E is an analog of the pre-messenger RNA splicing modulator FR901464 and its derivative spliceostatin A. Sudemycin E causes the death of cancer cells through an unknown mechanism. We found that similar to spliceostatin A, sudemycin E binds to the U2 small nuclear ribonucleoprotein (snRNP) component SF3B1. Native chromatin immunoprecipitations showed that U2 snRNPs physically interact with nucleosomes. Sudemycin E induces a dissociation of the U2 snRNPs and decreases their interaction with nucleosomes. To determine the effect on gene expression, we performed genome-wide array analysis. Sudemycin E first causes a rapid change in alternative pre-messenger RNA splicing, which is …

Vision And Change Through The Genome Consortium For Active Teaching Using Next-Generation Sequencing (Gcat-Seek), Vincent Buonaccorsi, Mark Peterson, Gina Lamendella, Jeff Newman, Nancy Trun, Tammy Tobin, Andres Aguilar, Arthur G. Hunt, Craig Praul, Deborah Grove, Jim Roney, Wade Roberts

Plant and Soil Sciences Faculty Publications

No abstract provided.

Co2 Recycling Using Microalgae For The Production Of Fuels, Michael H. Wilson, John Groppo, Andrew Placido, S. Graham, S. A. Morton Iii, Eduardo Santillan-Jimenez, Aubrey Shea, Mark Crocker, Czarena Crofcheck, Rodney Andrews

Center for Applied Energy Research Faculty and Staff Publications

CO₂ capture and recycle using microalgae was demonstrated at a coal-fired power plant (Duke Energy’s East Bend Station, Kentucky). Using an in-house designed closed loop, vertical tube photobioreactor, Scenedesmus acutus was cultured using flue gas as the CO₂ source. Algae productivity of 39 g/(m² day) in June–July was achieved at significant scale (18,000 L), while average daily productivity slightly in excess of 10 g/(m² day) was demonstrated in the month of December. A protocol for low-cost algae harvesting and dewatering was developed, and the conversion of algal lipids—extracted from the harvested biomass—to diesel-range hydrocarbons via catalytic …

Redox-Mediated And Ionizing-Radiation-Induced Inflammatory Mediators In Prostate Cancer Development And Treatment, Lu Miao, Aaron K. Holley, Yanming Zhao, William H. St. Clair, Daret K. St. Clair

Toxicology and Cancer Biology Faculty Publications

SIGNIFICANCE: Radiation therapy is widely used for treatment of prostate cancer. Radiation can directly damage biologically important molecules; however, most effects of radiation-mediated cell killing are derived from the generated free radicals that alter cellular redox status. Multiple proinflammatory mediators can also influence redox status in irradiated cells and the surrounding microenvironment, thereby affecting prostate cancer progression and radiotherapy efficiency.

RECENT ADVANCES: Ionizing radiation (IR)-generated oxidative stress can regulate and be regulated by the production of proinflammatory mediators. Depending on the type and stage of the prostate cancer cells, these proinflammatory mediators may lead to different biological consequences ranging from …

Stilbene Analogs And Methods Of Treating Cancer, David Watt, Chunming Liu, Vitaliy M. Sviripa, Wen Zhang

Molecular and Cellular Biochemistry Faculty Patents

Stilbene analogs and pharmaceutical compositions that are useful for the treatment of various cancers, including without limitation, colorectal cancer (CRC) and breast cancer are disclosed.

For the complete abstract, please download this patent.

Characterization Of Glomerella Strains Recovered From Anthracnose Lesions On Common Bean Plants In Brazil, Quélen L. Barcelos, Joyce M.A. Pinto, Lisa J. Vaillancourt, Elaine A. Souza

Plant Pathology Faculty Publications

Anthracnose caused by Colletotrichum lindemuthianum is an important disease of common bean, resulting in major economic losses worldwide. Genetic diversity of the C. lindemuthianum population contributes to its ability to adapt rapidly to new sources of host resistance. The origin of this diversity is unknown, but sexual recombination, via the Glomerella teleomorph, is one possibility. This study tested the hypothesis that Glomerella strains that are frequently recovered from bean anthracnose lesions represent the teleomorph of C. lindemuthianum. A large collection of Glomerella isolates could be separated into two groups based on phylogenetic analysis, morphology, and pathogenicity to beans. Both …

Genetics Of Picalm Expression And Alzheimer's Disease, Ishita Parikh, David W. Fardo, Steven Estus

Sanders-Brown Center on Aging Faculty Publications

Novel Alzheimer's disease (AD) risk factors have been identified by genome-wide association studies. Elucidating the mechanism underlying these factors is critical to the validation process and, by identifying rate-limiting steps in AD risk, may yield novel therapeutic targets. Here, we evaluated the association between the AD-associated polymorphism rs3851179 near PICALM, which encodes a clathrin-coated pit accessory protein. Immunostaining established that PICALM is expressed predominately in microvessels in human brain. Consistent with this finding, PICALM mRNA expression correlated with expression of the endothelial genes vWF and CD31. Additionally, we found that PICALM expression was modestly increased with the rs3851179A …

Poster Session, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

1. Grading a Watershed? Patrick Creager, Eastern Kentucky University, Richmond, KY
2. Permeability Heterogeneity and Its Effects on Hyporheic Zone Exchange, Timothy Pryshlak and Audrey Sawyer, Department of Earth and Environmental Sciences, University of Kentucky, Lexington, KY
3. Effects of Atrazine on the Chemical Alarm Cue Response in Longear Sunfish (Lepomis megalottis), Ben M. Adams and Ben F. Brammell, Natural Sciences Department, Asbury University, Wilmore, KY
4. New Features Available on the Kentucky Groundwater Data Repository, Bart Davidson and others, Kentucky Geological Survey, University of Kentucky, Lexington, KY
5. Removal of Persistent Organic Pollutants from Contaminated Water Sources Utilizing Polyphenol- Functionalized Magnetic …

Session 2c, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• Results of the Statewide Groundwater Pathogen Study, Susan L. Mallette, Kentucky Division of Water, Frankfort, KY
• Changes in Nutrients and E. coli During Two Storm Events in Hinkston Creek, KY, Tiffany Hunter and Brian Reeder, Institute for Regional Analysis and Public Policy, Morehead State University, Morehead, KY
• Engaging Partners in the Cane Run Watershed, Carol Hanley and others, College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY
• The University of Kentucky Environmental Research and Training Lab is Available for Your Use, Tricia Coakley, Environmental Research Training Lab, University of Kentucky, Lexington, KY

Session 1c, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• Curry's Fork Watershed Plan: Data Pondering, Engaging Expert Advice, Cleaner Water Plans, Carolyn Cromer and others, Oldham County Fiscal Court, LaGrange, KY
• Overall Stream Function, Hydraulically and Ecologically (Opportunity Meets Necessity), Wanda Lawson and Oakes Routt, Stantec Consulting Services Inc., Louisville, KY
• Improving Urban Stream Water Quality through Stream Restoration at Montessori Middle School of Kentucky (MMSK), Pre-Restoration Water Quality and Bank Erosion Monitoring, Eric Dawalt and Arthur Parola, EcoGro/Ridgewater and the Stream Institute at the University of Louisville
• Improving Urban Stream Water Quality through Stream Restoration at Montessori Middle School of Kentucky (MMSK), Design and Construction …

Session 1a, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• Water Quality Studies in the Kentucky Coalfields: The Trend Station Program, Richard J. Wahrer, Kentucky Department for Natural Resources, Frankfort, KY
• Water Quality Studies in the Kentucky Coalfields: A Closer Look at Pigeonroost Fork, Martin County, KY, Richard J. Wahrer, Kentucky Department for Natural Resources, Frankfort, KY
• Water Quality Monitoring of the McConnell Springs Stormwater Quality Wetland Pond and Gainesway Pond Retrofit Project, 2010-2013, David Price and Susan Pluegar, Lexington-Fayette County Government, Division of Water Quality, Lexington, KY
• Water Quality Monitoring of McConnell Springs, Lexington, KY, David Price, Lexington-Fayette County Government, Division of Water Quality, Lexington, …

Proceedings Of 2014 Kentucky Water Resources Annual Symposium, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

This symposium was planned and conducted as a part of the state water resources research institute annual program that is supported by Grant/Cooperative Agreement Number G11AP20081 from the United States Geological Survey. The contents of this proceedings document and the views and conclusions presented at the symposium are solely the responsibility of the individual authors and presenters and do not necessarily represent the official views of the USGS or of the symposium organizers and sponsors. This publication is produced with the understanding that the United States Government is authorized to reproduce and distribute reprints for government purposes.

Fused In Sarcoma Is A Novel Regulator Of Manganese Superoxide Dismutase Gene Transcription, Sanjit Kumar Dhar, Jiayu Zhang, Jozsef Gal, Yong Xu, Lu Miao, Bert C. Lynn, Haining Zhu, Edward J. Kasarskis, Daret K. St. Clair

Toxicology and Cancer Biology Faculty Publications

AIMS: FUsed in sarcoma (FUS) is a multifunctional DNA/RNA-binding protein that possesses diverse roles, such as RNA splicing, RNA transport, DNA repair, translation, and transcription. The network of enzymes and processes regulated by FUS is far from being fully described. In this study, we have focused on the mechanisms of FUS-regulated manganese superoxide dismutase (MnSOD) gene transcription.

RESULTS: Here we demonstrate that FUS is a component of the transcription complex that regulates the expression of MnSOD. Overexpression of FUS increased MnSOD expression in a dose-dependent manner and knockdown of FUS by siRNA led to the inhibition of MnSOD gene transcription. …

Redox-Modulated Phenomena And Radiation Therapy: The Central Role Of Superoxide Dismutases, Aaron K. Holley, Lu Miao, Yanming Zhao, Daret K. St. Clair, William H. St. Clair

Toxicology and Cancer Biology Faculty Publications

SIGNIFICANCE: Ionizing radiation is a vital component in the oncologist's arsenal for the treatment of cancer. Approximately 50% of all cancer patients will receive some form of radiation therapy as part of their treatment regimen. DNA is considered the major cellular target of ionizing radiation and can be damaged directly by radiation or indirectly through reactive oxygen species (ROS) formed from the radiolysis of water, enzyme-mediated ROS production, and ROS resulting from altered aerobic metabolism.

RECENT ADVANCES: ROS are produced as a byproduct of oxygen metabolism, and superoxide dismutases (SODs) are the chief scavengers. ROS contribute to the radioresponsiveness of …

The Soldiers In Societies: Defense, Regulation, And Evolution, Li Tian, Xuguo Zhou

Entomology Faculty Publications

The presence of reproductively altruistic castes is one of the primary traits of the eusocial societies. Adaptation and regulation of the sterile caste, to a certain extent, drives the evolution of eusociality. Depending on adaptive functions of the first evolved sterile caste, eusocial societies can be categorized into the worker-first and soldier-first lineages, respectively. The former is marked by a worker caste as the first evolved altruistic caste, whose primary function is housekeeping, and the latter is highlighted by a sterile soldier caste as the first evolved altruistic caste, whose task is predominantly colony defense. The apparent functional differences between …

Systems And Methods For Diagnosis And Monitoring Of Bacteria-Related Conditions, Sylvia Daunert, Sapna K. Deo, Patrizia Pacini, Anjali Kumari Struss, Harohalli Shashidhar, Deborah R. Auer Flomenhoft, Nilesh Raut

Chemistry Faculty Patents

The presently-disclosed subject matter provides systems, methods, and kits for diagnosing and/or monitoring a bacteria-related condition of interest in a subject by providing a cell sensing system, each system containing a reporter molecule capable of detecting binding of a quorum sensing molecule and capable of generating a detectable signal.

Soy Products With Reduced Levels Of Sulfite, Free Radicals And Methanethiol, William L. Boatright

Animal and Food Sciences Faculty Patents

Soy products or compositions are treated with a food grade iodate compound or a cystine compound to reduce levels of methanethiol, sulfites and sulfite free-radicals, sulfate free radicals and other free radicals generated from sulfite free radicals in the soy products or compositions by 1% to 95%.

Who Is Most Vulnerable To Social Rejection? The Toxic Combination Of Low Self-Esteem And Lack Of Negative Emotion Differentiation On Neural Responses To Rejection, Todd B. Kashdan, C. Nathan Dewall, Carrie L. Masten, Richard S. Pond Jr., Caitlin Powell, David Combs, David R. Schurtz, Antonina S. Farmer

Psychology Faculty Publications

People have a fundamental need to belong that, when satisfied, is associated with mental and physical well-being. The current investigation examined what happens when the need to belong is thwarted—and how individual differences in self-esteem and emotion differentiation modulate neural responses to social rejection. We hypothesized that low self-esteem would predict heightened activation in distress-related neural responses during a social rejection manipulation, but that this relationship would be moderated by negative emotion differentiation—defined as adeptness at using discrete negative emotion categories to capture one's felt experience. Combining daily diary and neuroimaging methodologies, the current study showed that low self-esteem and …

Soybean Variety Selection, Chad Lee, Carrie Ann Knott, Edwin L. Ritchey

Agriculture and Natural Resources Publications

Soybean variety selection is one of the most important and most difficult management decisions a producer must make each year. It takes careful identification of the problems and needs of the production system. When done properly it increases the chance the variety will reach its full yield potential while eliminating costs for unnecessary traits, resulting in highly profitable returns.

Technology To Improve Sprayer Accuracy, Timothy S. Stombaugh

Agriculture and Natural Resources Publications

A number of new technologies have been introduced over the last several years aimed at improving the accuracy of spray application, but do they really work? The purpose of this document is to highlight the most common causes of application errors then discuss the array of new sprayer technologies that are becoming available, how they might affect application accuracy, and pitfalls involved in using them.

What Kind Of Seed Dormancy Might Palms Have?, Jerry M. Baskin, Carol C. Baskin

Biology Faculty Publications

Palm diaspores are reported to have various kinds of dormancy. However, (1) the embryo is underdeveloped; (2) the endocarp is water permeable; and (3) the diaspores take a long time to germinate. Thus, we conclude that the diaspores of the majority of palm species have morphophysiological dormancy (MPD). The ones that do not have MPD are morphologically dormant.

Parenting Styles And Adjustment Outcomes Among College Students, Keisha M. Love, Deneia M. Thomas

Educational, School, and Counseling Psychology Faculty Publications

Research has demonstrated that parenting styles partially explain college students’ academic adjustment. However, to account for academic adjustment more fully, additional contributors should be identified and tested. We examined the fit of a hypothesized model consisting of parenting styles, indicators of well-being, and academic adjustment among 315 college students. The model demonstrated a close fit to the data and contained several significant paths.

Phanerochaete Chrysosporium Pretreatment Of Biomass To Enhance Solvent Production In Subsequent Bacterial Solid-Substrate Cultivation, Wanying Yao, Sue E. Nokes

Biosystems and Agricultural Engineering Faculty Publications

This study investigated pretreatment of corn stover using solid substrate cultivation (SSC) of Phanerochaete chrysosporium (P. chrysosporium) to improve subsequent accessibility to cellulose. Thereafter, Clostridium thermocellum (C. thermocellum) was directly inoculated onto the pretreated biomass to accomplish hydrolysis, followed by solventogenesis by introducing Clostridium beijerinckii (C. beijerinckii).

An enzyme suite containing laccase, lignin peroxidase and manganese peroxidase activity was detected during the cultivation of P. chrysosporium on corn stover within 288 h at an initial moisture content 𝓌_H2O = 80% (mass of water/total mass). Incubation factors, such as substrate moisture content and cultivation …

Sex Differences In A Mouse Model Of Multiple Sclerosis: Neuropathic Pain Behavior In Females But Not Males And Protection From Neurological Deficits During Proestrus, Elizabeth J. Rahn, Tommaso Iannitti, Renee R. Donahue, Bradley K. Taylor

Physiology Faculty Publications

BACKGROUND: Multiple sclerosis (MS), a demyelinating disease of the central nervous system, is one of the most prevalent neurological disorders in the industrialized world. This disease afflicts more than two million people worldwide, over two thirds of which are women. MS is typically diagnosed between the ages of 20-40 and can produce debilitating neurological impairments including muscle spasticity, muscle paralysis, and chronic pain. Despite the large sex disparity in MS prevalence, clinical and basic research investigations of how sex and estrous cycle impact development, duration, and severity of neurological impairments and pain symptoms are limited. To help address these questions, …

Anti-Lysophosphatidic Acid Antibodies Improve Traumatic Brain Injury Outcomes, Peter J. Crack, Moses Zhang, Maria Cristina Morganti-Kossmann, Andrew J. Morris, Jonathan M. Wojciak, Jonathan K. Fleming, Ila Karve, David Wright, Maithili Sashindranath, Yona Goldshmit, Alison Conquest, Maria Daglas, Leigh A. Johnston, Robert L. Medcalf, Roger A. Sabbadini, Alice Pébay

Internal Medicine Faculty Publications

BACKGROUND: Lysophosphatidic acid (LPA) is a bioactive phospholipid with a potentially causative role in neurotrauma. Blocking LPA signaling with the LPA-directed monoclonal antibody B3/Lpathomab is neuroprotective in the mouse spinal cord following injury.

FINDINGS: Here we investigated the use of this agent in treatment of secondary brain damage consequent to traumatic brain injury (TBI). LPA was elevated in cerebrospinal fluid (CSF) of patients with TBI compared to controls. LPA levels were also elevated in a mouse controlled cortical impact (CCI) model of TBI and B3 significantly reduced lesion volume by both histological and MRI assessments. Diminished tissue damage coincided with …