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Understanding Intracellular Redox Regulation In Methanogens: Characterization Of The Components And Targets Of The Nadph-Dependent Thioredoxin System From Methanosarcina Acetivorans, Addison Clark Mccarver

Graduate Theses and Dissertations

All cells have a reduced intracellular environment. In the presence of oxygen, the non-specific oxidation of intracellular components leads to the production of reactive oxygen species (ROS) within cells leading to oxidative stress. During oxidative stress labile cofactors (e.g. Fe-S clusters) are lost and deleterious disulfide bonds are formed within proteins. Intracellular redox maintenance systems are used to direct reducing equivalents towards the repair of oxidatively-damaged proteins. The thioredoxin system is the ubiquitous intracellular redox system, found in virtually all species. The canonical thioredoxin system is comprised of a NADPH-dependent thioredoxin reductase (TrxR) that functions to reduced thioredoxin (Trx). Although …

Our Land Is Not Just Soil: Knowing, Feeling, And Doing Environmental Activism In The Arkansas Ozarks, Ramey Arlen Moore

Graduate Theses and Dissertations

The Ozarks is a holey place, an ancient plateau formed from ancient rocks and the sediment of millions of years of living things. The Ozarks is also, from another perspective a place made from a mesh of overlapping lines, lines of migration, lines of living things, lines of water movement over and through the land. This dissertation engages with the practice of conservation and environmentalism as it is performed and lived by Ozarkers and Arkansawyers, natives and transplants. Based on more than a year of ethnographic fieldwork conducted with the Buffalo River Watershed Alliance, Save the Ozarks, Arkansas Master Naturalists, …

Methodologies For Solving Integrated Transportation And Scheduling Problems, Fereydoun Adbesh

Graduate Theses and Dissertations

This research proposes novel solution techniques to optimize two real-world problems in the area of scheduling and transportation. We first consider a model for optimizing the operations of dredges. In this problem, scheduling and assignment decisions are integrated across a finite planning horizon. Additional constraints and problem elements explicitly considered include, but are not limited, to environmental work window restrictions, budget limitations, dredge operation rates and schedule-dependent dredge availability. Our approach makes use of Constraint Programming (CP) to obtain quality and robust solutions within an amount of time small enough to be useful to practitioners. The expanded feature set of …

Measurement Of Peptoid Concentration Using Uv Spectroscopy, Katie Holland

Chemical Engineering Undergraduate Honors Theses

The goal of this research is to establish a relationship between ultraviolet adsorption and peptiod concentration to be used to determine the concentration of an unknown peptoid sample. This will allow for the measurement of concentration differences of peptoid samples before and after incubation with membrane surfaces. Samples were prepared nine know concentrations and diluted 50 fold. The UV absorbances of each sample was measured using a UV spectrophotometer at wavelengths from 200 to 450 nanometers. This process was repeated, and the maximum absorbance of each replicate was averaged to yield an absorbance value for each concentration of peptoid. …

A Risk-Based Method For Estimating The Carbon Sequestration Budget For A Mixed Hardwood Forest, Erin Cooper

Chemical Engineering Undergraduate Honors Theses

Carbon Dioxide (CO₂) levels in the atmosphere have risen from approximately 310 ppm in the 1950’s to over 400 ppm as of 2015. This rise in CO₂ has likely resulted in the observed warming trend of the earth’s atmosphere in the same time frame, causing significant concern in the scientific community. Several mitigation strategies have arisen to combat the upward trend of CO₂ emissions in recent decades, among them being carbon sequestration- the process of capturing CO₂ from the atmosphere and holding it for an extended period of time. This study used the U.S. Forest …

New Technologies For Evaluating Putting Green Surface Characteristics, Daniel Patrick O'Brien

Graduate Theses and Dissertations

Golf course putting greens require a high level of inputs predicated on timely, well informed decisions. Putting green quality is ultimately defined by performance of the turfgrass, and this performance encompasses both (i) the health and vitality of the turfgrass plants, and (ii) the ability of the turfgrass to exist as a playing surface, as it interacts with the golf ball. For golf course superintendents, accurately and efficiently assessing moisture levels and nutrient status are critical for guiding maintenance practices. This research sought to examine new ways for measuring each of these parameters, and compared them to ground-truth data and/or …

Detection Of Survival And Proliferation Of Sulfate Reducers Under Simulated Martian Atmospheric And Soil Conditions, Sergio Mosquera Mora

Graduate Theses and Dissertations

Numerous studies have tried to determine the survivability and proliferation of microorganisms under simulated Martian conditions. Furthermore, most of them have been focused on the ability of these microbes to cope with high brines’ salt (NaCl) concentrations inherent of the Martian surface. However, there are not studies related to the ability of bacteria to survive on subsurface environments that have increasing concentrations of sulfate compounds. For this research, a group of microorganisms known as sulfate-reducing bacteria or simply sulfate reducers were chosen due to their ability to use sulfate compounds as terminal electron acceptors to produce metabolic energy, their tolerance …

Literary And Cinematic Representations Of Neoliberal Forms Of Contemporary Violence In Latin America With Special Interest In Mexico And Colombia, Ivan De Jesus Iglesias

Graduate Theses and Dissertations

In the last decades, with an increased rhythm and greater intensity, the so-called neoliberal violence has come to play a relevant role within the history of world societies. The Latin American institutional, political, social, and economic changes of the 1970’s and 1980’s, especially those produced under dictatorships, contributed to create the conditions for the implementation of the processes of economic liberalization and global market as part of the concept of institutional modernization and cultural globalization that gave rise to the neoliberal mentality. In this context, neoliberalism becomes hegemonic as a mode of discourse and is incorporated into the way individuals …

Characterization Of Glyphosate-Resistant Amaranthus Palmeri (Palmer Amaranth) Tolerance To Als- And Hppd-Inhibiting Herbicides, Shilpa Singh

Graduate Theses and Dissertations

Palmer amaranth is a principal weed problem across the United States and is resistant to several herbicide modes of action. By 2008, Palmer amaranth in Arkansas was reported to be resistant to both ALS- and EPSPS-inhibitors, but the predominant resistance mechanisms are yet to be explored. Herbicide options with different modes of action are needed to provide effective Palmer amaranth control and HPPD-inhibitors (e.g. mesotrione) are among these. The goal of this research was to elucidate the resistance profile of Palmer amaranth in Arkansas to ALS herbicides and glyphosate (EPSPS-inhibitor) as well as evaluate the differential tolerance of Palmer amaranth …

A Molecular Diagnostic Survey Of Pathogens And Parasites Of Honey Bees, Apis Mellifera L., From Arkansas And Oklahoma, Dylan Cleary

Graduate Theses and Dissertations

The health and viability of colonies of the honey bee, Apis mellifera, in the United States have fluctuated dramatically over the past decade. This poses a substantial threat to agricultural production in this country. Currently, no single factor has been identified for this decline. Rather, it has been suggested that the interaction between multiple biotic and abiotic stressors may be responsible. Among these factors are pesticides, habitat loss, climate and weather, parasites and pathogens, and colony management techniques. For this reason, it is important to examine the prevalence of honey bee parasite and pathogen infection at the state level in …

The Economic Benefits Of The South African Agricultural Research Council’S Wheat Breeding Program: 1992–2015, Matthew James Coale

Graduate Theses and Dissertations

Although classified as an upper middle-income country by the World Bank, food insecurity is still a concern throughout South Africa, as was evident in 2014–2015 when a drought left 22% of households food insecure. As such, agricultural research in South Africa is needed specifically in plant breeding to increase yields and help mitigate future food insecurity. To fill this need, the South African government funds the Agricultural Research Council (ARC), which conducts holistic research on wheat and other crops. Wheat is important to South African food security; due to the significant drop in wheat area planted since the abolishment of …

Evaluation Of Very-Long-Chain Fatty Acid-Inhibiting Herbicides In Arkansas Rice Production, John Ansley Godwin

Graduate Theses and Dissertations

Because of the evolution of herbicide-resistant weeds, such as barnyardgrass and red rice in rice, there is a need for alternative herbicide sites of action. Very-long-chain fatty acid (VLCFA)-inhibiting herbicides are not labeled for use in U.S. rice production; however, this site of action (SOA) has been used with success in Asian rice. The VLCFA-inhibiting herbicides pethoxamid, pyroxasulfone, acetochlor, and S-metolachlor were evaluated for rice tolerance and control of commonly problematic weeds in Arkansas rice at various rates and application timings. Pyroxasulfone and S-metolachlor were deemed unfit for use in rice production because of negative effects on rice visual injury, …

Population Dynamics Of Ouachita Dusky Salamanders (Desmognathus Brimleyorum) In A Managed Forest Landscape, Kelly Marie Halloran

Graduate Theses and Dissertations

With anthropogenic alteration of landscapes increasing world-wide, managed forests are increasingly important as providers of ecosystem services including habitat for numerous wildlife species. It is crucial to maintain a balance between timber production and conservation of biodiversity on managed landscapes. Salamander populations can play key roles in the function and diversity of temperate forest ecosystems. Several studies have reported negative effects of forestry on terrestrial plethodontid salamanders, but less research has focused on stream-dwelling species, evaluated mechanisms driving observed shifts in abundance, or described the dynamics of populations residing in managed forests. Using a Before-After-Control-Impact design, we examined the effects …

Habitat Ecology, Trophic Interactions, And Distribution Of Endangered Himalayan Musk Deer In The Nepal Himalaya, Kapil Kishor Khadka

Graduate Theses and Dissertations

This dissertation seeks to explore and assess the habitat selection, trophic interactions and distribution of Himalayan musk deer. Chapter one deals with seasonal diet analysis of musk deer along with the overlap in consumption with livestock during summer. Microhistological technique was employed to assess dietary consumption. Results showed that Abies spectabilis, Pinus wallichiana, and Berberis species constituted the major portion of musk deer’s diet. Dietary breadth measured by the Shannon index was found higher in winter compared to summer. Although musk deer and livestock shared a considerable number of plant species in their diets, the consumption however was significantly different …

Green Chemistry Oxidative Modification Of Peptoids Utilizing Bleach And Tempo, Jesse Leland Roberts

Graduate Theses and Dissertations

Biotherapeutic drugs, derived from biological molecules such as proteins and DNA, are becoming an integral and exceptionally critical aspect of modern medicine. Compared to common pharmaceutical drugs, biotherapeutics are much larger in size and have greater target specificity, allowing them to treat many chronic diseases ranging from cancer to rheumatoid arthritis. The major issue with protein based therapeutics is that they readily undergo proteolysis, or enzymatic degradation, when administered through subcutaneous injections. Traditionally, biotherapeutic modification procedures have centered on the use of PEG derivatives. This process, called PEGylation, is unfavorable due to the increases in molecular weights of the proteins …

Characterization Of Multiple-Herbicide-Resistant Echinochloa Colona From Arkansas, Christopher Edward Rouse

Graduate Theses and Dissertations

Echinochloa species are highly adaptive weeds that have the potential to impact crops in a variety of environments. This has positioned them as the most problematic weeds in a number of USA cropping systems with some species having the distinction of the 'worst herbicide-resistant weeds' in the world. Recent evidence has positioned Echinochloa colona (junglerice) as the most dominant in Arkansas and throughout the Mid-South, USA, especially in rice (Oryza sativa L.) and soybean (Glycine max L.) production fields. A history of extensive herbicide-use for management and a lack of integrated or diverse approaches to management have led to rampant …

Developing Algorithms For Quantifying The Super Resolution Microscopic Data: Applications To The Quantification Of Protein-Reorganization In Bacteria Responding To Treatment By Silver Ions, Sai Divya Challapalli

Graduate Theses and Dissertations

Histone-like nucleoid structuring proteins (HNS) play significant roles in shaping the chromosomal DNA, regulation of transcriptional networks in microbes, as well as bacterial responses to environmental changes such as temperature fluctuations. In this work, the intracellular organization of HNS proteins in E. coli bacteria was investigated utilizing super-resolution fluorescence microscopy, which surpasses conventional microscopy by 10–20 fold in spatial resolution. More importantly, the changes of the spatial distribution of HNS proteins in E. coli, by addition of silver ions into the growth medium were explored. To quantify the spatial distribution of HNS in bacteria and its changes, an automatic method …

Peptoid-Modified Bicelles As Surrogate Cell Membranes For Membrane Protein Sensors And Analytics, Helya Najafi

Graduate Theses and Dissertations

Membrane-affiliated interactions are significant in understanding cell function, detecting biomarkers to diagnose disease, and in testing the efficiency of new therapeutic targets. Model membrane systems have been developed to study membrane proteins, allowing for stable protein structure and maintaining native activity. Bicelles, disc-shaped lipid bilayers created by combining long- and short-chain phospholipids, are the model membrane system of focus in this study. Bicelles are accessible from both sides and have a wide size range, which make them attractive for studying membrane proteins without affecting function. In this work, bicelles were functionalized with two peptoids to alter the edge and face …

Seasonality And Management Of Spotted Wing Drosophila On Berry Crops And Wild Hosts In Arkansas, Lizabeth Rubi Herrera

Graduate Theses and Dissertations

Spotted wing drosophila (SWD), Drosophila suzukii (Matsumura) is a serious invasive pest of small fruit production in North and South America and Europe since 2008. The primary control method is to apply insecticides every 5-7 days. Therefore, it is necessary to develop control tactics that are less chemical dependent to enhance an integrated approach for SWD management. The objectives of this study were to monitor SWD populations in different crop systems and adjacent landscape habitats; identify wild hosts of SWD; evaluate the effectiveness of insect exclusion netting in tunnels to prevent blackberry and blueberry infestations, and compare effects of netted …

Role Of Incompatibility Group 1 (Inci1) Plasmid-Encoded Factors On Salmonella Enterica Antimicrobial Resistance And Virulence, Pravin Raghunath Kaldhone

Graduate Theses and Dissertations

Foodborne illnesses are a leading cause of infectious diseases in the world. Among enteric organisms Salmonella is a key pathogen. It’s high prevalence in poultry and other food-animal sources make it imperative to study. Salmonella has the ability to modify its genetic content with help of mobile genetic elements such as plasmids. Incompatibiltiy group 1 (IncI1) plasmids are commonly reported in Salmonella. This study evaluates role on IncI1 plasmids in antimicrobial resistance and virulence in Salmonella. Genetic determinants of resistance and virulence are noted among our IncI1-containing Salmonella isolates. These genetic elements are also transferable and reported to carry respective …

Evaluation Of The Impact Of Tart Cherries Polyphenols On The Human Gut Microbiota And Phenolic Metabolites In Vitro And In Vivo, Alba Claudia Mayta-Apaza

Graduate Theses and Dissertations

Tart cherries are polyphenol abundant stone fruits claimed to exert health benefits further of its nutritional properties. The abundant phytochemicals content in tart cherries also referred as dietary polyphenols have been considered as an effective natural antioxidant when added in daily diet. However, it has been hypothesized the intervention of gut microbiota on the overall functionality of such compounds. This thesis contains a wide-ranging literature review focused on tart cherry as a crop, current market, functional food, and several health benefits. Furthermore, the research done describes and in vitro and in vivo assays of a short-term dietary intervention of tart …

A Comparative Life Cycle Assessment Of Nutritionally Equivalent Meals With And Without Pork, Kelli Young

Graduate Theses and Dissertations

The following report details a life cycle assessment of several dietary and meal scenarios with and without pork. The goal of the LCA was to identify the impacts of greenhouse gas emissions, water use, and land use of pork containing and porkless diets and meal plans in a field-to-fork analysis. The dietary and meal plan scenarios are iso-caloric meaning they contain the same number of calories. The first set of diets is based on a USDA consumption pattern, 2000 kcal per day. This diet was used to create three other dietary scenarios with and without pork. The USDA recommended food …

Characterization And Mechanisms Of Anthocyanin Degradation And Stabilization, Nathan Blaine Stebbins

Graduate Theses and Dissertations

Anthocyanins (ACYs) are polyphenol compounds found in nature, which contribute vivid colors to many fruits and vegetables, while also possessing significant health benefits. These pigments range in color from orange-red to blue-violet and could serve as natural colorants to replace artificial additives. There is a great demand from consumers to have fewer artificial compounds in their foods. However, the relatively instability of ACYs must be further understood in order to limit color degradation before they can completely replace synthetic colorants.

ACYs slowly degrade over time, but there is a knowledge gap on their fate and mechanisms causing degradation. In order …

Development And Characterization Of Rice Genotypes For Water Use Efficiency And Drought Resistance, Anuj Kumar

Graduate Theses and Dissertations

Rice, the second largest staple food crop, uses 30% of global fresh water to complete its life cycle worldwide. Water deficits worldwide have become a serious problem affecting rice growth and ultimately grain yield. To solve the water problem globally, improvement of water use efficiency (WUE) and other drought resistance (DR) traits in rice genotypes would be a useful strategy using advanced genomics tools. In this study, our objectives were to 1) analyze phenotypes of the USDA rice mini-core collection (URMC) for WUE and DR related traits, 2) correlate drought response phenes for physiological traits and grain yield in the …

Evaluation Of Provisia Rice In Arkansas Rice Production Systems, Zachary Lancaster

Graduate Theses and Dissertations

With the continued evolution of herbicide resistance, it is becoming more difficult to achieve adequate weed control in Arkansas rice production systems. Thus, new technologies are needed to combat these troublesome weeds. A new non-GMO, herbicide-resistant rice type is under development that is resistant to quizalofop, an acetyl coenzyme A carboxylase (ACCase)-inhibiting herbicide that will allow for selective grass weed control in rice. With the commercialization of this technology by 2018, research was conducted to determine the best fit for quizalofop-resistant rice in current production systems. Experiments included evaluation of off-target movement of quizalofop, determination of plant-back risk from quizalofop …

Horizontal Transmission Of Helicoverpa Armigera Nucleopolyhedrovirus (Hearnpv) In Soybean Fields Infested With Helicoverpa Zea (Boddie), Joseph Lee Black

Graduate Theses and Dissertations

Helicoverpa armigera Nucleopolyhedrovirus (HearNPV) is a commercially available viral biopesticide that targets Heliothines, including Helicoverpa zea (Boddie) (Lepidoptera: Noctuidae), the most damaging pest of soybean (Glycine max (L.) Merrill) in the Mid-South. Previous formulations of HearNPV have been well studied; however, no research has been published on current formulations. The first objective of this thesis was to assess the rate of horizontal transmission of HearNPV in a soybean field infested with H. zea when HearNPV was applied as a bio-insecticide, and to identify arthropods that are important obligate carriers in dissemination. HearNPV spread 200 feet in 3 fields, and was …

Fall Risk In Sedentary, Recreationally Active, And Masters Athlete Older Adults, Felicia Elizabeth Squires

Graduate Theses and Dissertations

The purpose of this study was to examine whether different habitual activity levels may affect balance ability in older adults. Balance must be studied as poor balance increases likelihood of falls. This study examined activity levels in older adults and effect on balance ability. Fifty-nine older adults aged 66.5 ± 9.5 participated. Three groups were separated by physical activity level. First group had 13 masters athletes, older adults performing least 150 minutes of aerobic activity a week and competing in nationally sanctioned event within the last six months. Twenty-seven older adults comprised recreationally active group performing at least 150 minutes …

Effects Of Pre-Chiller Temperature On The Microbial Ecology Of Whole Bird Carcass Rinses, Rachael Elizabeth Blevins

Graduate Theses and Dissertations

Upon entering a poultry processing facility, birds are already contaminated with a variety of microorganisms. It is the responsibility of the processor to reduce these numbers to deliver a wholesome product to customers. This is not an easy task as there are ample opportunities for further microbial contamination. Some of these opportunities are obvious. For example, any areas where contaminants could be washed off one bird and onto another are always an area for concern, i.e. the scalder or the chiller. There are numerous opportunities for contamination that are not so obvious. These incidents of contamination are not necessarily due …

The Role Of Non-Profit Organizations In Shaping Food Law And Corporate Responsibility In The United States, Melissa M. Card

Journal of Food Law & Policy

This article assesses whether the United States should adopt an institutional process similar to Europe’s through giving non-profit organizations a role in shaping food law and corporate responsibility. Part I provides a comparative analysis of genetically engineered product regulations in the US and the EU. Part II explains how the institutional processes of the US and the EU led to the varying regulations. Part III asserts that the United States should change its institutional process through allowing public universities and private colleges to influence food law and corporate responsibility.

E. Coli Separatome-Based Protein Expression And Purification Platform, Ellen M. Brune, Robert Beitle Jr., Mohammad M. Ataai, Patrick R. Bartlow, Ralph Henry

Patents Granted

Provided is a separatome-based peptide, polypeptide, and protein expression and purification platform based on the juxtaposition of the binding properties of host cell genomic peptides, polypeptides, and proteins with the characteristics and location of the corresponding genes on the host cell chromosome of E. coli. The separatome-based protein expression and purification platform quantitatively describes and identifies priority deletions, modifications, or inhibitions of certain gene products to increase chromatographic separation efficiency, defined as an increase in column capacity, column selectivity, or both, with emphasis on the former. Moreover, the separatome-based protein expression and purification platform provides a computerized knowledge tool that, …