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Comparative Analysis Of Conformational Transition Pathways In Homologous Proteins, Dylan Sebastien Ogden

Graduate Theses and Dissertations

Molecular dynamics (MD) simulations are routinely used to study the dynamics of proteins. However, conventional MD limited to the sampling of local conformational changes as the functionally important conformational transitions of proteins often extend beyond the timescales of the simulations employed, for example, membrane transport proteins. We have determined the combination of multiple MD based techniques that allows for a rigorous characterization of energetics and kinetics of large-scale conformational changes in membrane proteins. The methodology is based on biased, nonequilibrium collective variable based simulations including nonequilibrium pulling, string method with swarms of trajectories, bias-exchange umbrella sampling, and rate estimation techniques. …

Quizalofop-Resistant Rice Response To Quizalofop When Exposed To Low Rates Of Glyphosate And Imazethapyr, Navdeep Godara, Jason K. Norsworthy, Thomas R. Butts, Trenton L. Roberts, Edward E. Gbur

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Injury to quizalofop-resistant rice was reported in some fields following postemergence applications of quizalofop. Glyphosate-resistant (GR) corn, cotton, and soybean, and imidazolinone-resistant rice are grown near quizalofop-resistant rice. Herbicide drift from glyphosate and imazethapyr and the resulting crop injury and potential yield loss is a cause of concern for producers. Field experiments conducted near Colt, and Keiser, AR, in 2021 evaluated whether low rates of glyphosate or imazethapyr interact with sequential quizalofop applications to exacerbate injury to quizalofop-resistant rice compared to quizalofop applications alone. Herbicide treatments consisted of a low rate of glyphosate (90 g ae ha(-1)) or imazethapyr (10.7 …

Engineer And Test A Biodegradable Microneedle Patch To Deliver Meloxicam For Managing Pain In Cattle, Katherine Alejandra Miranda Munoz

Graduate Theses and Dissertations

Microneedle patches are a promising source for transdermal diffusion of macromolecules and are designed to painlessly penetrate the skin. In this study, a biodegradable chitosan microneedle patch to deliver meloxicam for managing pain in cattle was tested. The potential of reuse of the polymeric solution to fabricate the patches, optimization of fabrication, morphological analysis of the microneedle patch and analysis of preservation of the chemical composition after sterilization were evaluated. In-vitro analysis consisted of studying in-vitro penetration mechanical properties, compression testing analysis of microneedle patch, and in-vitro drug release analysis. In-vivo studies were performed to analyze the dissolution capability of …

Short-Term Changes Within An Agroforestry System Managed At Three Basal Areas With Fescue Compared To Orchardgrass, Matthew Janorschke

Graduate Theses and Dissertations

Silvopasture practices incorporate forages and woody perennials in the same system in order to create a sustainable system. The main objective of this study was to determine if one of two forage species can be successfully established in order to investigate agroforestry as a management system to promote soil health. Within a bottomland mixed hardwood forest in the Arkansas River Valley, an agroforestry system was established to evaluate three basal areas (determined as the cross-sectional area of trees at breast height) (7, 11.5, and 16 m2/ha) with mounded areas and two forages, tall fescue (Lolium arundinaceum [Schreb.] Darbysh) and orchardgrass …

Seasonal Patterns In Activity And Occupancy Dynamics Of The Imperiled Spotted Turtle (Clemmys Guttata), Ellery Vaughn Lassiter

Graduate Theses and Dissertations

Wetland ecosystems are often spatially patchy across a landscape and exhibit seasonal patterns in water levels, resulting in the need for aquatic wildlife to use several different wetland patches across a season. The ecology of semi-aquatic freshwater turtles is especially complex because individuals often move among a variety of habitats to meet life history needs and these habitat requirements often differ across a season. Understanding the temporal and spatial scale in which turtles move and distribute across the landscape is vital for effective management, especially in the face of continued habitat fragmentation and climate change. Thus, we sought to understand …

Nitrogen Management In Rice Under Suboptimal Soil Conditions, Payton Suzanne Rhea

Graduate Theses and Dissertations

In Mid-South rice (Oryza sativa, L.) production, nitrogen (N) fertilizer management for pureline varieties is most often recommended as a single preflood (SPF) or two-way split (2WS) application in a direct-seeded, delayed-flood system. Most of the N fertilizer is typically applied at the four- to six-leaf stage onto dry soil, and the second application, if necessary, into the floodwater during early reproductive growth stages (referred to as midseason). Environmental factors frequently prohibit growers from applying early N fertilizer under optimal dry soil conditions. A study was conducted to determine the best N fertilization management practices to utilize in rice when …

The Binding Of The Micronutrient Transition Metals To The Alkylation Products Of Chemical Warfare Agent, Sulfur Mustard, And Thiols, Potentially Giving New Understanding To Physiological Effects Of Exposure And Increased Toxicity, Colin O'Donnell

Graduate Theses and Dissertations

Model compounds, 3,6,9-trithaiundecane-1,11-dicarboxylic acid (TTDPA), 2,5,8-trithianonane-1,9-dicarboxylic acid (TTDAA), and 1,11-diamide-3,6,9-trithiaundecane (TTDAce), closely related to the adducts formed by cysteine alkylation of the chemical weapon, sulfur mustard, were synthesized. It is shown that TTDPA forms complexes with key metal micronutrients: copper, nickel, cobalt, manganese, and zinc. Though the strength of binding to TTDPA varies, the complexes in many cases precipitate from solution. All metals produced a visible precipitate upon interaction with TTDPA under the conditions tested, however only Cu2+, Mn2+, and Zn2+ produced enough to be measured. The mass of formed precipitate seemed to peak at an equimolar ratio of TTDPA …

Primate Olfaction: A Phylogenetic Analysis Of Cribriform Plate Morphology, Amber Cooper

Anthropology Undergraduate Honors Theses

Decreased olfaction, or smell, is a diagnostic characteristic of primates. Despite this, olfaction remains important for diet and social behaviors in primates. To assess how morphological changes impact olfactory-based behaviors between the two major clades of primates, Strepsirrhini and Haplorrhini, this study examined the surface area of the cribriform plate, the bony interface between the brain and nasal cavity. Previous work has found several functional associations between cribriform plate morphology and species diet/ ecology, making this structure possibly more reflective of a species reliance on olfaction in its environment. Primate social structure, such as average group size, mating system, and …

Molecular Diagnostic Survey Of Honey Bee, Apis Mellifera L., Pathogens And Parasites From Arkansas, Usa, Dylan Cleary, Allen L. Szalanski

Entomology Faculty Publications and Presentations

Managed honey bee populations have fluctuated over the past several decades in the U.S. While a single factor has not been identified for these losses, the interaction between multiple biotic and abiotic stressors have been suggested to be responsible. Of major concern are several invasive parasite and pathogen species as well as colony management. A single honey bee colony often suffers from multiple harmful agents, that may act synergistically and cause greater declines in bee health. We conducted a survey to detect known and lesser-known honey bee parasites and pathogens. While previous research has primarily focused on commercially managed colonies, …

Fast Five With The Tfsc, November 2022, University Of Arkansas, Fayetteville. Wally Cordes Teaching And Faculty Support Center

Fast Five with the TFSC

University of Arkansas, Fayetteville--Wally Cordes Teaching and Faculty Support Center newsletter

Economic Contribution Of Agriculture And Food To Arkansas’ Gross Domestic Product 1997-2021, Leah English, Jennie Popp

AAES Research Reports and Research Bulletins

Agricultural production, processing, and retail industries are major contributors to Arkansas’ GDP. Agriculture contributes to the state economy through direct agricultural production, value-added processing, and agricultural retail activities. The Agriculture and Food Sector, which is comprised of agricultural production, processing, and retail industries, promotes economic strength through various interactions with other industries. The use of non-agricultural goods and services as inputs into the agricultural sector promotes diversified growth in Arkansas’ economy and thus plays a vital role in maintaining economic stability throughout the state. This report 1) compares the relative size of the Agriculture and Food Sector in Arkansas with …

Modifications Of Cellulose-Based Biomaterials For Biomedical Applications, Nour Fatema, Ruben Michael Ceballos, Chenguang Fan

Chemistry & Biochemistry Faculty Publications and Presentations

Cellulose is one of the most abundant organic compounds in nature and is available from diverse sources. Cellulose features tunable properties, making it a promising substrate for biomaterial development. In this review, we highlight advances in the physical processes and chemical modifications of cellulose that enhance its properties for use as a biomaterial. Three cellulosic products are discussed, including nanofibrillated, nanocrystalline, and bacterial cellulose, with a focus on how each may serve as a platform for the development of advanced cellulose-based biomaterials for Biomedical applications. In addition to associating mechanical and chemical properties of cellulosic materials to specific applications, a …

Hydrologic And Environmental Thresholds In Stream Fish Assemblage Structure Across Flow Regimes, J. Tyler Fox, Daniel D. Magoulick

Biological Sciences Faculty Publications and Presentations

The characteristic pattern of variation in flow magnitude, frequency, duration, timing, and rate of change defines the flow regime of rivers and streams and is a key driver of ecosystem processes in fluvial ecosystems. Under-standing how freshwater biotic assemblages change across gradients of hydrology and anthropogenic-source disturbance in different streamflow regimes is crucial to managing for sustainable environmental flows and watershed conservation. We compiled long-term (1916-2016) occurrence records for fishes collected in the Ouachita-Ozark Interior Highlands and West Gulf Coastal Plain streams, together with hydrologic metrics calculated from daily streamflow data measured at USGS stream gauging stations (n = 111), …

Fast Five With The Tfsc, October 2022, University Of Arkansas, Fayetteville. Wally Cordes Teaching And Faculty Support Center

Fast Five with the TFSC

University of Arkansas, Fayetteville--Wally Cordes Teaching and Faculty Support Center newsletter

Development Of An Integrated Salt Cartridge-Reverse Electrodialysis (Red) Device To Increase Electrolyte Concentrations To Biomedical Devices, Efecan Pakkaner, Jessica L. Orton, Caroline G. Campbell, Jamie A. Hestekin, Christa N. Hestekin

Chemical Engineering Faculty Publications and Presentations

Emerging technologies in nanotechnology and biomedical engineering have led to an increase in the use of implantable biomedical devices. These devices are currently battery powered which often means they must be surgically replaced during a patient’s lifetime. Therefore, there is an important need for a power source that could provide continuous, stable power over a prolonged time. Reverse electrodialysis (RED) based biopower cells have been previously used to generate continuous power from physiologically relevant fluids; however, the low salinity gradient that exists within the body limited the performance of the biopower cell. In this study, a miniaturized RED biopower cell …

The Relationship Between Performance, Body Composition, And Processing Yield In Broilers: A Systematic Review And Meta-Regression, Diego A. Martinez, Jordan T. Weil, Nawin Suesuttajit, Cole Alan Umberson, Abdullah Scott, Craig N. Coon

Poultry Science Faculty Publications and Presentations

This study aims to model the relationship among performance, whole body composition, and processing yield through meta-regression. Scientific papers found in Scopus and Google Scholar were included if they reported results and variability values of an actual experiment in the three mentioned groups of variables using a single broiler genetic line. Weighted mean effect sizes were determined with a random model, the risk of bias was determined, and heterogeneity was considered an indicator of usefulness. Meta-regressions considered the effect sizes of the response variable and the percent change in one or more variables as predictors. A 78-row database was built …

Interaction Between The Hypothalamo-Pituitary-Adrenal And Thyroid Axes During Immobilization Stress, Hakeem J. Kadhim, Wayne J. Kuenzel

Poultry Science Faculty Publications and Presentations

The location of corticotropin-releasing hormone receptor 2 (CRH-R2) on thyrotropes within the avian anterior pituitary (APit) and its activation by different stressors indicate a possible communication between hypothalamo-pituitary-adrenal (HPA) and thyroid (HPT) axes. Therefore, an experiment was designed to 1) compare the timing of major components of the HPT axis to those of the HPA axis; 2) address whether stressors activating the HPA axis may simultaneously upregulate components of the HPT axis. Blood, brain, and APit were sampled from chicks prior to stress (control) and 15, 30, 60, 90, and 120 min following immobilization (IM) stress. The nucleus of the …

Prospective Life Cycle Assessment And Cost Analysis Of Novel Electrochemical Struvite Recovery In A U.S. Wastewater Treatment Plant, Karla G. Morrissey, Leah English, Greg Thoma, Jennie S. Popp Ph.D.

Chemical Engineering Faculty Publications and Presentations

Nutrient recovery in domestic wastewater treatment has increasingly become an important area of study as the supply of non-renewable phosphorus decreases. Recent bench-scale trials indicate that co-generation of struvite and hydrogen using electrochemical methods may offer an alternative to existing recovery options utilized by municipal wastewater treatment facilities. However, implementation has yet to be explored at plant-scale. In the development of novel nutrient recovery processes, both economic and environmental assessments are necessary to guide research and their design. The aim of this study was to conduct a prospective life cycle assessment and cost analysis of a new electrochemical struvite recovery …

Volatiles In Berries: Biosynthesis, Composition, Bioavailability, And Health Benefits, Inah Gu, Luke Howard, Sun-Ok Lee

Food Science Faculty Publications and Presentations

Abstract

A Novel Activated Biochar-Based Immunosensor For Rapid Detection Of E. Coli O157:H7, Abdus Sobhan, Fei Jia, Lisa Cooney Kelso, Sonatan Kumar Biswas, Kasiviswanathan Muthukumarappan, Changyong Cao, Lin Wei, Yanbin Li

Biological and Agricultural Engineering Faculty Publications and Presentations

E. coli O157:H7, one of the major foodborne pathogens, can cause a significant threat to the safety of foods. The aim of this research is to develop an activated biochar-based immunosensor that can rapidly detect E. coli O157:H7 cells without incubation in pure culture. Biochar was developed from corn stalks using proprietary reactors and then activated using steam-activation treatment. The developed activated biochar presented an enhanced surface area of 830.78 m2/g. To develop the biosensor, the gold electrode of the sensor was first coated with activated biochar and then functionalized with streptavidin as a linker and further immobilized with biotin-labeled …

Recent Findings On Phosphorus Digestibility Of Feed Ingredients In Broilers, Jay Hampton, Wenting Li, Franco Mussini, Katie Hilton, Janet Remus, Samuel J. Rochell

Proceedings of the Arkansas Nutrition Conference

Accurately meeting the dietary P needs of broilers is critical to ensure optimal bird performance, health, and welfare without causing undue environmental burdens associated with excess dietary P excretion. Phosphorus is commonly supplied in broiler diets from inorganic phosphates derived from non-renewable sources, but it has been estimated that peak P production will occur between 2030-2040 and that the global supply of P could be depleted within this century (Cordell and Drangert, 2009; Nest and Cordell, 2012). To address these concerns, inorganic P use in agriculture, including use in broiler diet formulation, requires careful stewardship. To this end, the dietary …

Reduction Of Protein Levels In Broiler Feed For Commercial Application – A German Case, Andreas Lemme, Kilian Fenske, Heiner Westendarp, Mathias Guhe, Elmar Rother

Proceedings of the Arkansas Nutrition Conference

A project was initiated to apply dietary CP reduction under commercial conditions. The main objective was to demonstrate and validate that dietary CP can be reduced without compromising broiler performance in a production system which is already rather efficient. In addition, we wanted to demonstrate the potential of dietary CP reduction on reducing N-excretions especially in the context of German revised regulations and monitoring attempts. Finally, as previous research suggested, few further aspects such as impact of dietary CP reduction on litter quality and quantity, footpad health, change of ingredient inclusion levels and related impact on sustainability impact factors were …

State Of The Art Pullet And Breeder Nutrition, Rick Van Emous

Proceedings of the Arkansas Nutrition Conference

During the last six to seven decades, broilers have been successfully selected for maximum growth and feed efficiency (Zuidhof et al., 2014). Modern fast-growing broilers reach a body weight of 2.0 to 2.5 kg in 35 to 45 days with an average daily growth of 55 or more gram a day (Augère-Granier, 2019). In a study with different broiler strains representative of broilers in 1957 or 1978 were compared with a broiler strain from 2005 (Zuidhof et al., 2014). The 2005 strain showed, over a 56-day growth period, a 4.6 times higher growth rate and a 50% lower feed conversion …

Amino Acids Were Not All Created Equal, Peter H. Selle, Shemil P. Macelline, Peter V. Chrystal, Sonia Y. Liu

Proceedings of the Arkansas Nutrition Conference

The contention that amino acids were not all created equal is based on the simple premise that intestinal uptakes of non-bound (synthetic, crystalline, feed-grade) amino acids are more rapid than their protein-bound counterparts. The post-enteral ramifications of this difference in bioequivalence are amplified in broiler chickens given their express growth rates and just one complication is the post-prandial oxidation of amino acids. The lack of bioequivalence between non-bound and protein-bound amino acids is a real obstacle to the development and adoption of reduced-crude protein diets that have the potential to promote sustainable chicken-meat production Thus, the purpose of this paper …

Recent Advancements On Calcium And Phosphorus Recommendations In Broilers, Justina Caldas, Marcelo Silva

Proceedings of the Arkansas Nutrition Conference

Calcium and phosphorus have been recognized essential nutrients in chickens since 1950’s (Lesson & Summers, 2001) playing important roles in bone development, among other functions. Calcium is assumed an inexpensive nutrient in animal least cost formulation while phosphorus is considered expensive and scant. The actual economic impact comes from the influence of calcium on phosphorus requirements, changes in phosphorus digestibility, buffer capacity, gut health, trace mineral absorption, fat digestibility, welfare traits, etc. Both minerals have important interactions to be considered during formulation. Few changes have been made over the past 20 years to calcium and phosphorus recommendations because these values …

Decoding The Gut Microbiome; Providing Solutions For Poultry Production, Nichoals Evans, Peter Karnezos, Curtis Novak, Diana Ayala, Emily Kimminau, Kay Russo

Proceedings of the Arkansas Nutrition Conference

The term “microbiome” refers to all the micro-organisms within a particular environment. In poultry, the microbiome is influenced by the barn, diet, and age of the birds and is believed to modulate immunity and inflammation. In the past, culture methods were primarily used to evaluate the presence of the various micro-organisms present in the microbiome; however, recent technological advances in genomic sequencing have revolutionized sample analysis. This technology has opened new avenues of research in poultry production and our understanding of the associated health challenges. Turkey cellulitis has been a major economic and health concern for many years. Traditional bacterial …

Application Of Nutritional Immunology In The Mitigation Of Economic And Production Losses In The Poultry Industry Associated With Food-Borne Pathogens, Coccidiosis, And Necrotic Enteritis., Shahna Fathima, Ramesh K. Selvaraj

Proceedings of the Arkansas Nutrition Conference

Sub-therapeutic doses of antibiotics were used in poultry production since the 1950s for improved production, prophylaxis, and animal welfare. Extensive and indiscriminatory use of antibiotics led to the emergence of antibiotic resistance in food-borne pathogens of public health significance (Jones & Ricke, 2003). As per the United States Centre for Disease Control, more than 2.8 million infections in 2019 were caused by multidrug resistant bacteria. Due to public health concerns, the use of antibiotic growth promoters in livestock production was prohibited by Sweden and Denmark in 1986 and 1998 respectively (Hammerum et al., 2007). The European Union banned the use …

Recovery Of Soil Microbial Diversity And Functions Along A Tropical Montane Forest Disturbance Gradient, Renee Sniegocki, Jessica B. Moon, Abigail L. Rutrough, Jude Gireneus, Jaya Seelan Sathiya Seelan, Michael C. Farmer, David C. Weindorf, Kusum Naithani

Biological Sciences Faculty Publications and Presentations

Logging and forest conversion are occurring at alarming rates in tropical forests. These disturbances alter soil microbial community structure and functions. While direct links between changes in soil properties, such as pH and microbial community structure are well established, the indirect effects of logging and forest conversion on soil microbial community structure and functions are poorly understood. We used a space-for-time substitution to investigate the changes in soil microbial diversity and functions across a forest recovery gradient in the tropical montane forests of northern Borneo. We used surface (top 5 cm) soil to assess soil physicochemical and microbial (next-generation DNA …

Abiogenesis: The Carter Argument Reconsidered, Daniel P. Whitmire

Mathematical Sciences Faculty Publications and Presentations

The observation of life on Earth is commonly believed to be uninformative regarding the probability of abiogenesis on other Earth-like planets. This belief is based on the selection effect of our existence. We necessarily had to find ourselves on a planet where abiogenesis occurred, thus nothing can be inferred about the probability of abiogenesis from this observation alone. This argument was first formalized in a Bayesian framework by Brandon Carter. Though we definitely had to find ourselves on a planet where abiogenesis occurred, I argue here that (1) the Carter conclusion is based on what is known as the ‘Old …

Context For Reproducibility And Replicability In Geospatial Unmanned Aircraft Systems, Cassandra Howe, Jason A. Tullis

Geosciences Faculty Publications and Presentations

Multiple scientific disciplines face a so-called crisis of reproducibility and replicability (R&R) in which the validity of methodologies is questioned due to an inability to confirm experimental results. Trust in information technology (IT)-intensive workflows within geographic information science (GIScience), remote sensing, and photogrammetry depends on solutions to R&R challenges affecting multiple computationally driven disciplines. To date, there have only been very limited efforts to overcome R&R-related issues in remote sensing workflows in general, let alone those tied to unmanned aircraft systems (UAS) as a disruptive technology. This review identifies key barriers to, and suggests best practices for, R&R in geospatial …