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Twinning Behavior Of Molecule-Adapted Gaussian-Type Orbitals (Gtos) In Cyclo-Hydrocarbons, Tong-Hyok Cha, Gum-Chol Kim, Kwang-Jin Ri, Jin-Nam Kim, Yong-Su Pak
Twinning Behavior Of Molecule-Adapted Gaussian-Type Orbitals (Gtos) In Cyclo-Hydrocarbons, Tong-Hyok Cha, Gum-Chol Kim, Kwang-Jin Ri, Jin-Nam Kim, Yong-Su Pak
Turkish Journal of Chemistry
The saturated cyclo-hydrocarbons CnH2n (n = 3–7) were constructed by the iterative coupling of the structural unit groups (SUGs), specifically the SUG-CH2C2 fragment, which was previously established for molecular basis optimization. For the McLean–Chandler 6-311+G basis set, under the SUG perturbation, the outer (s′, p′) and diffuse (sʺ, pʺ) primitive Gaussian type orbitals for the core-atom C* of SUG-CH2C2 undergo an off-center spatial displacement into a twinning configuration. Specifically, the s-type twins (s′, sʺ) share identical Gaussian exponents and are symmetrically shifted toward the two neighboring carbon atoms, while the p-type twins (p′, pʺ) exhibit a matching configuration. Generally, this …
Phytochemical Characterization, Cytotoxic Effects, And Potential Oxidative Dna Damage-Modulating Activities Of Arum Italicum Extract, Oznour Mourat Moustafa, Hülya Yağar
Phytochemical Characterization, Cytotoxic Effects, And Potential Oxidative Dna Damage-Modulating Activities Of Arum Italicum Extract, Oznour Mourat Moustafa, Hülya Yağar
Turkish Journal of Chemistry
Arum italicum is traditionally utilized in the Thrace region for the treatment of hepatic and dermatological disorders; however, experimental evidence supporting these ethnopharmacological applications remains limited. As oxidative stress-induced DNA damage is an important contributor to the pathogenesis of liver and skin diseases, the aim in the present study was to investigate the ability of A. italicum leaf and tuber extracts to modulate oxidative DNA damage in vitro using nontumorigenic and cancerous hepatic and cutaneous cell models. Phytochemical profiling, antioxidant capacity, and cytotoxic activity were also assessed to support and contextualize the observed DNA damage-related effects.In vitro investigations were conducted …
Facile One-Step Activated Glassy Carbon Electrode For Sensitive Tryptophan Sensing In Yogurt, Sevi̇lay Erdoğan Kablan, Ahmet Çeti̇nkaya, Si̇bel Özkan, Emi̇rhan Nemutlu
Facile One-Step Activated Glassy Carbon Electrode For Sensitive Tryptophan Sensing In Yogurt, Sevi̇lay Erdoğan Kablan, Ahmet Çeti̇nkaya, Si̇bel Özkan, Emi̇rhan Nemutlu
Turkish Journal of Chemistry
Activation of glassy carbon electrodes (GCEs) in tailored solution environments introduces oxygenated surface functionalities such as hydroxyl, carboxyl, and quinone groups. These modifications enhance electron‐transfer kinetics and strengthen interactions with target analytes, thereby improving electrochemical sensitivity. In this study, square-wave voltammetry was used, and the most suitable supporting electrolyte for tryptophan (TRP) analysis was a pH 3 Britton–Robinson buffer. The cyclic voltammetry potential range and number of cycles for the Act-GCE were obtained as 0–1.5 V and seven cycles, respectively. The activated electrode exhibited excellent analytical performance, with a linear response for TRP over 0.20–6.28 μM, a detection limit of …
Thiophene-Carbazole-Based Covalent Organic Polymer Electrodes For Electrochromic And Supercapacitor Applications, Si̇nem Altinişik
Thiophene-Carbazole-Based Covalent Organic Polymer Electrodes For Electrochromic And Supercapacitor Applications, Si̇nem Altinişik
Turkish Journal of Chemistry
In this study, a thiophene-carbazole-based conjugated organic polymer was successfully synthesized on indium tin oxide (ITO)/glass and graphite sheet substrates using in situ oxidative polymerization. In terms of electrochromic properties, the electrodes exhibited significant color change from light yellow-green to dark gray in the potential range of 0 V to 1.2 V, with optical contrast ranging from 84.2% to 47.2% and coloring efficiency of 171.3 cm2/C. The prepared PCBP-Th_ITO/glass electrode also exhibited fast switching times (tb = 0.89 s and tc = 2.05 s) at 650 nm. Furthermore, 90% optical stability was maintained after 1000 cycles. In terms of energy …
Fabrication Of Cross-Linked Thiophene-Coumarin-Fluorene Donor–Acceptor Pentamer Thin Films For Electrochromic Devices Application, Ari̇fe Aktaş, Mert Akgün, Mücahi̇t Özdemi̇r, Sermet Koyuncu
Fabrication Of Cross-Linked Thiophene-Coumarin-Fluorene Donor–Acceptor Pentamer Thin Films For Electrochromic Devices Application, Ari̇fe Aktaş, Mert Akgün, Mücahi̇t Özdemi̇r, Sermet Koyuncu
Turkish Journal of Chemistry
Functionalized p-conjugated polymers have emerged as promising electrochromic materials due to their well-defined molecular structures, facile synthesis, and ability to form smooth and homogeneous thin films. Furthermore, surface cross-linking enhances the mechanical and environmental stability of these films while improving their durability during electrochemical operation. In this study, a unique band gap-tunable pentamer (FBP) was developed featuring a D-A-D-A-D configuration, which includes thiophene, coumarin, and fluorene. Cross-linked films (FBPX) were obtained using both spray and electrospray methods in the presence of tetrathiol-based crosslinkers and 366 nm light, thanks to the functionalizable allyl groups present in the FBP structure. UV–Vis analysis …
Synthesis And Catalytic Activity Of Water-Soluble Ruthenium(Ii) P-Cymene Complexes In Tandem Nitroarene Reduction/N-Methylation And Transfer Hydrogenation, Si̇nem Çakir, Serdar Batikan Kavukcu, Hayati̇ Türkmen
Synthesis And Catalytic Activity Of Water-Soluble Ruthenium(Ii) P-Cymene Complexes In Tandem Nitroarene Reduction/N-Methylation And Transfer Hydrogenation, Si̇nem Çakir, Serdar Batikan Kavukcu, Hayati̇ Türkmen
Turkish Journal of Chemistry
In this study, a series of water-soluble ruthenium(II) p-cymene complexes bearing carboxylic acid-functionalized ligands (Ru1–Ru3) were synthesized, fully characterized (1H NMR, 13C NMR, and FT-IR), and evaluated in two distinct catalytic transformations: tandem nitroarene reduction/N-methylation and transfer hydrogenation. Of the catalysts tested, Ru1 exhibited superior catalytic activity in both systems. Under optimized conditions (1 mol% Ru1, 8 mmol NaBH4, 110 °C, 2 h in methanol), Ru1 promoted the one-pot tandem transformation of nitrobenzene to N-methylaniline with up to 93% conversion using methanol as a sustainable C1 and H2 source. Furthermore, Ru1 proved highly effective in the transfer hydrogenation of acetophenone …
Samarium-Doped Ceria Catalysts For Boron-Aluminum Composite Propellants: Effect Of Synthesis Method, Di̇lara Güçtaş Gürel, Mehmet Ali̇ Faruk Öksüzömer
Samarium-Doped Ceria Catalysts For Boron-Aluminum Composite Propellants: Effect Of Synthesis Method, Di̇lara Güçtaş Gürel, Mehmet Ali̇ Faruk Öksüzömer
Turkish Journal of Chemistry
Solid propellants based on ammonium perchlorate (AP) are widely used in rocket and missile propulsion systems due to their high energy density and reliable combustion characteristics. Although aluminum (Al) is the conventional metal fuel in AP-based formulations, boron (B) has gained increasing attention as a partial or full substitute owing to its significantly higher volumetric energy density. However, the low combustion efficiency of boron particles remains a critical challenge, making the use of catalysts essential to enhance the thermal decomposition of AP and overall propellant-burning performance. In this study, samarium-doped ceria (SDC20) catalysts were synthesized by three different methods including …
Rapid Synthesis Of Agcu Bimetallic Nanodendrites With Enhanced Catalytic Activity For 4-Nitrophenol Reduction, Jun Liu, Hongguang Liao, Xuanyan Liu
Rapid Synthesis Of Agcu Bimetallic Nanodendrites With Enhanced Catalytic Activity For 4-Nitrophenol Reduction, Jun Liu, Hongguang Liao, Xuanyan Liu
Turkish Journal of Chemistry
Herein, AgCu nanodendrites were fabricated via a facile one-step displacement reaction at ambient temperature with Zn powder as the reducing agent. The morphology, structure, and composition of the products were systematically characterized by transmission electron microscopy, X-ray diffraction, and X-ray photoelectron spectroscopy. The results demonstrate that the structure and morphology of the catalysts are strongly dependent on the Ag/Cu molar ratio. The catalytic performance was evaluated by the reduction of 4-nitrophenol (4-NP) at room temperature, in comparison with monometallic Ag and Cu catalysts. The catalytic activity follows the order Ag1Cu1 > Ag1Cu3 > Ag3Cu1 > Ag > Cu. The optimized Ag1Cu1 catalyst achieves 98.6% …
Effects Of Washing, Oxidation, Carboxylation, And Hydrophobicity On The Antibacterial Activity Of Graphene Oxide And Reduced Graphene Oxide, Emi̇r Boztepe, Ceren Poyraz, Ruki̇ye Taşdemi̇r, Ebru Önem, Ümran Sofu, Keri̇m Yapici
Effects Of Washing, Oxidation, Carboxylation, And Hydrophobicity On The Antibacterial Activity Of Graphene Oxide And Reduced Graphene Oxide, Emi̇r Boztepe, Ceren Poyraz, Ruki̇ye Taşdemi̇r, Ebru Önem, Ümran Sofu, Keri̇m Yapici
Turkish Journal of Chemistry
In this study, the effects of number of washes, oxidation degree, carboxylation, and hydrothermal reduction temperature on the antibacterial activity of graphene oxide (GO) and reduced graphene oxide (rGO) nanomaterials were investigated. GO derivatives with different numbers of washes (1–5W) and oxidation levels (3X, 6X, and 9X), carboxylated GO (GO-COOH), and rGO samples obtained at different hydrothermal reduction temperatures (100, 140, and 180 °C) were characterized by X-ray diffraction, field-emission scanning electron microscopy, Fourier-transform infrared spectroscopy, zeta potential analysis, and Raman spectroscopy, and were subsequently evaluated for antibacterial activity against gram-positive Staphylococcus aureus (S. aureus) and gram-negative Escherichia coli (E. …
Cobalt-Substituted Hydroxyapatite As A Potential Basis Of Biomaterials: Synthesis, Crystal-Chemistry Properties And Antibacterial Activity, Maria M. Vlasova, Ksenia S. Stasenko, Evgeny Bulanov
Cobalt-Substituted Hydroxyapatite As A Potential Basis Of Biomaterials: Synthesis, Crystal-Chemistry Properties And Antibacterial Activity, Maria M. Vlasova, Ksenia S. Stasenko, Evgeny Bulanov
Turkish Journal of Chemistry
This paper presents the results of the synthesis of solid solutions of cobalt-substituted hydroxyapatite of the composition Ca10-xCox(PO4)6(OH)2 by the solid-phase and solution method. The formation of only the composition of Ca9.5Co0.5(PO4)6(OH)2 has been reliably established, whereas an increase in the cobalt content, as well as an increase in the temperature of synthesis and calcination of the samples prepared in solution, leads to the formation of stable mixtures of calcium and cobalt phosphates. The crystal structure has been refined for Ca9.5Co0.5(PO4)6(OH)2 (a = 9.4121(28) Å, c = 6.8762(20) Å, V = 527.54(35) Å3; R-Bragg = 2.455%) under the assumption of …
The Effect Of Seedling Age On Nickel (Ni) Accumulation In Maize (Zea Mays L.), Tuba Göçergi̇l, Hava Şeyma İnci̇
The Effect Of Seedling Age On Nickel (Ni) Accumulation In Maize (Zea Mays L.), Tuba Göçergi̇l, Hava Şeyma İnci̇
Turkish Journal of Agriculture and Forestry
One of the most significant problems facing different ecosystems worldwide is the pollution of soil and water resources with heavy metals, which are harmful to biota. Metals are absorbed by plant roots through soil-plant interaction, leading to accumulation in plants. The plant's growth phase is one of the most important factors in heavy metal uptake and accumulation. Among heavy metal elements, nickel is one of the serious environmental pollutants and plant growth inhibitors due to its toxicity and persistent nature at high concentrations, as well as its bioaccumulation in ecosystems. This study aims to investigate how nickel accumulation in plant …
Species-Specific Metal Uptake Thresholds In Riparian Macrophytes: A Biological Framework For Ecological Risk Assessment, Reyhan Sağlam, Ferhat Gökbulak
Species-Specific Metal Uptake Thresholds In Riparian Macrophytes: A Biological Framework For Ecological Risk Assessment, Reyhan Sağlam, Ferhat Gökbulak
Turkish Journal of Agriculture and Forestry
Anthropogenic pressures on freshwater ecosystems have increased metal contamination in riparian zones; however, biological thresholds that distinguish tolerable exposure from ecologically significant accumulation remain poorly defined. This study investigated species-specific thresholds for heavy metal uptake in riparian macrophytes to establish a biologically grounded framework for ecological risk assessment in impacted streams. A gradient encompassing five sites was used to sample four dominant macrophyte species: Typha latifolia, Phragmites australis, Lythrum salicaria, and Persicaria lapathifolia. Concentrations of cadmium (Cd), chromium (Cr), copper (Cu), iron (Fe), nickel (Ni), lead (Pb), and zinc (Zn) in aboveground plant biomass were examined in relation to their …
Genetic Variation, Heritability, And Forage Yield Path Analysis Of Iranian Desert Wheat Grass (Agropyron Desertorum Fisch. Ex Link) Genotypes, Reza Mohammadi, Alireza Pourmohammad, Meli̇h Okçu
Genetic Variation, Heritability, And Forage Yield Path Analysis Of Iranian Desert Wheat Grass (Agropyron Desertorum Fisch. Ex Link) Genotypes, Reza Mohammadi, Alireza Pourmohammad, Meli̇h Okçu
Turkish Journal of Agriculture and Forestry
Desert wheat grass (Agropyron desertorum Fisch. ex Link) is a valuable species in the temperate zones that exhibits tolerance to cold and drought and naturally grows in arid and semiarid regions of Iran. This research was conducted to investigate the phenotypic diversity of 50 selected genotypes of Iranian A. desertorum based on several agromorphological traits and forage production. Genotypes were planted in a randomized complete block design with four replications in 2016. The results showed highly significant differences among genotypes for all traits (p < 0.01). Broad-sense heritability estimates ranged from low to medium for the evaluated traits. The highest heritability values were observed for crown diameter, plant height (PH) and dry matter yield (DMY), while the genetic advance (GA) values were found for forage fresh weight and DMY. Selection based on traits with high GA and heritability is expected to be effective, indicating sufficient genetic variation for breeding programs. The number of stems (NS) and PH explained more than 73% of the entire variation in DMY in the stepwise multiple linear regression analysis. Principal coordinate analysis (PCoA) revealed that the first three coordinates (PCo1–PCo3) explained 82.4% of the phenotypic variation. According to the PCoA plot based on these coordinates, the genotypes were grouped into two groups. In the factor analysis (FA), factor 1 (FAC1) had a positive relationship with forage yield and NS; therefore, it was identified as a biomass factor. Cluster analysis divided the genotypes into two groups: cluster 1 contained 19 genotypes, and cluster 2 consisted of 31 genotypes. Significant phenotypic diversity was detected among the A. desertorum genotypes, indicating a valuable germplasm to employ in forage varietal improvement programs. Furthermore, the examined genotypes can serve as valuable germplasm for development of a core collection of A. desertorum in Iran.
Integrating Fine-Scale Topography And Stand Structure To Explain Herb-Layer Diversity In Forest Ecosystems, Carla-Maria Aparaschive, Paul Sestras, Alina M. Truta, Irina M. Morar, Catalina Dan, Monica Boscaiu, Florin Ioras, Adriana F. Sestras
Integrating Fine-Scale Topography And Stand Structure To Explain Herb-Layer Diversity In Forest Ecosystems, Carla-Maria Aparaschive, Paul Sestras, Alina M. Truta, Irina M. Morar, Catalina Dan, Monica Boscaiu, Florin Ioras, Adriana F. Sestras
Turkish Journal of Agriculture and Forestry
Herb-layer diversity in temperate forests emerges from the interaction between stand structure and fine-scale environmental variation. We studied eight mixed beech–hornbeam and oak–hornbeam plots distributed along a short altitudinal gradient (170–310 m) and contrasting slope aspects in East Europe. For each plot, we measured tree diameter, height and crown-base height, and derived stand structural indices (tree density, basal area, Gini coefficients for DBH diameter at breast height and total height, and median crown base height). Herb-layer communities were characterized using standard diversity indices and Ellenberg indicator values. We then used Jaccard similarity to explore tree–herb cooccurrence and Spearman correlations to …
Strigolactone-Mediated Regulation Of Physiological, Biochemical, And Gene Expression Responses Enhances Salinity Tolerance In Strawberry (Fragaria × Ananassa), Nora M. Al Aboud, Aishah Alatawi, Maryam Maryam, Mi̇kdat Şi̇mşek, Adel A. Rezk, Hossam S. El-Beltagi, Bader Y. Alsubaie, Othman Al-Dossary, Ahmed M. Ismail, Anvar İbrahimov
Strigolactone-Mediated Regulation Of Physiological, Biochemical, And Gene Expression Responses Enhances Salinity Tolerance In Strawberry (Fragaria × Ananassa), Nora M. Al Aboud, Aishah Alatawi, Maryam Maryam, Mi̇kdat Şi̇mşek, Adel A. Rezk, Hossam S. El-Beltagi, Bader Y. Alsubaie, Othman Al-Dossary, Ahmed M. Ismail, Anvar İbrahimov
Turkish Journal of Agriculture and Forestry
Salinity stress is a limiting factor that restricts growth, physiology, and fruit quality of strawberry (Fragaria × ananassa), particularly in irrigated and arid regions across the globe. The current investigation focused on unveiling the role of strigolactone (GR24, 5 µM) in the mitigation of NaCl-induced stress (100 mM) under greenhouse conditions. Salinity stress massively reduced plant performance, including fresh biomass (16.5 g), dry biomass (4.3 g), photosynthetic rate (7.9 μmol CO2 m−2 s−1), and fruit yield (6 fruits per plant), along with a decline in fruit quality (7.2 °Brix). In contrast, foliar application of strigolactone sig-nificantly enhanced the growth and …
A Lightweight Multitask Adaptive Fusion Network With Channel Attention For Uav-Based Crop Detection And Classification, Xuanyu Yue, Zhenyu Wan
A Lightweight Multitask Adaptive Fusion Network With Channel Attention For Uav-Based Crop Detection And Classification, Xuanyu Yue, Zhenyu Wan
Turkish Journal of Agriculture and Forestry
Unmanned aerial vehicles (UAVs) have become essential tools in precision agriculture, facilitating large-scale monitoring of crop health, weed proliferation, and overall field conditions. However, conventional single-task recognition models encounter significant challenges when implemented on resource-constrained UAV platforms, particularly in detecting densely distributed small objects, managing scale variations, and addressing occlusions. To address these challenges, this paper proposes a channel attention-based adaptive fusion network (CNAF-Net) specifically designed for agricultural scenarios. CNAF-Net utilizes MobileNetV3 for hierarchical feature extraction and integrates a channel attention-guided adaptive fusion mechanism that dynamically combines multiscale features across detection, classification, and segmentation tasks. Experiments conducted on the WeedMap …
The Collagen-Derived Tripeptide Gly-Pro-Hyp Suppresses Fgf-5 Expression And Promotes Anagen Induction In C3h/Hej Mice, Yun-Ho Kim, Jin Seok Kim, Woong Yong Kim, Hyun Jung Jo, Zhe Piao, Yeo Cho Yoon
The Collagen-Derived Tripeptide Gly-Pro-Hyp Suppresses Fgf-5 Expression And Promotes Anagen Induction In C3h/Hej Mice, Yun-Ho Kim, Jin Seok Kim, Woong Yong Kim, Hyun Jung Jo, Zhe Piao, Yeo Cho Yoon
Turkish Journal of Biology
Background/aim: Collagen-derived peptides have shown potential in promoting hair growth, yet their effects on catagen-inducing factors remain unexplored. In this study, the hair growth-promoting effects and molecular mechanisms of Collagen-Tripep20 (CTP), a collagen tripeptide preparation containing 3.2% Gly-Pro-Hyp (GPH), were explored, with a specific focus on fibroblast growth factor 5 (FGF-5) regulation.
Materials and methods: Female C3H/HeJ mice were randomly assigned to four groups (n = 10/group): control, CTP-LOW (400 mg/ kg/day), CTP-HIGH (800 mg/kg/day), and GPH (25.6 mg/kg/day). Following dorsal depilation, test substances were administered dailyvia oral gavage for 7 weeks. Hair regrowth was assessed by visual scoring, histological …
Pifithrin-Α Enhances Ex Vivo Hematopoietic Stem Cell Expansion, Nesli̇han Meri̇ç, Pinar Çolakoğlu Erkan, Fati̇h Kocabaş
Pifithrin-Α Enhances Ex Vivo Hematopoietic Stem Cell Expansion, Nesli̇han Meri̇ç, Pinar Çolakoğlu Erkan, Fati̇h Kocabaş
Turkish Journal of Biology
Background/aim: Hematopoietic stem cells (HSCs) are essential for treating hematological disorders; however, their low abundance and limited proliferative capacity restrict their clinical use. This study investigated whether pifithrin-α (PFT-α), a small-molecule p53 inhibitor with known genoprotective properties, could enhance the ex vivo expansion of HSCs.
Materials and methods: Mouse lineage-negative (Lin⁻) cells were isolated by magnetic depletion, while human umbilical cord blood (hUCB) and mouse bone marrow (mBM) mononuclear cells were obtained using density gradient centrifugation. CD34⁺ cells were subsequently isolated by fluorescence-activated cell sorting using an antimouse CD34 antibody. The isolated cells were cultured in StemSpan SFEM II (STEMCELL …
Anti-Helicobacter Pylori Activity Of Polycation-Coated Plga Nanoparticles Loaded With Juglone–Silver Complex, Tural Safarov, Emrah Şefi̇k Abamor, Serap Acar, Murat Topuzoğullari, Bükre Kiran Üner, Kübra Karadaş, Seçi̇l Kaya, Zi̇şan Toprak
Anti-Helicobacter Pylori Activity Of Polycation-Coated Plga Nanoparticles Loaded With Juglone–Silver Complex, Tural Safarov, Emrah Şefi̇k Abamor, Serap Acar, Murat Topuzoğullari, Bükre Kiran Üner, Kübra Karadaş, Seçi̇l Kaya, Zi̇şan Toprak
Turkish Journal of Biology
Background/aim: The rising antibiotic resistance of Helicobacter pylori requires the development of novel treatment approaches. Although natural products (e.g., juglone (5-hydroxy-1,4-naphthoquinone)) and metal antimicrobials (e.g., silver) hold some promise as alternatives, drawbacks like the toxicity and instability of these materials limit their clinical use. Combining juglone and silver with coordination bonds can overcome these drawbacks and yield a more effective antimicrobial complex.
Materials and methods: Juglone–silver (J–Ag) complex was synthesized, encapsulated into PLGA nanoparticles (J–Ag@PLGA), and coated with Eudragit (J–Ag@PLGA+eu). Structural and physicochemical properties of the produced samples were examined using MALDI-TOF MS, FTIR, and UV–Vis spectroscopies; dynamic light scattering; …
Understanding Antimicrobial Peptide Activation In Mesenchymal Stem Cells Through The Aryl Hydrocarbon Receptor Pathway And Inflammatory Signals, Cansu Özdemi̇r Saka, Beyza Turgut, Ceren Tuncay, Cemi̇l Can Eylem, Emi̇rhan Nemutlu
Understanding Antimicrobial Peptide Activation In Mesenchymal Stem Cells Through The Aryl Hydrocarbon Receptor Pathway And Inflammatory Signals, Cansu Özdemi̇r Saka, Beyza Turgut, Ceren Tuncay, Cemi̇l Can Eylem, Emi̇rhan Nemutlu
Turkish Journal of Biology
Background/aim: Antimicrobial peptides (AMPs) are small peptides involved in host defense and have been widely studied for their roles in innate immunity against microbial pathogens. Mesenchymal stem cells (MSCs), which provide stromal support in tissues such as bone marrow, are also capable of secreting AMPs, although the signaling pathways controlling this function remain unclear. The present study investigates the role of the aryl hydrocarbon receptor (AHR) signaling, a xenobiotic response pathway, in AMP production by MSCs.
Materials and methods: To assess AMP activation, human MSCs were stimulated with the agonist FICZ and antagonist SR1. TNF-α + IL-1β and LPS were …
Design And Synthesis Of A Novel Benzoxazine-Based Fluorophore With Potential For Lipid Droplet Targeting In Cancer Cells, Eda Açikgöz, Burak Kuzu, Mustafa Çakir
Design And Synthesis Of A Novel Benzoxazine-Based Fluorophore With Potential For Lipid Droplet Targeting In Cancer Cells, Eda Açikgöz, Burak Kuzu, Mustafa Çakir
Turkish Journal of Biology
Background/aim: Fluorescence-based visualization of lipid droplets is essential for understanding lipid-related mechanisms in cancer and other metabolic diseases. This study aimed to design and evaluate a novel benzoxazine-based fluorescent probe for selective lipid droplet imaging compatible with multiplexed fluorescence applications.
Materials and methods: A novel benzoxazine-based fluorophore (EA), inspired by the structural features of Nile Red, was synthesized via a two-step strategy. Structural characterization was performed using nuclear magnetic resonance and high-resolution mass spectrometry. Biological performance was assessed in cancer cells under fixed- and live-cell imaging conditions, including cytotoxicity evaluation and compatibility with dual staining.
Results: EA selectively localized to …
Msx2 Is An Erα-Associated Transcription Factor That Sustains Proliferative Capacity And Is Associated With Favorable Prognosis In Luminal Breast Cancer, Gamze Turan, Eli̇f Kansiz, Gözde Korkmaz, Hande Özkan
Msx2 Is An Erα-Associated Transcription Factor That Sustains Proliferative Capacity And Is Associated With Favorable Prognosis In Luminal Breast Cancer, Gamze Turan, Eli̇f Kansiz, Gözde Korkmaz, Hande Özkan
Turkish Journal of Biology
Background/aim: Breast cancer (BC) is the most frequently diagnosed malignancy among women and exhibits substantial molecular heterogeneity. Luminal tumors represent the largest molecular subtype and are primarily driven by estrogen receptor alpha (Erα), ahormone-dependent transcription factor (TF) that regulates gene expression programs controlling proliferation, differentiation, and endocrine response. Herein, the study aimed to identify functionally relevant TFs regulated by ERα as part of a complex regulatory program in luminal BC.
Materials and methods: An integrative transcriptomic approach was applied to identify TFs regulated by ERα in luminal BC. Differential gene expression analysis was integrated with RNA-seq data obtained from estrogen …
Comparison Of Tnfα, Ifnγ, And Dss In Modeling Inflammatory Bowel Disease In Murine Enteroids And Assessment Of The Role Of Zonulin Inhibitor Larazotide Acetate, Sema Nur Gür, Burcu Pervi̇n, Mehmet Emi̇n Şeker, Fati̇ma Aerts Kaya
Comparison Of Tnfα, Ifnγ, And Dss In Modeling Inflammatory Bowel Disease In Murine Enteroids And Assessment Of The Role Of Zonulin Inhibitor Larazotide Acetate, Sema Nur Gür, Burcu Pervi̇n, Mehmet Emi̇n Şeker, Fati̇ma Aerts Kaya
Turkish Journal of Biology
Background/aim: Inflammatory bowel disease (IBD) is characterized by chronic inflammation of the gastrointestinal tract. We hypothesized that the zonulin inhibitor larazotide acetate (LA), designed to regulate loss of tight junctions between intestinal cells and currently used for the treatment of celiac disease, could also have potential therapeutic value in the treatment of IBD.
Materials and methods: BALB/c enteroids were exposed to dextran sulfate sodium (DSS), tumor necrosis factor-alpha (TNFα), or interferon-gamma (IFNγ) for 48 h to induce an IBD-like environment, followed by treatment with LA. Organoids were assessed for intestinal permeability, viability, and expression of the zonulin (Hp), occludin (Ocln), …
Targeting Mitochondrial And Inflammatory Pathways In Abdominal Aortic Aneurysm: Discovery Of Sigma-1 And Ppar-Γ Agonists Through Plasma Microrna Profiling, Defne Çiğ Kabakcioğlu, İrem Peker Eyüboğlu, Medi̇ Kori̇, Fatma Betül Çeli̇k, Semra Meli̇s Soyer, Mustafa Çalişkan, Can Erzi̇k, Kazim Yalçin Arga, Ceyda Kasavi̇
Targeting Mitochondrial And Inflammatory Pathways In Abdominal Aortic Aneurysm: Discovery Of Sigma-1 And Ppar-Γ Agonists Through Plasma Microrna Profiling, Defne Çiğ Kabakcioğlu, İrem Peker Eyüboğlu, Medi̇ Kori̇, Fatma Betül Çeli̇k, Semra Meli̇s Soyer, Mustafa Çalişkan, Can Erzi̇k, Kazim Yalçin Arga, Ceyda Kasavi̇
Turkish Journal of Biology
Background/aim: Abdominal aortic aneurysm (AAA) is a life-threatening vascular disease marked by progressive aortic dilation, high rupture-associated mortality, and a complete lack of effective pharmacological therapies. Because microRNAs (miRNAs) are key regulators of vascular inflammation, extracellular matrix remodeling, and smooth muscle cell function, they represent highly promising therapeutic targets. The aim of this study was to employ an integrative systems biology framework to identify novel miRNA-drug regulatory axes for AAA intervention.
Materials and methods: AAA transcriptome data were integrated with experimentally validated miRNA–mRNA interactions to prioritize candidate miRNAs. A total of 22 previously unreported miRNAs were selected for further analysis. …
Resveratrol Modulates Oxidative Stress-Associated Responses And Restores Keratinocyte Migration Following Lps-Induced Inflammatory Injury, Şeyma Dümür, Burcu Bi̇lteki̇n, Hafi̇ze Uzun
Resveratrol Modulates Oxidative Stress-Associated Responses And Restores Keratinocyte Migration Following Lps-Induced Inflammatory Injury, Şeyma Dümür, Burcu Bi̇lteki̇n, Hafi̇ze Uzun
Turkish Journal of Biology
Background/aim: Persistent inflammation disrupts keratinocyte migration and contributes to delayed wound healing. Lipopolysaccharide (LPS)-induced inflammatory models are widely used to investigate impaired reepithelialization and inflammatory cellular dysfunction. Resveratrol, a naturally occurring polyphenolic compound, exhibits antiinflammatory and antioxidant properties; however, its therapeutic effects on established inflammatory dysfunction remain insufficiently characterized. This study investigates the effects of resveratrol on LPS-induced keratinocyte dysfunction and compares them with those of boric acid (BA) under inflammatory conditions.
Methods: Human HaCaT keratinocytes were exposed to 10 μg/mL LPS to establish an inflammatory microenvironment. Following LPS pretreatment, the cells were treated with resveratrol (2, 5, or 10 …
Retraction Notice To “Characterization Of Tfiie-Regulated Genes By Transcriptome Analysis” [Turkish Journal Of Biology, Volume 48, Issue 6, Pages 442–455,Https://Doi.Org/10.55730/1300-0152.2718], Serdar Baysal
Turkish Journal of Biology
This article has been retracted.
Following concerns raised after publication, the matter was referred to the TÜBİTAK Committee on Research and Publication Ethics (AYEK) for investigation. An Expression of Concern was published while the investigation was ongoing; it was published in the Turkish Journal of Biology, Volume 49, Issue 3, https://journals.tubitak.gov.tr/biology/vol49/iss3/11/.
The investigation has now been concluded. Based on the findings, the project idea and research design underlying the study were used without appropriate attribution or permission. The investigation also determined that a researcher who had contributed to the intellectual foundation of the work—including the development of the …
Pgcc-Derived Daughter Cells Are Associated With Aggressive Phenotypes In Gastric Cancer, Özlem Türksoy Terzi̇oğlu
Pgcc-Derived Daughter Cells Are Associated With Aggressive Phenotypes In Gastric Cancer, Özlem Türksoy Terzi̇oğlu
Turkish Journal of Biology
Background/aim: Polyploid giant cancer cells (PGCCs) have been implicated in tumor recurrence, therapeutic resistance, and cellular plasticity; however, the biological properties of PGCC-derived daughter cells (PGCC-DCs) in gastric cancer remain poorly understood. The present study aimed to evaluate the molecular and functional characteristics of these progeny cells in a gastric cancer model.
Methods: The PGCCs were induced in HGC-27 gastric cancer cells using cobalt(II) chlorideCoCl2-mediated hypoxic stress and enriched by size-based filtration. The PGCC-DCs were isolated through single-cell culture and characterized using molecular and functional assays. Clinical assessments of the cellular parameters were conducted by comparing the PGCC-DCs with parental …