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Localization Of Microcalcification On The Mammogram Using Deep Convolutional Neural Network, Jieun Jhang

Electronic Theses and Dissertations

Breast cancer is the most common cancer in women worldwide, and the mammogram is the most widely used screening technique for breast cancer. To make a diagnosis in the early stage of breast cancer, the appearance of masses and microcalcifications on the mammogram are two crucial indicators. Notably, the early detection of malignant microcalcifications can facilitate the diagnosis and the treatment of breast cancer at the appropriate time. Making an accurate evaluation on microcalcifications is a timeconsuming and challenging task for the radiologists due to the small size and the low contrast of microcalcification. Compared to the background and mammogram …

Impacts Of Diverse Crop Rotations And Integrated Crop-Livestock System On Soil Quality In South Dakota, Atilla Polat

Electronic Theses and Dissertations

Crop diversification can be beneficial in improving soil quality parameters. Diverse crop rotations and integrated crop-livestock systems (ICLS), are two examples of crop diversification used in this study to assess soil quality. The objectives of this study were to: (i) assess the impacts of diverse rotations on soil quality parameters, and (ii) assess the impacts of low and high stocking density on soil quality parameters. Both of the studies were conducted separately and are presented as two different chapters. To accomplish objective (i), a long-term experiment was selected which was established near Brookings, South Dakota, USA at USDA-ARS lab in …

Soybean Iron Deficiency Chlorosis: Quantitative Trait Locus Validation And Grain Yield Evaluation, Ahmed Charif

Electronic Theses and Dissertations

Soybean production in most of the Northern Great Plain area has been challenged by iron deficiency chlorosis (IDC), which is a physiological problem with a plant grown in high pH, calcareous soil. Developing IDC-resistant cultivars is the best approach to meet this challenge. Currently, this approach is limited by lack of knowledge about genetic resources and mechanisms for resistance to IDC. The objectives of this research were to validate quantitative trait loci (QTL) associated with IDC and to evaluate the effect of IDC on yield in soybean cultivars. To validate the QTL, a population of 201 recombinant inbred lines, which …

Case Report: A Novel Ocular Screening Aid For Detection Of Sport-Related Concussion In High School Athletes, Payton Monson

Electronic Theses and Dissertations

Objective: The purpose of this study was to develop, implement and determine the general effectiveness of a novel battery of ocular tests referred to as the Rapid Ocular Screening Test (ROST) that can be performed efficiently on the sideline and is based on our current understanding of the physiological effects of blunt head trauma on ocular functioning.
Background: Assessment of ocular function following a suspected head-injury has been recognized as an important adjunct to a concussion evaluation protocol; however, sideline-screening recommendations currently do not include a comprehensive set of ocular functioning tests. Three high school student athletes who suffered a …

Evaluation Of An Essential Oil Blend And A Novel Soybean Variety As Alternatives To Preventative Antibiotic Use In Monogastrics, Samantha Tauer

Electronic Theses and Dissertations

Increasing consumer pressure to minimize antibiotic use and the implementation of the Veterinary Feed Directive in 2017 has increased research on alternatives to preventative antibiotics. This thesis focuses on evaluation of Ralco’s Microfused™ Essential Oils (MEO) fed to broilers and soybean meal from low allergenicity soybeans fed to weaned pigs and their potential use as alternatives to antibiotics. Essential oils are known to have antimicrobial, antioxidant, antiparasitic, and digestive stimulant effects. Low allergenicity (LA) soybeans were bred to contain significantly lower concentrations of the following anti-nutritional factors and allergenic proteins: Kunitz trypsin inhibitor, soybean agglutinin (lectin), and P34 (Gly m …

Stability Analysis Of Immunogenic Gliadin Accumulation In Hard Red Spring Wheat (Triticum Aestivum L.), Stacy Lindblom-Dreis

Electronic Theses and Dissertations

Misconceptions regarding plant breeding objectives have led to speculation regarding the increasing prevalence of gluten intolerance, wheat allergy, and celiac disease. It is thought that contemporary wheat cultivars accumulate more immunogenic proteins than older cultivars because of supposed genetic changes effected through plant breeding strategies. This study evaluated the stability of gliadin accumulation in 191 hard red spring wheat cultivars grown in 12 location-years. Two enzyme-linked immunosorbent assays (ELISAs) were developed. A paired t test (N = 34) failed to find a statistically significant difference between the experimental ELISAs and the commercial R5 assay measures of mean gliadin (t = …

Urban Gardens And Nutrition In Sioux Falls, Sd, Austin Brynjulson

Electronic Theses and Dissertations

With the global population recently surpassing seven and a half billion, questions about feeding the population have emerged. In the past, increased demand for food was addressed through increasing intensification of land use and increasing the area of land under cultivation. Despite these efforts, food insecurity has increased for much of the population over this period, where, according to the USDA, in the U.S. 49.1 million people were food insecure in 2013. Food insecurity in this regard is the lack of access to sufficient, safe, and nutritious food at all times. While the complex global food system may be difficult …

The Role Of Genomic Versatility In Multi-Niche Preferences Of Escherichia Coli, Gitanjali Nandakafle

Electronic Theses and Dissertations

Escherichia coli strains are naturally present as either commensals or pathogens in the gastrointestinal tract of mammals and some other vertebrates. Until recently, it was assumed that E. coli are solely associated with the gut and are unable to survive outside of a host for a long period of time, the basis of its use as an indicator organism. Recent reports suggest that E. coli can become naturalized to several tropical, subtropical or temperate soils and aquatic environments, where they have been isolated repeatedly. Several studies have shown that these strains are capable of surviving and proliferating in the environment …

Soybean Aphid Biotype 4 Resistance In Soja And Soybean Plant Introductions, Sophia R. Conzemius

Electronic Theses and Dissertations

Soybean aphid, Aphis glycines Matsumura, is a major pest to soybean, Glycine max (L.) Merr. Host plant resistance is a management tactic that uses naturally occurring soybean plant defenses to limit soybean aphid pest damage. Virulent soybean aphid biotypes are able to successfully colonize on certain aphid resistant soybean. Soybean aphid biotype 4 is most virulent, overcoming all commercially available soybean aphid resistant soybeans (Rag1, Rag2, and Rag1+Rag2). Additional sources of resistance to avirulent biotypes have been identified in soja and soybean plant introductions (PIs). This study examined those resistant soja and soybean for resistance to the newly found soybean …

Determinants Of Tipping Behavior: Evidence From Us Restaurants, Nusrat Jahan

Electronic Theses and Dissertations

This study aims to analyze people’s tipping behavior to assess the factors that determine both the likelihood of leaving a tip and tip size in US restaurants. A total 2,334 away from home eating events are considered in this study based on the nationally representative National Household Food Acquisition and Purchase Survey (FoodAPS) dataset. Two different tipping scenarios are considered for full-service restaurants to examine differences in customers’ behavior under two different situations. Considering that households’ tipping decisions and tip sizes are functions of the demand for personal interest (D"#, ) and the demand for social interest (D&#), different socio-demographic, …

A Study Of African Savanna Vegetation Structure, Patterning, And Change, Christoffer R. Axelsson

Electronic Theses and Dissertations

African savannas cover roughly half of the continent, are home to a great diversity of wildlife, and provide ecosystem services to large populations. Savannas showcase a great diversity in vegetation structure, resulting from variation in climatic, edaphic, topographic, and biological factors. Fires play a large role as savannas are the most frequently burned ecosystems on Earth. To study how savanna vegetation structure shifts with environmental factors, it is necessary to gather site data covering the full gradient of climatic and edaphic conditions. Several earlier studies have used coarse resolution satellite remote sensing data to study variation in woody cover. These …

Microbial Communities And Their Impact On Bioenergy Crops In Dynamic Environments, Brandon Monier

Electronic Theses and Dissertations

Native perennial grasses, such as prairie cordgrass (PCG, Spartina pectinata Link), and switchgrass (SG, Panicum virgatum L.) have a great potential as bioenergy crops, because they require fewer inputs, produce more energy, and reduce greenhouse gas emissions in comparison to annual cropping systems such as corn and soybean. SG has been selected by the U.S. Department of Energy for development as bioenergy crop, but studies have shown that PCG can outcompete switchgrass in terms of biomass production. These crops can also form associations with a wide variety of plant growth promoting microbes including arbuscular mycorrhial (AM) fungi. In CHAPTER 2, …

Evaluation Of Berberine As An Alternative To Antibiotics In Nursery Pig Diets, Emily Scholtz

Electronic Theses and Dissertations

Pig weaning process results in reduced growth performance and gut health of weaned pigs. Antibiotics can be added in diets for weaned pigs to improve growth performance and gut health, but their use is being discouraged because they can lead to development of antimicrobial resistant microorganisms. Thus, there is need for alternatives to antibiotics in diets for weaned pigs. The overall goal of this thesis research was to determine the effects of plant extracts (berberine, quercetin, and allyl isothiocyante [AITC]) as alternatives to antibiotics in weaned pig diets. The first objective of the research was to determine in vitro antimicrobial …

What Is The Value Of Corn Residue To Grazing Cattle?, Emily Ann Petzel

Electronic Theses and Dissertations

The United States produces over 370,840,000,000 kg of corn grain and concomitantly more than 303,410,000,000 kg DM of non-grain corn residues (i.e., leaves, husks and stalk) from grain production annually. Although there is an abundance of available corn residue, only 12% of land planted to corn is grazed after harvest (Schmer, 2017), and based on current estimates of nutrient composition (NASEM, 2016), while 30% of available corn residues could maintain the entire United States cow herd. Grazing cattle often select diets with greater nutrient density and digestibility in comparison to the overall biomass available; however, most estimates of nutrient density …

Evaluation Of Microbially-Converted Soybean Meal As An Alternative To Fishmeal In Weaned Pig Diets, Sue Sinn

Electronic Theses and Dissertations

Digestibility values determined in growing pigs may not apply to nursery pigs; thus, standardized ileal digestibility (SID) of AA in MCSBM and fishmeal (FM) were determined using 30 ± 1.6 kg BW ileal-cannulated barrows (n = 6) and 9.8 ± 1.2 kg BW barrows (n = 37; serial slaughter). Experimental diets included MCSBM, FM, and nitrogen-free where FM and MCSBM were included as the sole protein source. The SID of AA was 3-5% lower in MCSBM than FM when fed to 30 kg pigs. The SID of Arg and Met was greater (P < 0.05) in MCSBM than FM when fed to 10 kg pigs. The SID of AA was 12-20% lower in FM when fed to 10 versus 30 kg pigs but only 3-9% lower in MCSBM. A total of 336 barrows and gilts were weaned at 21 d of age (initial BW 6.1 ± 0.8 kg) and used in a performance trial. Pens of pigs were assigned to one of 6 experimental diets (8 pens/diet in two blocks). Treatment diets were fed in Phase I (7 d) and Phase II (14 d) with all pigs fed a common Phase III diet (14 d). Experimental diets included: 1) negative control (NEG) containing corn, soybean meal and whey, 2) NEG + acidifier (NEGA), 3) NEG + FM (POS), 4) POS + acidifier (POSA), 5) NEG + MCSBM (MCSBM), and 6) MCSBM + acidifier (MCSBMA). The FM and MCSBM were included at 7.5% and 5.0% in Phase I and II diets, respectively. Diets were formulated to meet the standard nutrient requirements for weaned pigs. Pig BW and feed disappearance was measured weekly and fecal scores were measured daily for the first 14 d postweaning as an indicator of PWDS. Performance (BW, ADG, ADFI, and G/F) was not significantly different among treatments. Treatment for PWDS occurred on different days in each block. Analysis of fecal score was completed separately by block. Pigs fed the NEG diets had higher (P = 0.02) fecal scores than pigs fed the POS diets on d 2 and 3 (block 1) and higher (P < 0.05) than pigs fed MCSBM or POS diets and diets with dietary acidifier on d 6 and 3 (block 2). At the end of Phase I and II, one pig/pen was humanely euthanized for digesta and tissue collection. Digesta pH was measured in the pyloric region of the stomach, duodenum, middle jejunum, ileum, cecum, and middle colon. There was an effect of location (P < 0.0001), where the pH was lowest in the stomach and increased until the ileum with a slight dip in the cecum and increased in the colon. There was no effect of ingredient, dietary acid, or their interaction within the gastrointestinal tract. At the end of Phase I, pigs fed NEG and POSA diets had similar pH (P > 0.10) from the stomach to the duodenum, …

Southeast South Dakota Experiment Farm Annual Progress Report: 2018, Southeast South Dakota Research Farm

Agricultural Experiment Station and Research Farm Annual Reports

Introduction by Pete Sexton, Farm Supervisor.

This report provides summaries of most of the research trials done at the SDSU Southeast Research Farm in 2018. The overall objective of the farm is to contribute to the public welfare for folks in southeast South Dakota by conducting unbiased agricultural research. The farm’s strategic goals as set by our Farm Board continue to be:

1. Improve character of the soil (soil quality);
2. Achieve grain yield goals and optimize cost of production and profitability;
3. Optimize livestock production including use of novel approaches in integrating livestock and crop production;
4. Increase association membership and improve public …

Aspects Of White-Tailed Deer Ecology And Management: Effects Of Imidacloprid And An Evaluation Of Management At Great Swamp National Wildlife Refuge, Elise Hughes Berheim

Electronic Theses and Dissertations

White-tail deer (Odocoileus virginianus) are an economically and recreationally important species throughout their range, and understanding their ecology to implement beneficial management techniques is invaluable. This thesis focused on two studies 1) the effect of Imidacloprid on adult female and fawn physiology and 2) an evaluation of techniques to monitor white-tailed deer at Great Swamp National Wildlife Refuge (GSNWR). Imidacloprid, a widely-used pesticide, has been linked to lethal and sub-lethal effects in insects and small vertebrates, however, no research has been conducted on white-tailed deer. Twenty captive pregnant adult female and subsequent fawns housed at the South Dakota …

Impacts On Salmonid Rearing Performance With Use Of Dietary Bioprocessed Plant-Based Protein And Water Velocity, Jill Voorhees

Electronic Theses and Dissertations

The inclusion of bioprocessed soybean (Glycine max) meal was evaluated in five experiments using either Rainbow Trout (Oncorhynchus mykiss) or Brown Trout (Salmo trutta). In the first experiment, adult Erwin x Arlee strain Rainbow Trout were fed diets formulated so that bioprocessed soybean meal (BSM) replaced 0, 60, or 80% of the dietary fishmeal. There were no significant differences in gain, percent gain, feed conversion ratio, specific growth rate, intestinal morphology, relative fin lengths, or organosomatic indices. In the second experiment, juvenile Plymouth strain Brown Trout were fed diets formulated so that BSM replaced 0, 60, 80, or 100% of …

Daily Pork Consumption As A Part Of The Dietary Approaches To Stop Hypertension Diet Influences Body Composition And Preserves Muscle Mass In Older Adults Consuming Controlled Intakes, Alyssa Anne Kauffman

Electronic Theses and Dissertations

The purpose of this study was to test the hypothesis that muscular fitness is preserved in older adults who consumed pork daily as a part of the DASH dietary pattern. A controlled feeding pilot study was used to test this. Eight healthy older men and women were randomly assigned to consume either 3 ounces or 6 ounces of pork daily as a part of the DASH diet for a total of 12 weeks. Indicators of muscle mass, strength, and function were assessed at five time points (weeks 0, 3, 6, 9, 12) throughout the 12 weeks. A seven day cyclical …

Identification Of Qtl Modifying The Activity Of The Tcb1-S Locus And Characterization And Sequencing Of Two Plutonium-Beryllium Induced Reduced Gametophyte Transmission Mutants In Maize, Merritt Bryer Burch

Electronic Theses and Dissertations

This thesis is split into two independent projects both involving the male gametophyte generation of maize. The first project looks at how pollen interacts with the female gametophyte to reduce its transmission in cross-incompatible reactions controlled by the unilateral cross-incompatibility system, teosinte crossing barrier 1. The second project explores two plutonium-beryllium induced male gametophyte mutants and attempts to uncover their genetic basis.

Identification of QTL Modifying the Activity of the Tcb1-s Locus
Teosinte crossing barrier 1 (Tcb1) is a unilateral cross-incompatibility system present in maize that provides a pre-zygotic pistil barrier to plants carrying Tcb1-s (strong allele) from pollen …

Effects Of Yogurt Fortification With Different Legumes Protein On The Physio-Chemical, Microbiological, And Rheological Properties, Prachi Pahariya

Electronic Theses and Dissertations

Nowadays, yogurt (a nutritious fermented dairy product) is getting popular around all over the world due to beneficial action provided by bacteria present in yogurt culture. Along with that, diet plans, which are high in protein and low in fat, has become appealing for growing healthy conscious population that makes a huge shift toward plantbased protein consumption. Therefore, the main objective of this research was to study the effects of yogurt fortification with extracted protein of different beans (legumes)- pinto and kidney beans on the physio-chemical (Moisture, Fat, Protein, Ash, Total Solids Content (TSC), pH, Titratable Acidity (TA), Water Holding …

A Longitudinal Examination Of Eating Disorders And Associated Risk Factors In Division I Student-Athletes, Nicole Court-Menendez

Electronic Theses and Dissertations

CONTEXT: Eating disorders represent a significant concern across multiple populations including collegiate athletes. Risk factors for eating disorders may be amplified in athletes because of internal and external performance and image expectations. Little is known about how these risk factors change over time in collegiate student-athletes.
OBJECTIVE: To longitudinally examine select eating disorder risk factors in National Collegiate Athletic Association (NCAA) Division I student-athletes.
DESIGN: Descriptive longitudinal study.
SETTING: NCAA Division I collegiate athletics.
PARTICIPANTS: Retired Division I collegiate athletes (n=204), ages 18-22, who competed in football, women’s soccer, women’s volleyball, baseball, men’s and women’s track and field, men’s and …

Mild Traumatic Brain Injuries And Cte: A Review Highlighting The Connection Between The Two, Leandre Kennedy

Biology and Microbiology Graduate Students Plan B Research Projects

Chronic Traumatic Encephalopathy (CTE) is a traumatic brain injury based disease that is garnering a lot of attention in the United States. The purpose of this paper is to conduct an extensive review of the information available about the condition. Recently there has been a limited amount of published information and treatment opportunities are rare since the only way of diagnosing has come post mortem. Various literary reviews and experiments were analyzed for appropriate information regarding CTE’s pathology and treatments and only peer reviewed published works were allowed in this paper. This resulted in promising information about the disease and …

Qualitative Analysis Of Grocery Store And Farmers Market Manager Perceptions Regarding Use Of Fruit And Vegetable Educational Materials, Lacey Mccormack, Shelly Brandenburger, Karlys Wells, Suzanne Stluka

Health and Nutritional Sciences Faculty Publications

The Pick it! Try it! Like it! (PTL) educational resource set, developed to display in grocery stores and farmers markets, teaches individuals how to shop for and prepare healthy fruit and vegetable dishes. Because program buy-in must be obtained from location managers before implementation occurs, the purpose of this study was to qualitatively examine the perceptions that grocery store and farmers market managers have regarding PTL implementation. Locations that requested PTL materials during 2013-14 were contacted and asked to answer 13 questions. Responses were analyzed using the content analysis method with themes generated and frequencies reported. Analyses examined manager perceptions …

Using “Photovoice” To Identify Rural Community Food Issues, Lisa Franzen-Castle, Tara Shafrath, Lindsay Moore, Ann Schwader, Daniel T. Remley, Suzanne Stluka

Health and Nutritional Sciences Faculty Publications

Rural communities experience unique barriers to food security. Developing food policy councils (FPCs) is a systematic approach to address food security. FPCs bring together a diverse network of community stakeholders to address local food system strengths and concerns. A six-state team developed new or provided support to existing FPCs in rural communities. Photovoice is a project component used to engage youths, helped identify community food issues, such as food access and affordability in studied communities. Furthermore, it was meant to engage FPCs in meaningful dialogue to identify solutions, such as community gardens and work with local food pantries. Because of …

Evaluation Of Tannins And Anthocyanins In Marquette, Frontenac, And St. Croix Cold-Hardy Grape Cultivars, Somchai Rice, Jacek A. Koziel, Murlidhar Dharmadhikari, Anne Fennell

Agronomy, Horticulture and Plant Science Faculty Publications

Cold-hardy grape cultivars have become popular in northern regions. Wines from these cultivars are low in tannins and lighter in color compared to Vitis vinifera. The northern regions are striving to enhance desired ″full body″ and red color qualities in the wine produced from cold-hardy grapes. The objective of this study was to compare tannin and pigment content in skins and seeds of three cold-hardy red grape cultivars, at two time points, from two locations, using the Adams-Harbertson (A-H) assay. The A-H assay is based on protein precipitation and spectrophotometry. Total tannin concentrations detected in Frontenac, Marquette, and St. Croix …

Rapid And Simultaneous Determination Of Nutritional Constituents Of United States Grown Oats Using Near Infrared Reflectance Spectroscopy (Nirs), Devendra Paudel

Electronic Theses and Dissertations

Oats is a unique cereal owing to its nutritional and health benefits. Near Infrared Reflectance Spectroscopy (NIRS) is an efficient tool for monitoring the quality of cereal foods. NIRS holds potential for non-destructive multicomponent oat analyses with advantage of large sample throughput, speed, and reduced cost. The purpose of this study was to develop predictive calibration models for estimating beta-glucan, protein, and oil content of US oat cultivars using NIRS and validated AACCI reference methods. A rapid, non-destructive (whole oat groat), and secondary NIRS method was developed to estimate beta-glucan, protein, and oil content based on the standard reference analyses …

Pilot Study: Knowledge And Attitudes Regarding Sport-Related Concussion In A Rural Interscholastic Sport Sample, Austin Westland

Electronic Theses and Dissertations

Context: Evidence supports education initiatives to improve knowledge of sport-related concussion (SRC) in active children and adolescents, as well as improve attitudes towards reporting concussion events to a supervising adult with the ultimate goal of early diagnosis and management. Most evidence focuses on urban and suburban children’s SRC knowledge and attitudes; however, little is known regarding knowledge and attitudes of children participating in sport in rural environments. Understanding current knowledge and attitudes of rural children can inform future education and health behavior strategies that encourage early reporting. Objective: Two objectives guided this study. First, obtain and analyze pilot data regarding …

Exploring The Relationship Between Quality Of Written School Wellness Policy And The Degree Of Wellness Policy Implementation In Elementary Schools, Josie Sieberg

Electronic Theses and Dissertations

Background: To date many studies have evaluated the quality of written school wellness policies (SWPs), however, few have addresses SWP implementation. As SWPs have the potential to reduce childhood obesity, it is crucial for schools to not only write high quality SWPs, but also to implement these policy items. Purpose: The purpose of this study was to assess the relationship between the quality of written SWPs and the degree of SWP implementation. We hypothesized that schools with higher quality written SWPs would have a higher degree of policy implementation. Methods: School wellness policy written quality and implementation were assessed in …

Differences In Walking Mechanics Between A Traditional Walker And The Kb Balance Trainer, Silvia Zanini

Electronic Theses and Dissertations

INTRODUCTION: Millions of individuals with ambulatory difficulties rely on walking aids to maintain independence and mobility. However, users of traditional walkers typically exhibit increased forward lean of their trunk while using the assistive device. The KB Balance Trainer is a new posterior walker designed to facilitate a more erect position during gait. PURPOSE: To compare gait mechanics across three walking conditions: unassisted, using a traditional walker, and using the KB Balance Trainer. METHODS: Seven adults with experience using walkers due to ambulatory difficulties participated in the study. The study consisted of one training session and one gait analysis session. The …