Digital Commons Network^™

Quantifying Variability In Oculomotor And Manual Choice Response Times, Angelica Godinez

Master's Theses

Response times (RTs) of various motor systems have traditionally been used to characterize aspects of human performance (e.g., fatigue, disease states). However, the properties and sensitivity of different motor systems to detect changes in neural states across multiple timescales remain an open question. In this thesis, we attempt to characterize the difference in sensitivity of the pursuit, saccadic, and manual systems to detect changes in stimulus strength. In Experiment 1, we used a modified Yes-No task to test the effects of contrast (5, 10, 20, 40, 80, 100%) on three pursuit, saccadic, and manual RT’s for three observers. In Experiment …

Screening Bioactive Molecules In Tetrahymena Thermophila Using Phagocytosis Determined By Flow Cytometry, Santosh Gummidipundi

Master's Theses

The evaluation of molecules that have potentially bioactive significance is an expanding field, but current screening assays are expensive and time consuming. Mammalian cell-based assays require aseptic techniques, complex media and long generation times. This thesis reports on an assay that incorporates Tetrahymena phagocytic ingestion and flow cytometry to evaluate several potentially bioactive molecules. Several factors that influenced optimal and reproducible results were analyzed. Seven potentially bioactive molecules (serotonin, norepinephrine, dopamine, morphine, colchicine, mexiletine and procainamide) were evaluated to determine their effect on phagocytosis by Tetrahymena. Assay results indicated that the phagocytic rate was unaffected by serotonin, norepinephrine, dopamine, and …

Complex Effects Of Nitrogen Pollution And Grazing On Nectar Resources Of The Adult Bay Checkerspot Butterfly (Euphydryas Editha Bayensis), Nidhi Jain

Master's Theses

Recent anthropogenic increases in atmospheric nitrogen due to urbanization and combustion have had many adverse effects on natural systems, including loss of biodiversity, especially in sensitive habitats. One such region is the serpentine ecosystem of Coyote Ridge in San Jose, CA, the last refuge for recurring populations of the federally threatened Bay Checkerspot Butterfly (BCB) (Euphydryas editha bayensis). Increases in non-native grass cover and decreases in native forb cover (including cover of the BCB’s native larval host plants) have been attributed to the fertilizing effects of increased atmospheric nitrogen deposition. To counteract this effect, grazing has been implemented as a …

Mitochondrial Dysfunction And Lipid Metabolism Play A Major Role In The Lethality Caused By Developmental Alcohol Exposure, Payam Khodabakhshi

Master's Theses

Exposure to ethanol during development causes a variety of physical, developmental, and cognitive abnormalities. In humans, these symptoms are referred to as fetal alcohol syndrome (FAS) or fetal alcohol spectrum disorder (FASD). Previously, we established a Drosophila melanogaster model of FASD and showed that developmental ethanol exposure causes oxidative stress, and that this is a primary cause of the developmental lethality and delay associated with ethanol exposure. In this study, we investigate the role of fatty acid metabolism and lipid accumulation in connection to FASD. Here, we show that developmental ethanol exposure leads to dysregulation of fatty acid metabolism and …

Sex Role Type As A Predictor Of Gender Stereotype Use In The Evaluation Of Others: Does Being Atypical Preclude Sex Typing Of Others?, Jennifer L. Miller

Master's Theses

The purpose of this investigation was to see if sex role adherence could be used to predict gender stereotype use when viewing children. This was tested using a conceptual replication of an influential gender label study by Condry and Condry in which participants viewed a video of a baby crying in response to a startling event. Contrary to the Condry findings, this study found that participant perception of why a baby was crying was not consistent with the gender label given (consistent, being angry for the boy label and fearful for the girl label). Participant ratings did not vary significantly …

Synthesis, Structural Characterization And Chromatographic Evaluation Of Silica Hydride-Based Perfluorinated Stationary Phase, Harshada Suyog Natekar

Master's Theses

Silica hydride based stationary phases have demonstrated unique selectivity and specificity for small sized polar molecules. The weakly hydrophobic nature of silica hydride is thought to be the key reason for its remarkable retention capabilities. Traditional stationary phases bonded with fluorine moieties have also exhibited enhanced retention of small polar molecules. In this research, a perfluorinated silica hydride stationary phase was synthesized by hydrosilation and silanization procedures. Chromatographic characterization of the newly packed column was carried out by a large number of retention studies. The separation capabilities of the column were evaluated in both the aqueous normal-phase (ANP) and reversed-phase …

Geographic Variation In The Life History And Morphology Of The Pacific Geoduck, Panopea Generosa, Gabriela Navas

Master's Theses

The Pacific geoduck, Panopea generosa, is an ideal candidate to investigate patterns of life history variation and morphological plasticity in shell shape, as it occurs over a large geographic range, inhabits different marine environments, and experiences intense fishing pressure in some locations (i.e., Mexico and Washington). Six populations were sampled from Washington to Mexico to evaluate evidence for geographic variation in demography, life history, and morphology. Results provided evidence for a latitudinal cline with larger clams occurring in locations characterized by colder water temperature. Age structure and longevity analyses indicated that life expectancy was significantly lowered at intertidal sites compared …

Factors Affecting Western Snowy Plover Winter Foraging Habitat Selection In San Francisco Bay Ponds, Benjamin Gabriel Pearl

Master's Theses

Within the San Francisco Bay Area, Western Snowy Plovers (Alexandrinus

nivosus nivosus) nest and winter in former salt ponds. They face a number of threats

including human-altered habitats and high levels of predation by mesopredators and

raptors. The South Bay Salt Pond Restoration Project (the Project) is a large wetland

restoration project that will change and potentially eliminate snowy plover habitat in the

region. As the Project returns salt ponds to tidal wetland, there will be less of the dry,

flat, and sparsely vegetated habitat that plovers need for breeding and wintering habitat.

A greater understanding of the specific microhabitat …

Chloroflexi: The Tale Of A Bacterium Present In Human And Environmental Habitats, Jayashree Sanjeeviraman

Master's Theses

The phylum Chloroflexi is relatively unexplored, with the majority of its representatives being uncultivable. As a result, these microorganisms have not been characterized beyond their morphology and simple staining reactions, making the study of this phylum extremely challenging. Chloroflexi has been detected in the human oral cavity of patients suffering from peri-implantitis and in the vagina of patients suffering from bacterial vaginosis. Interestingly, Chloroflexi is also present in various environments such as freshwater lakes, soil, deep-sea sponges, hot springs and activated wastewater. Isolation of an environmental Chloroflexi with high 16S rRNA gene homology to a human-associated counterpart could be used …

The Role Of Nitric Oxide In Skeletal Simulated Microgravity Response, Luan Tran

Master's Theses

Prolonged exposure to the space environment leads to bone loss. Using a ground-based model for microgravity (hind-limb unloading), it has been shown in rodents that proliferation and differentiation activity of osteoprogenitors are decreased with exposure to simulated microgravity (Kostenuik et al., 1997). Osteoblast mineralization activity has been shown to increase with nitric oxide supplementation (Afzal et al., 2004; Koyama et al., 2000). I hypothesized that the degenerative effects of microgravity exposure result from chronic changes in nitric oxide regulation in osteoprogenitors, and that supplementation with exogenous nitric oxide following exposure would ameliorate these changes. In 20 C57Bl/6 mice, hind-limb unloading …

Effects Of Small-Scale Substrate Complexity And Heterogeneity On Rocky Intertidal Species Interactions, Sara E. Worden

Master's Theses

The barnacle assemblage in the high rocky intertidal zone has provided an excellent study system to examine species interaction webs. This assemblage consists of a small set of species: barnacles, a variety of macroalgae, and a suite of limpet grazers. Despite the extensive intertidal research occurring along the central California coast, little is known about this specific interaction web and what physical factors may influence it in this region. This study examines the direct, indirect, positive, and negative interactions between the intertidal barnacle Balanus glandula Darwin, the brown seaweed Pelvetiopsis limitata Gardner, and limpet grazers, and how the underlying rock …

High-Speed Rail And Equine Issues, Peter J. Haas, Allie Scrivener

Mineta Transportation Institute

Community concerns have been raised about the possible negative impacts of high-speed rail (HSR) service on equestrian areas. Although much is known about the impact of aircraft noise on wild and domestic animals, relatively little information is available on the potential impact of HSR service on equine populations. This study will explore possible conflicts between HSR construction and operations in areas used for equestrian ranching, recreation, and related activities, and identify geographic areas where such conflicts could occur.

Assessment Of Library Registration Between Fresh And Returning Undergraduate Students Of The Federal University Of Agriculture, Abeokuta, Nigeria, Fehintola Nike Onifade, Adeniyi Sowole, Taiwo Aderonke Idowu

Library Philosophy and Practice (e-journal)

Abstract

The paper examines the rate at which students register with the library by comparing the fresh and the returning undergraduate students in the Federal University of Agriculture, Abeokuta Nigeria. Two hundred and fifty (250) copies of questionnaire were randomly distributed among students in late August, 2015 while two hundred and twenty four (224) copies were returned. Also used as databases for the study are the library statistics of registered students and the University’s student enrolment list for a period of five years starting from 2009/2010 to 2013/2014 academic sessions. The study revealed that fresh undergraduate students registered more than …

Spartan Daily, November 18, 2015, San Jose State University, School Of Journalism And Mass Communications

Spartan Daily (School of Journalism and Mass Communications)

Volume 145, Issue 35

Environmental Temperatures, Artificial Nests, And Incubation Of Cassin's Auklet, Emma Kelsey, Russell Bradley, Pete Warzybok, Jamie Jahncke, Scott A. Shaffer

Faculty Publications, Biological Sciences

Hatching success in birds is influenced by the temperature and turning rate of the egg, but our understanding of the environmental factors that effect incubation temperatures and egg turning rates in birds is limited. Especially little is known of these effects for species that nest in burrows or crevices, such as the Cassin's auklet. On Southeast Farallon Island, California, USA, a subset of the Cassin's auklet (hereafter auklet) population nest in artificial nest boxes. The nest boxes are above ground and made out of a single layer of plywood. Temperatures in unshaded nest boxes can increase significantly with high ambient …

Individual-Level Variation And Higher-Level Interpretations Of Space Use In Wide-Ranging Species: An Albatross Case Study Of Sampling Effects, Sarah Gutowsky, Marty Leonard, Melinda Conners, Scott A. Shaffer, Ian Jonsen

Faculty Publications, Biological Sciences

Marine ecologists and managers need to know the spatial extent of at-sea areas most frequented by the groups of wildlife they study or manage. Defining group-specific ranges and distributions (i.e., space use at the level of species, population, age-class, etc.) can help to identify the source or severity of common or distinct threats among different at-risk groups. In biologging studies, this is accomplished by estimating the space use of a group based on a sample of tracked individuals. A major assumption of these studies is consistency in individual movements among members of a group. The implications of scaling up individual-level …

Scholarly Publications By The Faculty Members Of Periyar University, Salem, India: A Scientometric Approach, Natarajan Radhakrishnan, Chandran Velmurugan

Library Philosophy and Practice (e-journal)

The present study aims to bring out the contributions made by the members of various departments of Periyar University, Salem. Further, it views the impact of the scholarly publications produced from Periyar University in India and the data analyzed for the study were retrieved from Web of Science (WOS) database for a period from 1998 to 2014. The study focuses on publishing trend, authorship pattern, and type of documents, country wise distribution of authors and individual authors’ research publications and their TLCS, TCLS, TLCR and so on.

Influence Of Students' Industrial Work Experience Scheme On Professional Development Of Library And Information Science Students In South-West, Nigeria, Beatrice Yemisi Ojokuku Mrs, Evelyn Nechi Emeahara Mrs, Modupe A. Aboyade Mrs, Helen O. Chris-Israel Mrs

Library Philosophy and Practice (e-journal)

ABSTRACT

This study examines the influence of Students Industrial Work Experience Scheme on Professional Development of Library and Information Science Students in South-West, Nigeria. Descriptive research design was adopted for the study and total enumeration sampling technique was used to select 277 respondents covering three institutions; Adeleke University, Ede Osun state, University of Ibadan, Ibadan and Tai Solarin University of Education, Ijebu Ode, Ogun state. The respondents are students who have gone through student industrial experience scheme. Questionnaire was the instrument used for data collection. Data collected was analysed using descriptive statistics and simple percentages. Findings revealed that majority of …

Body Size Affects Individual Winter Foraging Strategies Of Thick-Billed Murres In The Bering Sea, Rachael Orben, Rosana Paredes, Daniel Roby, David Irons, Scott A. Shaffer

Faculty Publications, Biological Sciences

Foraging and migration often require different energetic and movement strategies. Though not readily apparent, constraints during one phase might influence the foraging strategies observed in another. For marine birds that fly and dive, body size constraints likely present a trade-off between foraging ability and migration as smaller bodies reduce flight costs, whereas larger bodies are advantageous for diving deeper. This study examines individual wintering strategies of deep diving thick-billed murres (Uria lomvia) breeding at three colonies in the south-eastern Bering Sea: St Paul, St George and Bogoslof. These colonies, arranged north to south, are located such that breeding birds forage …

Spartan Daily, October 29, 2015, San Jose State University, School Of Journalism And Mass Communications

Spartan Daily (School of Journalism and Mass Communications)

Volume 145, Issue 29

Spartan Daily, October 22, 2015, San Jose State University, School Of Journalism And Mass Communications

Spartan Daily (School of Journalism and Mass Communications)

Volume 145, Issue 26

Wintering North Pacific Black-Legged Kittiwakes Balance Spatial Flexibility And Consistency, Rachael Orben, Rosana Paredes, Daniel Roby, David Irons, Scott A. Shaffer

Faculty Publications, Biological Sciences

Background Marine environments are inherently dynamic, yet marine predators are often long-lived and employ strategies where consistency, individual specialization, routine migrations, and spatial memory are key components to their foraging and life-history strategies. Intrinsic determinates of animal movements are linked to physiological and life-history traits (e.g. sex, colony, experience), while extrinsic influences occur as the result of an animal’s interactions with either other animals or the environment (e.g. prey availability, weather, competition). Knowledge of the factors affecting animal movements is critical to understand energetic bottlenecks and population dynamics. Here, we attempt to understand the interaction of some of these factors …

Facebook Research: A Scientometric Assessment Of Global Publications, 2005-14, Brij Mohan Gupta Dr, Surinder Mohan Dhawan Dr, Ritu Gupta, Meena Jalana

Library Philosophy and Practice (e-journal)

Abstract: - This study is about scientometric assessment of global literature on Facebook research published during 2005-14. In all 7916 papers were identified on “Facebook Research” from Scopus database covering 10 years period 2005-14. The study analyzed growth of publication data and its distribution by documents type, country of publication, authors, their organizations, and subjects. The study identified most productive countries, organization, authors in Facebook research and determined their global publication share, average productivity and comparative citation impact. The Facebook research registered 98.26%, CAGR growth and registered the citations per paper of 5.59. In overall. A total of 109 countries …

Sjsu Erfa News, Fall 2015, San Jose State University, Emeritus And Retired Faculty Association

Emeritus and Retired Faculty Association (ERFA) Newsletter

Volume 29, Number 1.

Incorrectly labeled as Volume 28, Number 1.

Foraging Behavior Links Climate Variability And Reproduction In North Pacific Albatrosses, Lesley Thorne, Elliott Hazen, Steven Bograd, David Foley, Melinda Conners, Michelle Kappes, Hyemi Kim, Daniel Costa, Yann Tremblay, Scott A. Shaffer

Faculty Publications, Biological Sciences

Background: Climate-driven environmental change in the North Pacific has been well documented, with marked effects on the habitat and foraging behavior of marine predators. However, the mechanistic linkages connecting climate-driven changes in behavior to predator populations are not well understood. We evaluated the effects of climate-driven environmental variability on the reproductive success and foraging behavior of Laysan and Black-footed albatrosses breeding in the Northwest Hawaiian Islands during both brooding and incubating periods. We assessed foraging trip metrics and reproductive success using data collected from 2002–2012 and 1981–2012, respectively, relative to variability in the location of the Transition Zone Chlorophyll Front …

Biv Tar Rna Binding Glycine Mutant Tat Peptides: An Integrated Modeling And Binding Assay Approach, Loc Tien Nguyen

Master's Theses

Interactions between viral encoded regulatory proteins and RNA target sequences control gene expression of Lentiviruses, including human immunodeficiency virus (HIV). Bovine immunodeficiency virus (BIV) provides a simpler model of interaction between the viral trans-activating protein (Tat) and trans-activation response RNA element (TAR), using Tat peptides binding to TAR RNA fragments. The resulting characterization of the hinge region of native BIV TAR-Tat complex was confirmed by more comprehensive calculations, involving an exhaustive generation of lattice chains. This modeled 2-residues per move of the native 11-mer Tat peptide and a 28-nucleotides TAR fragment. But these sorts of coarse-grained calculations, upon substitution of …

A Test Of Educational Methods To Reduce Boating Disturbance To Harbor Seals, Rachel Nicole Solvason

Master's Theses

Environmental education can affect attitudes and behaviors, but determining the most effective methods for protecting wildlife requires research. This study examined the effect of two modes of environmental education, one passive and one active, on the behaviors of boaters toward harbor seals (Phoca vitulina) at Corkscrew Slough in Redwood City, California, an area where harbor seals haul out and pup. Thirty-one boaters viewed an interpretive sign (passive environmental mode) and 30 experienced a docent talk (active) both designed to educate boaters on protecting harbor seals; 31 boaters received no environmental information (the control), therefore were not exposed to the interpretive …

Cryptanalysis Of The Purple Cipher Using Random Restarts, Aparna Shikhare

Master's Projects

Cryptanalysis is the process of trying to analyze ciphers, cipher text, and crypto systems, which may exploit any loopholes or weaknesses in the systems, leading us to an understanding of the key used to encrypt the data. This project uses Expectation Maximization (EM) approach using numerous restarts to attack decipherment problems such as the Purple Cipher. In this research, we perform cryptanalysis of the Purple cipher using genetic algorithms and hidden Markov models (HMM). If the Purple cipher has a fixed plugboard, we show that genetic algorithms are successful in retrieving the plaintext from cipher text with high accuracy. On …

Interactive Phishing Filter, Rushikesh Joshi

Master's Projects

Phishing is one of the prevalent techniques used by attackers to breach security and steal private and confidential information. It has compromised millions of users’ data. Blacklisting websites and heuristic-based methods are common approaches to detect a phishing website. The blacklist method suffers from a window of vulnerability. Many heuristics were proposed in the past. Some of them have better accuracy but a lower performance. A phishing filter should have better accuracy and peformance. It should be able to detect fresh phishing websites. Jo et al. [2] present a list of attributes of the web page to find the disparity …

Neural Network Captcha Cracker, Geetika Garg

Master's Projects

NEURAL NETWORK CAPTCHA CRACKER A CAPTCHA (acronym for "Completely Automated Public Turing test to tell Computers and Humans Apart") is a type of challenge-response test used to determine whether or not a user providing the response is human. In this project, we used a deep neural network framework for CAPTCHA recognition. The core idea of the project is to learn a model that breaks image-based CAPTCHAs. We used convolutional neural networks and recurrent neural networks instead of the conventional methods of CAPTCHA breaking based on segmenting and recognizing a CAPTCHA. Our models consist of two convolutional layers to learn image …