Digital Commons Network^™

Ordering Genetic Algorithm Genomes With Reconstructability Analysis, Stephen Shervais, Martin Zwick

Complex Systems Faculty Publications and Presentations

The building block hypothesis implies that genetic algorithm effectiveness is influenced by the relative location of epistatic genes on the chromosome. We find that this influence exists, but depends on the generation in which it is measured. Early in the search process it may be more effective to have epistatic genes widely separated. Late in the search process, effectiveness is improved when they are close together. The early search effect is weak but still statistically significant; the late search effect is much stronger and plainly visible. We demonstrate both effects with a set of simple problems, and show that infonnation-theoretic …

Modeling Intracranial Fluid Flows And Volumes During Traumatic Brain Injury To Better Understand Pressure Dynamics, Wayne W. Wakeland, James Mcnames, Mateo Aboy, D. Hollemon, Brahm Goldstein

Complex Systems Faculty Publications and Presentations

See additional files below for the Presentation.

We describe a computer model of intracranial pressure (ICP) dynamics that evaluates clinical treatment options for elevated ICP during traumatic brain injury (TBI). The model uses fluid volumes as primary state variables and explicitly models fluid flows as well as the resistance, compliance, and pressure associated with each intra - and extracranial compartment (arteries and arterioles, capillary bed, veins, venous sinus, ventricles, and brain parenchyma). The model evaluates clinical events and therapies such as intra - and extra-parenchymal hemorrhage, cerebral edema, cerebrospinal fluid drainage, mannitol administration, head elevation, and mild hyperventilation. The model …

A Hierarchical Approach To Computer-Aided Design Of Quantum Circuits, Marek Perkowski, Martin Lukac, Pawel Kerntopf, Mikhail Pivtoraiko, Michele Folgheraiter, Yong Woo Choi, Jung-Wook Kim, Dongsoo Lee, Woong Hwangbo, Hyungock Kim

Electrical and Computer Engineering Faculty Publications and Presentations

A new approach to synthesis of permutation class of quantum logic circuits has been proposed in this paper. This approach produces better results than the previous approaches based on classical reversible logic and can be easier tuned to any particular quantum technology such as nuclear magnetic resonance (NMR). First we synthesize a library of permutation (pseudobinary) gates using a Computer-Aided-Design approach that links evolutionary and combinatorics approaches with human experience and creativity. Next the circuit is designed using these gates and standard 1*1 and 2*2 quantum gates and finally the optimizing tautological transforms are applied to the circuit, producing a …

Distress Under Duress: The Relationship Between Campus Climate And Depression In Asian American College Students, Christine M. Cress, Elaine Kimiko Ikeda

Educational Leadership and Policy Faculty Publications and Presentations

Student perceptions of negative campus climate were predictive of Asian American students’ depression levels in spite of students’ entering proclivities toward depression and in spite of varying institutional types. In addition, these findings were consistent whether individual Asian American perceptions of campus climate were entered into the equation or whether institutional levels of campus perceptions (which included all racial and ethnic groups) were entered into the equation. Therefore, higher education institutions that are perceived by students to discriminate against individuals based on race or ethnicity, gender, sexual orientation, or disability may put their Asian American students at risk for severe …

Investigating The Urban Heat Island Effect With A Collaborative Inquiry Project, Linda Acha George, William G. Becker

Environmental Science and Management Faculty Publications and Presentations

Modification of the earth's surface through urbanization can have a dramatic impact on local climate. A phenomenon known as the Urban Heat Island (UHI) effect, which is a measure of the near-surface air temperature contrast between urbanized and adjoining rural areas, can be evaluated with readily available instruments. Students in an undergraduate general education science course study this phenomenon in the Portland, Oregon area through a collaborative research project. This inquiry project includes background content and literature review, preliminary studies, development of research questions, experimental design and implementation, data analysis and report writing. This project successfully enables students to collaboratively …

Source Motion Mitigation For Adaptive Matched Field Processing, Lisa M. Zurk, Nigel Lee, James Ward

Electrical and Computer Engineering Faculty Publications and Presentations

Application of adaptive matched field processing to the problem of detecting quiet targets in shallow water is complicated by source motion, both the motion of the target and the motion of discrete interferers. Target motion causes spreading of the target peak, thereby reducing output signal power. Interferer motion increases the dimensionality of the interference subspace, reducing adaptive interference suppression. This paper presents three techniques that mitigate source motion problems in adaptive matched field processing. The first involves rank reduction, which enables adaptive weight computation over short observation intervals where motion effects are less pronounced. The other two techniques specifically compensate …

The Role Of Lateral And Vertical Shear In Tributary Flow Toward A West Antarctic Ice Stream, Christina L. Hulbe, Weili Wang, Ian R. Joughin, Martin J. Siegert

Geology Faculty Publications and Presentations

Narrow lateral shear margins are the most distinctive visual feature of the West Antarctic ice streams. Large shear stresses within these layers support the majority of the gravitational driving stress within a fast-flowing ice stream.The present contribution looks upstream, to the tributaries that feed ice-stream onsets, and considers the effects of both horizontal and vertical shear on their flow. Numerical and direct simulations of vertical and horizontal shear are used.Vertical shear, simulated using an anisotropic flow law, is of particular interest.We conclude that by isolating overlying ice from large-amplitude variations in bed elevation -vertical shear margins - play an important …

Subglacial Thermal Balance Permits Ongoing Grounding Line Retreat Along The Siple Coast Of West Antarctica, Byron R. Parizek, Richard B. Alley, Christina L. Hulbe

Geology Faculty Publications and Presentations

Changes in the discharge of West Antarctic ice streams are of potential concern with respect to global sea level. The six relatively thin, fast-flowing Ross ice streams are of interest as low-slope end-members among Antarctic ice streams. Extensive research has demonstrated that these "rivers of ice" have a history of relatively high-frequency (óO(100) years), asynchronous discharge variations with evolving lateral boundaries. Amidst this variability, a ~1300 km grounding-line retreat has occurred since the Last GlacialMaximum. Numerical studies of Ice Stream D (Parizek and others, 2002) indicate that a proposed thermal-regulation mechanism(Clarke and Marshall, 1998; Hulbe and MacAyeal,1999; Tulaczyk and others, …

Anisotropic Ice Flow Leading To The Onset Of Ice Stream D, West Antarctica: Numerical Modelling Based On The Observations From Byrd Station Borehole, Weili Wang, H. Jay Zwally, Christina L. Hulbe, Martin J. Siegert, Ian R. Joughin

Geology Faculty Publications and Presentations

An ice-sheet flowline model is used to simulate the flow of ice along two particle paths toward the onset to Ice Stream D,West Antarctica. One path is near the centre line of the main tributary to the ice stream, while the second passes by the Byrd Station borehole site. In this paper, we analyze the flow of the moderately fast-flowing tributaries in terms of ice-fabric anisotropy and estimate the steady-state ice-flow regions with the compatible developed crystal orientation fabrics along two particle paths. Comparison between modelled isochrones and internal layers detected from radio-echo sounding surveys in the area is used …

Comparative Studies Of Evolutionary Responses To Light Environments In Arabidopsis, Massimo Pigliucci, Heidi Pollard, Mitchell B. Cruzan

Biology Faculty Publications and Presentations

In this article, we compare the reaction norms to foliage shade (changes in light quality, spatially fine-grained environmental variation) and photoperiod (day length, spatially coarse-grained environmental variation) in several haplotypes of Arabidopsis thaliana from Scandinavia. We found that both across-environment means and phenotypic plasticities evolved continuously and very rapidly within this group. Both character means and trait plasticities were highly integrated, in part as predicted by the adaptive plasticity hypothesis for response to foliage shade (the so-called shade-avoidance syndrome). We found that a significant but small fraction of the variance in across-treatment trait means and plasticities in response to one …

Under The Plastic: A Quantitative Look At Dvd Video Encoding And Its Impact On Video Modeling, Wu-Chi Feng, Jin Choi, Wu-Chang Feng, Jonathan Walpole

Computer Science Faculty Publications and Presentations

In this paper, we examine the DVD encoding process and the implications this process has video modeling and network traffic analysis. We have assembled a system that allows us to extract the video data from the DVDs as they were encoded for distribution. Analyzing the resulting video trace data, we describe how DVD encodings have evolved over time. In addition, our findings show that the underlying video content is fundamentally different than those produced by basic consumer video capture boards. We demonstrate how this affects current video modeling proposals and their affect on network traffic characterization. This research is based …

Valley Floor Climate Observations From The Mcmurdo Dry Valleys, Antarctica, 1986-2000, Peter T. Doran, Christopher P. Mckay, Gary D. Clow, Gayle L. Dana, Andrew G. Fountain, Thomas H. Nylen, W. Berry Lyons

Geography Faculty Publications and Presentations

Climate observations from the McMurdo dry valleys, East Antarctica are presented from a network of seven valley floor automatic meteorological stations during the period 1986 to 2000. Mean annual temperatures ranged from −14.8°C to −30.0°C, depending on the site and period of measurement. Mean annual relative humidity is generally highest near the coast. Mean annual wind speed increases with proximity to the polar plateau. Site to site variation in mean annual solar flux and PAR is due to exposure of each station and changes over time are likely related to changes in cloudiness. During the non-summer months, strong katabatic winds …

A Performance Study Of Lam And Mpich On An Smp Cluster, Brian Patrick Kearns

Dissertations and Theses

Many universities and research laboratories have developed low cost clusters, built from Commodity-Off-The-Shelf (COTS) components and running mostly free software. Research has shown that these types of systems are well-equipped to handle many problems requiring parallel processing. The primary components of clusters are hardware, networking, and system software. An important system software consideration for clusters is the choice of the message passing library.

MPI (Message Passing Interface) has arguably become the most widely used message passing library on clusters and other parallel architectures, due in part to its existence as a standard. As a standard, MPI is open for anyone …

Report On The Oregon Ballast Water Management Program In 2002, Jordan Vinograd, Mark Sytsma

Center for Lakes and Reservoirs Publications and Presentations

This report documents the efficacy of the first ten months of the Oregon Ballast Water Management Program, which was established by SB 895 during the 2001 legislative session. The Oregon Ballast Water Management Program was initiated to address the introduction of aquatic nuisance species via discharge of ballast water from ships. The Program reflects the Oregon Legislature’s recognition of the potential for aquatic nuisance species to cause economic and environmental damage to the State. Oregon Laws 2001, Chapter 722 (Appendix A), required that owners and operators of certain vessels entering Oregon waters must report the time and place ballast water …

Upper Spokane River Model: Boundary Conditions And Model Setup, 2001, Spencer Slominski, Robert Leslie Annear, Chris Berger, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

The Washington Department of Ecology is interested in a water quality model for the Upper Spokane River system for use in developing Total Maximum Daily Loads (TMDLs). The goals of this modeling effort are to:

• Gather data to construct a computer simulation model of the Spokane River system including Long Lake Reservoir and the pools behind Nine Mile dam, Upper Falls dam and Upriver dam for 2001 based on the calibration conducted for 1991 and 2000 data sets, (Annear et al, 2001).

• Ensure that the model accurately represents the system hydrodynamics and water quality (flow, temperature, dissolved oxygen …

Multi-Level Decomposition Of Probabilistic Relations, Stanislaw Grygiel, Martin Zwick, Marek Perkowski

Complex Systems Faculty Publications and Presentations

Two methods of decomposition of probabilistic relations are presented in this paper. They consist of splitting relations (blocks) into pairs of smaller blocks related to each other by new variables generated in such a way so as to minimize a cost function which depends on the size and structure of the result. The decomposition is repeated iteratively until a stopping criterion is met. Topology and contents of the resulting structure develop dynamically in the decomposition process and reflect relationships hidden in the data.

Modified Bell-Plesset Effect With Compressibility: Application To Double-Shell Ignition Target Designs, Peter A. Amendt, J. D. Colvin, John D. Ramshaw, H. F. Robey, O. L. Landen

Physics Faculty Publications and Presentations

The effect of spherical convergence on the fluid stability of collapsing and expanding bubbles was originally treated by Bell [Los Alamos Scientific Laboratory Report No. LA-1321 (1951)] and Plesset [J. Appl. Phys. 25, 96 (1954)]. The additional effect of fluid compressibility was also considered by Bell but was limited to the case of nonzero density on only one side of a fluid interface. A more general extension is developed which considers distinct time-dependent uniform densities on both sides of an interface in a spherically converging geometry. A modified form of the velocity potential is used that avoids an unphysical divergence …

Faculty Senate Monthly Packet November 2002, Portland State University Faculty Senate

Faculty Senate Monthly Packets

The November 2002 Monthly packet includes the November agenda and appendices and the Faculty Senate minutes and attachments from the meeting held October 2002.

Nonlocal Electrodynamic Modeling Of Fluorescence Characteristics For Molecules In A Spherical Cavity, Pui T. Leung, M. H. Hider

Physics Faculty Publications and Presentations

The emission characteristics for molecules in a spherical metallic microcavity are computed using a nonlocal electrodynamic model, based on a theory previously published by Fuchs and Claro [Phys. Rev. B 35, 3722 (1987)] for the multipole polarizability of a sphere. Both radially and tangentially oriented molecules at arbitrary locations inside the cavity are considered, and the results are compared with those from both the local response theory and those for molecules outside a spherical particle. The issue of reciprocity of the solutions for each of the sphere and cavity cases, respectively, is examined in the light of the nonlocal effects. …

High Frequency-Bandwidth Optical Technique To Measure Thermal Elongation Time Responses Of Near-Field Scanning Optical Microscopy Probes, Andres H. La Rosa, B. Biehler

Physics Faculty Publications and Presentations

A near-field scanning optical microscopy (NSOM) probe elongates when light is coupled into it. The time response of this thermal process is measured here by a new optical technique that exploits the typical flat-apex morphology of the probe as a mirror in a Fabry-Perot type cavity. Pulsed laser light is coupled into the probe to heat up the tip, while another continuous wave laser serves to monitor the elongation from the interference pattern established by the reflections from the flat-apex probe and a semitransparent metal-coated flat sample. A quarter wave plate is introduced into the interferometer optical path in order …

Tmdls: Statistical Correlations Or Mechanistic Modeling?, Scott A. Wells, Thomas M. Cole

Civil and Environmental Engineering Faculty Publications and Presentations

In developing TMDL waste-load allocations for the Snake River-Reservoir system in Western Idaho and Eastern Oregon, determinations of the assimilative capacity of the system and the impact of pollutant reduction strategies has been performed using both a statistical-correlation approach and a mechanistic modeling approach. The system included the Lower Snake River, Brownlee Reservoir, Oxbow Reservoir, and Hells Canyon Reservoir with the focus was on Brownlee Reservoir.

The statistical approach used on Brownlee Reservoir divided the system into riverine and lacustrine zones. Field data were then averaged over season and location to provide statistical correlations, such as between total phosphorus (TP) …

Conflict Emergence And Escalation In Interactive International Dyads, David Todd Kinsella, Bruce M. Russett

Political Science Faculty Publications and Presentations

We examine whether the conditions affecting initial expressions of hostility are similar to those affecting militarized disputes. Analyzing dyadic interactions during the years 1951–1992, we estimate a model to take into account selection effects and check it against another allowing conjunctive causation. Both provide close approximations to theoretical models of the conflict process and yield similar results. We confirm Kant’s belief that all states are subject to the realist conditions of interstate competition that makes disputes likely, but that liberal influences, if present, can constrain the escalation of such disputes to war. Several influences on the conflict process have nonmonotonic …

Source Localization In A Time-Varying Ocean Waveguide, Cristiano Soares, Martin Siderius, Sérgio M. Jesus

Electrical and Computer Engineering Faculty Publications and Presentations

One of the most stringent impairments in matched-field processing is the impact of missing or erroneous environmental information on the final source location estimate. This problem is known in the literature as model mismatch and is strongly frequency dependent. Another unavoidable factor that contributes to model mismatch is the natural time and spatial variability of the ocean waveguide. As a consequence, most of the experimental results obtained to date focus on short source-receiver ranges (usually <5 >km), stationary sources, reduced time windows and frequencies generally below 600 Hz. This paper shows that MFP source localization can be made robust to time–space …

Faculty Senate Monthly Packet October 2002, Portland State University Faculty Senate

Faculty Senate Monthly Packets

The October 2002 Monthly packet includes the October agenda and appendices and the Faculty Senate minutes and attachments from the meeting held June 2002.

Understory Species Patterns And Diversity In Old-Growth And Managed Northern Hardwood Forests, Robert M. Scheller, David J. Mladenoff

Environmental Science and Management Faculty Publications and Presentations

Forest management can significantly affect both the diversity and spatial patterning of understory vegetation. However, few studies have considered both diversity and spatial patterning at a stand scale. Our objective was to evaluate the effects of forest management on understory plant communities in northern hardwood forests and assess the processes governing differences in species composition, diversity, and spatial patterns. We sampled understory vegetation (all speciestall) and percentage of light transmission levels in three forest types in 12 mesic northern hardwood stands in northern Wisconsin and the Upper Peninsula of Michigan, USA: old-growth, undisturbed forests; even-aged forests resulting from clearcut logging …

Charter Schools In Portland; Resolution In Favor Of Ballot Measure 17, City Club Of Portland (Portland, Or.)

City Club of Portland

No abstract provided.

A New Approach To Robot’S Imitation Of Behaviors By Decomposition Of Multiple-Valued Relations, Uland Wong, Marek Perkowski

Electrical and Computer Engineering Faculty Publications and Presentations

Relation decomposition has been used for FPGA mapping, layout optimization, and data mining. Decision trees are very popular in data mining and robotics. We present relation decomposition as a new general-purpose machine learning method which generalizes the methods of inducing decision trees, decision diagrams and other structures. Relation decomposition can be used in robotics also in place of classical learning methods such as Reinforcement Learning or Artificial Neural Networks. This paper presents an approach to imitation learning based on decomposition. A Head/Hand robot learns simple behaviors using features extracted from computer vision, speech recognition and sensors.

Evolving Quantum Circuits And An Fpga-Based Quantum Computing Emulator, Goran Negovetic, Marek Perkowski, Martin Lukac, Andrzej Buller

Electrical and Computer Engineering Faculty Publications and Presentations

The goal of the PQLG group is to develop complete methodologies, software tools and circuits for quantum logic. Our interests are mainly in logic synthesis for quantum circuits and quantum system design [10]. Emulation of quantum circuits using standard reconfigurable FPGA technology and FPGA-based Evolvable Quantum Hardware, proposed here, are research areas not yet dealt with by other research groups. A parallel software simulator was presented in [13].

The Bull Run River–Reservoir System Model, Robert Leslie Annear, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

The Bull Run watershed is located 41.8 kilometers east of Portland, Oregon in the Mt. Hood National Forest and consists of two reservoirs supplying drinking water to over 840,000 people in the Portland metropolitan area. In March 1998 Steelhead and Spring Chinook were listed as threatened in the Lower Columbia basin under the Endangered Species Act. Historical reservoir operations during the summer released no water downstream resulting in stream temperatures exceeding the state water quality standard for salmonids. CE-QUAL-W2 Version 3 is a two-dimensional water quality and hydrodynamic model capable of modeling watersheds with interconnected rivers, reservoirs and estuaries. CE-QUAL-W2 …

Basis Of The Ce-Qual-W2 Version 3 River Basin Hydrodynamic And Water Quality Model, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

CE-QUAL-W2 Version 3, a 2-D (longitudinal-vertical) hydrodynamic and water quality model for river basins combining both river and stratified river-estuary and lake-reservoir flow, is a development product of the Waterways Experiment Station in Vicksburg, MS, USA. With the development and release of any revised or reformulated model codes, significant model validation is required. This includes comparison of model results to simple analytical solutions for hydrodynamics and water quality transport, as well as comparison to laboratory and field data. In this paper, the model is compared to numerous analytical solutions for mass transport (1- D advective mass transport) and hydrodynamics (impulsive …