Digital Commons Network^™

Crystallographic Education In The 21st Century, Saulius Gražulis, Amy Alexis Sarjeant, Peter Moeck, Jennifer Stone-Sundberg, Trevor J. Snyder, Werner Kaminsky, Allen G. Oliver, Charlotte L. Stern, Louise N. Dawe, Denis A. Rychkov, Evgeniy A. Losev, Elena V. Boldyreva,, Joseph M. Tanski, Joel Bernstein, Wael M. Rabeh, Katherine A. Kantardjieff

Physics Faculty Publications and Presentations

There are many methods that can be used to incorporate concepts of crystallography into the learning experiences of students, whether they are in elementary school, at university or part of the public at large. It is not always critical that those who teach crystallography have immediate access to diffraction equipment to be able to introduce the concepts of symmetry, packing or molecular structure in an age- and audience-appropriate manner. Crystallography can be used as a tool for teaching general chemistry concepts as well as general research techniques without ever having a student determine a crystal structure. Thus, methods for younger …

Computational Capacity And Energy Consumption Of Complex Resistive Switch Networks, Jens Bürger, Alireza Goudarzi, Darko Stefanovic, Christof Teuscher

Electrical and Computer Engineering Faculty Publications and Presentations

Resistive switches are a class of emerging nanoelectronics devices that exhibit a wide variety of switching characteristics closely resembling behaviors of biological synapses. Assembled into random networks, such resistive switches produce emerging behaviors far more complex than that of individual devices. This was previously demonstrated in simulations that exploit information processing within these random networks to solve tasks that require nonlinear computation as well as memory. Physical assemblies of such networks manifest complex spatial structures and basic processing capabilities often related to biologically-inspired computing. We model and simulate random resistive switch networks and analyze their computational capacities. We provide a …

Stressors And Strategies For Managing Urban Water Scarcity: Perspectives From The Field, Vivek Shandas, Rosa Lehman, Kelli L. Larson, Jeremy Bunn, Heejun Chang

Urban Studies and Planning Faculty Publications and Presentations

Largely because water resource planning in the U.S. has been separated from land-use planning, opportunities for explicitly linking planning policies to water availability remain unexamined. The pressing need for better coordination between land-use planning and water management is amplified by changes in the global climate, which will place even greater importance on managing water supplies and demands than in the past. By surveying land and water managers in two urbanizing regions of the western United States—Portland, Oregon and Phoenix Arizona—we assessed the extent to which their perspectives regarding municipal water resource management align or differ. We specifically focus on characterizing …

Exploring, Exploiting And Evolving Diversity Of Aquatic Ecosystem Models: A Community Perspective, Annette B.G. Janssen, George B. Arhonditsis, Arthur Beusen, Karsten Bolding, Louise Bruce, Jorn Bruggeman, Raoul-Marie Couture, Andrea S. Downing, J. Alex Elliott, Marieke A. Frassl, Gideon Gal, Daan J. Gerla, Matthew R. Hipsey, Fenjuan Hu, Stephen C. Ives, Jan H. Janse, Erik Jeppesen, Klaus D. Jöhnk, David Kneis, Xiangzhen Kong, Jan J. Kuiper, Moritz K. Lehmann, Carsten Lemmen, Deniz Özkundakci, Thomas Petzoldt, Karsten Rinke, Barbara J. Robson, René Sachse, Sebastiaan A. Schep, Martin Schmid, Huub Scholten, Sven Teurlincx, Dennis Trolle, Tineke A. Troost, Anne A. Van Dam, Luuk P.A. Van Gerven, Mariska Weijerman, Scott A. Wells, Wolf M. Mooij

Civil and Environmental Engineering Faculty Publications and Presentations

Here, we present a community perspective on how to explore, exploit and evolve the diversity in aquatic ecosystem models. These models play an important role in understanding the functioning of aquatic ecosystems, filling in observation gaps and developing effective strategies for water quality management. In this spirit, numerous models have been developed since the 1970s. We set off to explore model diversity by making an inventory among 42 aquatic ecosystem modellers, by categorizing the resulting set of models and by analysing them for diversity. We then focus on how to exploit model diversity by comparing and combining different aspects of …

The Distribution And Reproductive Success Of The Western Snowy Plover Along The Oregon Coast - 2015, David J. Lauten, Kathleen A. Castelein, J. Daniel Farrar, Adam A. Kotaich, Eleanor P. Gaines

Institute for Natural Resources Publications

We monitored the distribution, abundance and productivity of the federally threatened Western Snowy Plover (Charadrius nivosus nivosus) along the Oregon coast from 3 April – 11 September 2015. From north to south, we surveyed and monitored plover activity at Sutton Beach, Siltcoos River estuary, the Dunes Overlook, North and South Tahkenitch Creek, Tenmile Creek, Coos Bay North Spit, Bandon Snowy Plover Management Area, New River HRA and adjacent lands, and Floras Lake. Our objectives in 2015 were to: 1) estimate the size of the adult Snowy Plover population along the Oregon coast, 2) locate plover nests, 3) determine …

Evaluation Of Large‑Scale Meteorological Patterns Associated With Temperature Extremes In The Narccap Regional Climate Model Simulations, Paul C. Loikith, Duane E. Waliser, Huikyo Lee, J. David Neelin, Benjamin Lintner, Seth Mcginnis, Linda Mears, Jinwon Kim

Geography Faculty Publications and Presentations

Large-scale meteorological patterns (LSMPs) associated with temperature extremes are evaluated in a suite of regional climate model (RCM) simulations contributing to the North American Regional Climate Change Assessment Program. LSMPs are characterized through composites of surface air temperature, sea level pressure, and 500 hPa geopotential height anomalies concurrent with extreme temperature days. Six of the seventeen RCM simulations are driven by boundary conditions from reanalysis while the other eleven are driven by one of four global climate models (GCMs). Four illustrative case studies are analyzed in detail. Model fidelity in LSMP spatial representation is high for cold winter extremes near …

Investigations In Transportation, William G. Becker, Carol Biskupic Knight

TREC Final Reports

The Investigations in Transportation program is an elementary school partnership and curriculum development project that will engage science, technology, engineering and mathematics (STEM) professionals in school-based activities and projects that will bring real-world applications to elementary classrooms for grades 3-5. The Portland Metro STEM Partnership (PMSP) is providing leadership and facilitation to a team of educators from Portland State University, Beaverton School District and Hillsboro School District who will work with volunteers from the Oregon Department of Transportation (ODOT) to design, develop, implement and assess the impact of an in-class unit entitled "Investigations in Transportation". This report presents a study …

Integrating Freight Into Livable Communities, Kristine M. Williams, Alexandria Carroll

TREC Final Reports

Where livability is a goal of the planning process, freight runs the risk of not being considered except as an afterthought or as something to be excluded. Yet, freight is an integral part of local economic development. Because economic prosperity is a key characteristic of livable communities, freight must be incorporated into the planning process. This study explores the relationship between freight and livability through a comprehensive literature review and case study research. The final report includes a menu of strategies and case study perspectives that highlight the importance of transportation and land use integration, interagency coordination, and context-sensitivity in …

Faculty Senate Monthly Packet November 30, 2015, Portland State University Faculty Senate

Faculty Senate Monthly Packets

The November 30, 2015 Monthly packet includes the November 30th agenda and appendices and the Faculty Senate minutes and attachments from the meeting held November 2, 2015.

The Impeccable Timing Of The Apple Maggot Fly, Rhagoletis Pomonella (Dipetera: Tephritidae), And Its Implications For Ecological Speciation, Monte Arthur Mattsson

Dissertations and Theses

Speciation is the process by which life diversifies into discrete forms, and understanding its underlying mechanisms remains a primary focus for biologists. Increasingly, empirical studies are helping explain the role of ecology in generating biodiversity. Adaptive radiations are often propelled by selective fitness tradeoffs experienced by individuals that invade new habitats, resulting in reproductive isolation from ancestral conspecifics and potentially cladogenesis. Host specialist insects are among the most speciose organisms known and serve as highly useful models for studying adaptive radiations. We are just beginning to understand the pace and degree with which these insects diversify. The apple maggot, Rhagoletis …

Utilizing Humidity And Temperature Data To Advance Monitoring And Prediction Of Meteorological Drought, Ali Behrangi, Paul C. Loikith, Eric J. Fetzer, Hai M. Nguyen, Stephanie L. Granger

Geography Faculty Publications and Presentations

The fraction of land area over the Continental United States experiencing extreme hot and dry conditions has been increasing over the past several decades, consistent with expectation from anthropogenic climate change. A clear concurrent change in precipitation, however, has not been confirmed. Vapor pressure deficit (VPD), combining temperature and humidity, is utilized here as an indicator of the background atmospheric conditions associated with meteorological drought. Furthermore, atmospheric conditions associated with warm season drought events are assessed by partitioning associated VPD anomalies into the temperature and humidity components. This approach suggests that the concurrence of anomalously high temperature and low humidity …

Polymeric Porphyrins As Solar Photocatalysts, Nicholas Upton Day

Dissertations and Theses

Research concentrated on the absorption, transformation, and storage of light energy is useful for the energy challenges faced by humanity. In particular, photocatalysis using solar energy to generate useful fuels has become a primary research goal in the drive to replace fossil fuels for the future. In this dissertation it is shown that poly-tetra(4-aminophenyl)porphyrin (pTAPP) can be oxidatively polymerized using a variety of methods, including electropolymerization, chemical oxidation, and interfacial polymerization and that pTAPP has photocatalytic ability to reduce O₂ to H₂O₂ for a storable fuel.

Organic conductive polymers such as pTAPP are attractive catalysts because …

Fathers Caring For Children With Special Health Care Needs: Experiences Of Work-Life Fit, Claudia Sellmaier

Dissertations and Theses

Research about employed fathers of children with special health care needs (SHCN) is still limited, leaving fathers without the necessary workplace and community supports to better integrate work and life. Caregivers with exceptional caregiving responsibilities report greater levels of work-family conflict and considerable caregiver strain, as well as negative employment and financial consequences related to their caregiving responsibilities. These caregivers often struggle to access community supports such as childcare, after-school care, and support from friends and neighbors.

This study provides insights into the types of job, home, and community resources that are relevant for fathers of children with SHCN in …

Removal Of Multiple-Tip Artifacts From Scanning Tunneling Microscope Images By Crystallographic Averaging, Jack C. Straton, Bill Moon, Taylor T. Bilyeu, Peter Moeck

Physics Faculty Publications and Presentations

Crystallographic image processing (CIP) techniques may be utilized in scanning probe microscopy (SPM) to glean information that has been obscured by signals from multiple probe tips. This may be of particular importance for scanning tunneling microscopy (STM) and requires images from samples that are periodic in two dimensions (2D). The image-forming current for double-tips in STM is derived with a slight modification of the independent-orbital approximation (IOA) to allow for two or more tips. Our analysis clarifies why crystallographic averaging works well in removing the effects of a blunt STM tip (that consists of multiple mini-tips) from recorded 2D periodic …

Model-Based Analytics And Processes For Transportation Investment Alternatives Analyses: From Least Cost Planning To Multi Criterion Evaluation, Jeff Frkonja

PSU Transportation Seminars

Many public and private organizations that make decisions regarding whether and how to invest in transportation assets or programs do so via a structured decision-support process. This talk will address the technical aspects of the family of such processes that use travel demand model outputs—and other sources of quantified performance data—as inputs to analytic tools including benefit cost analysis (BCA) and multi criterion evaluation. Example applications of this framework have included tolling and pricing studies, capital investment alternatives analyses, and programmatic evaluations. Example processes include "Least Cost Planning" frameworks borrowed originally from the power generation industry.

The talk will also …

Inside An Open Educational Resource Initiative: Pdxopen At Portland State University, Karen Bjork

Library Faculty and Staff Publications and Presentations

As the rising cost of textbooks continues to burden students, some libraries have begun to facilitate the creation and sharing of Open Educational Resources. At Portland State University, Head of Digital Initiatives Karen Bjork has worked with faculty on campus to publish five new open textbooks in their repository, PDXScholar, all as part of a Provost-backed initiative. The initiative aligns with their institutional mission of better serving the student body: in their first term of use, the open textbooks saved students nearly $24,000!

Over the course of the presentation, Karen will discuss the Provost’s initiative and how the library continues …

Design And Synthesis Of Novel Chloroquine-Based Antimalarials, Kevin Vincent Murphy

Dissertations and Theses

Malaria is an infectious, often fatal disease that afflicts nearly 200 million people every year. The disease, characterized by recurring and extreme flu-like symptoms, is caused by the protozoan parasite Plasmodium falciparum. Victims usually contract the disease through a mosquito vector. Chloroquine is a chemotherapeutic that was introduced in the 1940s. For many years the drug was the foremost treatment of malaria, being effective and producing few side effects. Unfortunately, tolerance to chloroquine developed when the parasite evolved a resistance mechanism. Newer drugs have been developed and implemented, but these medicines also show a decreasing effect with continued administration. …

Faculty Senate Monthly Packet November 2, 2015, Portland State University Faculty Senate

Faculty Senate Monthly Packets

The November 2, 2015 Monthly packet includes the November agenda and appendices and the Faculty Senate minutes and attachments from the meeting held October 5, 2015.

Gc/Ms Analysis Of Some Extractives From Eichhornia Crassipes, Héctor A. Fileto-Pérez, O. Miriam Rutiaga-Quiñones, Mark D. Sytsma, Isabelle M. Lorne, Wentai Luo, James F. Pankow, José G. Rutiaga-Quiñones

Environmental Science and Management Faculty Publications and Presentations

Eichhornia crassipes (water hyacinth) is an invasive weed that causes serious issues for rivers, lakes, and other reservoirs around the world, although it can be an excellent source for bioactive compounds such as phytosterols and some steroids found in many plants. In this study, water hyacinth samples from both Durango and Distrito Federal in Mexico were collected. Ascendant extracts (cyclohexane, hexane, acetone, and methanol) from their leaves, stems, and roots were analyzed. Using boron trifluoride (similar to 10% [similar to 1.3 M] in 1-butanol), all extracts were derivatized. Twenty-four derivatized samples were analyzed using a gas chromatography-mass spectrometry (GC/MS) method. …

General Formalism For Singly-Thermostated Hamiltonian Dynamics, John D. Ramshaw

Physics Faculty Publications and Presentations

A general formalism is developed for constructing modified Hamiltonian dynamical systems which preserve a canonical equilibrium distribution by adding a time evolution equation for a single additional thermostat variable. When such systems are ergodic, canonical ensemble averages can be computed as dynamical time averages over a single trajectory. Systems of this type were unknown until their recent discovery by Hoover and colleagues. The present formalism should facilitate the discovery, construction, and classification of other such systems by encompassing a wide class of them within a single unified framework. This formalism includes both canonical and generalized Hamiltonian systems in a state …

Increased Taxonomic And Functional Similarity Does Not Increase The Trophic Similarity Of Communities, Thomas K. Pool, Julien Cucherousset, Stéphanie Boulêtreau, Sébastien Villéger, Angela L. Strecker, Gaël Grenouillet

Environmental Science and Management Faculty Publications and Presentations

Aim: Despite a long-standing research interest in the association between the biodiversity (i.e. taxonomic and functional composition) and trophic structure of communities, our understanding of the relationship remains limited. Community assembly theory predicts that niche partitioning will result in communities with a diverse array of functional traits, which in turn may facilitate a correspondingly diverse array of trophic interactions that define the trophic niche of those communities. The aim of our study is to test this prediction.

Methods: We built a database composed of functional traits and stable isotope values (δ¹³C and δ¹⁵N) for …

Dreissenid Mussel Research Priorities Workshop, Mark D. Sytsma, Stephen Phillips, Timothy D. Counihan

Center for Lakes and Reservoirs Publications and Presentations

Currently, dreissenid mussels have yet to be detected in the northwestern part of the United States and western Canada. Infestation of one of the jurisdictions within the mussel-free Pacific Northwest would likely have significant economic, soci­etal and environmental implications for the entire region. Understanding the biology and environmental tolerances of dreissenid mussels, and effectiveness of various man­agement strategies, is key to prevention.

On November 4-5, 2015, the Aquatic Bioinvasion Research and Policy Institute and the Center for Lakes and Reservoirs at Portland State University, the US Geological Survey, and the Pacific States Marine Fisheries Commission, convened a Dreissenid Mussel Research …

Unfolding Trees & Symmetrically-Associated Graphs, Kaelyn Flowerday

University Honors Theses

An unfolding tree is an object reflecting the connectivity properties of a vector-labelled graph. First introduced in the context of theoretical computer science as a way of describing information flow in a neural net model of graph-structured data, unfolding trees have remained unexplored within graph theory. They give rise to an equivalence relation on the vertices of a graph, one which describes the connective environments of vertices but is not reducible to automorphism group orbits. This thesis formalizes unfolding trees and investigates their properties along with the implications of this vertex relation. This leads to the graph property of symmetric-association; …

Principal Leadership Practices In High Poverty K-5 Model Schools In Oregon, Janice Marie Adams

Dissertations and Theses

Children living in poverty in the United States face some of life's greatest challenges, including achieving academic success in school. Evidence is also emerging of a growing income disparity in America that affects families, communities and local labor markets in ways that can undermine the effectiveness of schools serving disadvantaged populations (Duncan & Murnane, 2011). Evidence exists, however, that high academic performance is within the reach of all children in high poverty schools, and that principal leadership is a contributing factor.

This study examined principal leadership practices in three high poverty K-5 elementary schools in Oregon identified as Model schools …

Convergence Of Microclimate In Residential Landscapes Across Diverse Cities In The United States, Sharon J. Hall, J Learned, Benjamin Ruddell, Kelli L. Larson, Jeannine Cavender-Bares, Neil D. Bettez, Peter M. Groffman, J. Morgan Grove, James B. Heffernan, Sarah E. Hobbie, Kristen Larson, Jennifer L. Morse, Christopher Neill, Kristen C. Nelson, Jarlath O'Neil-Dunne, Laura A. Ogden, Diane E. Pataki, William D. Pearse, Colin Polsky, Rinku Roy Chowdhury, Meredith K. Steele, Tara Trammell

Environmental Science and Management Faculty Publications and Presentations

Context The urban heat island (UHI) is a welldocumented pattern of warming in cities relative to rural areas. Most UHI research utilizes remote sensing methods at large scales, or climate sensors in single cities surrounded by standardized land cover. Relatively few studies have explored continental-scale climatic patterns within common urban microenvironments such as residential landscapes that may affect human comfort.

Objectives We tested the urban homogenization hypothesis which states that structure and function in cities exhibit ecological ‘‘sameness’’ across diverse regions relative to the native ecosystems they replaced.

Methods We deployed portable micrometeorological sensors to compare air temperature and humidity …

The Rna World: 4,000,000,050 Years Old, Niles Lehman

Chemistry Faculty Publications and Presentations

The notion that molecular systems such as RNA can display a wide range of evolutionary processes in the absence of fully formed cellular life continues to gain support. Understanding how RNA can behave in an abiotic context is a key piece of our picture of how life developed and expanded on the Earth, and by proxy, elsewhere. We can study how RNA behaves in this regard through a combination of in vivo work (with small regulatory RNAs and larger catalytic RNAs alike), experimental work in the laboratory, and through powerful analytical and simulation studies. These efforts will not only grant …

"All The Lovely Ladies" And "Celestarium", Danika Paige Myers

Harlot: A Revealing Look at the Arts of Persuasion

These poems are part of a larger manuscript that explores the poet's lifelong engagement with knitting and sewing—and with the usually woman-centered communities that form around these crafts. The poems also respond to the cultural treatment of craft knowledge as frivolous or simple, highlighting the highly technical nature of such work and the mathematical, structural, and geometric knowledge required to successfully execute textile crafts. Densely referential, these poems invite the reader to play within their sounds and associations, making her own leaps and connections as she reads.

Emoji, Emoji, What For Art Thou?, Lisa Lebduska

Harlot: A Revealing Look at the Arts of Persuasion

This essay provides a history and context for emoji as a way of re-materializing composing while simultaneously arguing that emoji do not threaten alphabetic literacy and instead provide a means of creative graphic expression. The essay acknowledges that n some instances emoji do help to clarify the intent or tone of alphabetic writing, but it notes that emoji, like alphabetic writing, is culturally and contextually bound. Emoji expand expression and doing so open themselves to re-appropriation, intepretation and even misinterpretation, along with the affirming possibilities of artistic creation.

Prediction: The Quintessential Model Validation Test, Wayne Wakeland

Systems Science Friday Noon Seminar Series

It is essential to objectively test how well policy models predict real world behavior. The method used to support this assertion involves the review of three SD policy models emphasizing the degree to which the model was able to fit the historical outcome data and how well model-predicted outcomes matched real world outcomes as they unfolded. Findings indicate that while historical model agreement is a favorable indication of model validity, the act of making predictions without knowing the actual data, and comparing these predictions to actual data, can reveal model weaknesses that might be overlooked when all of the available …

Geometric Approach To Convex Subdifferential Calculus, Boris S. Mordukhovich, Nguyen Mau Nam

Mathematics and Statistics Faculty Publications and Presentations

In this paper, we develop a geometric approach to convex subdifferential calculus in finite dimensions with employing some ideas of modern variational analysis. This approach allows us to obtain natural and rather easy proofs of basic results of convex subdifferential calculus in full generality and also derive new results of convex analysis concerning optimal value/marginal functions, normals to inverse images of sets under set-valued mappings, calculus rules for coderivatives of single-valued and set-valued mappings, and calculating coderivatives of solution maps to parameterized generalized equations governed by set-valued mappings with convex graphs.