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Energy Efficiency Measures In Oregon Instructional School Facilities Implemented Under Sb 1149, And Improved Student Performance, Virginia Saraswati, Timothy Hulseman, John Bauer Dec 2017

Energy Efficiency Measures In Oregon Instructional School Facilities Implemented Under Sb 1149, And Improved Student Performance, Virginia Saraswati, Timothy Hulseman, John Bauer

Engineering and Technology Management Faculty Publications and Presentations

Energy generation, transmission, and distribution, requires a costly infrastructure to meet increasing demand. The success of energy efficiency measures (EEM's) are largely based on cumulative energy and cost savings. This research attempts to add improved student learning to the list of benefits when implementing EEM's in instructional school facilities. Our literature review of current research demonstrates that maximizing natural daylight in the design of school buildings reduces energy consumption, as well as improves student performance [1]. Additionally, EEM's can benefit student performance through direct and indirect environmental improvements that enhance usability, productivity, and comfort [2]. Through statistical analysis of data …


The Pacific Sentinel, December 2017, Portland State University. Student Publications Board Dec 2017

The Pacific Sentinel, December 2017, Portland State University. Student Publications Board

The Pacific Sentinel

Editor: Kasey Colton

Articles in this issue include:

  • Animating Life;
  • Socialist Students takes Root at Portland State;
  • Chicken Soup for the Book Nerd's Soul; Decolonizing our Education;
  • Yiddish Words to Spice up your Christmas Celebration


Managing Herbicide Resistance: Listening To The Perspectives Of The Practitioners, Jill Schroeder, David Shaw, Michael Barrett, Harold Coble, Amy Asmus, Raymond Jussaume, David E. Ervin Dec 2017

Managing Herbicide Resistance: Listening To The Perspectives Of The Practitioners, Jill Schroeder, David Shaw, Michael Barrett, Harold Coble, Amy Asmus, Raymond Jussaume, David E. Ervin

Economics Faculty Publications and Presentations

No abstract provided.


Confined Photonic Mode Propagation Observed In Photoemission Electron Microscopy, Theodore Stenmark, Robert Campbell Word, Rolf Konenkamp Dec 2017

Confined Photonic Mode Propagation Observed In Photoemission Electron Microscopy, Theodore Stenmark, Robert Campbell Word, Rolf Konenkamp

Physics Faculty Publications and Presentations

Using photoemission electron microscopy (PEEM) we present a comparative analysis of the wavelength dependence of propagating fields in a simple optical slab waveguide and a thin film photonic crystal W1-type waveguide. We utilize an interferometric imaging approach for light in the near-ultraviolet regime where a 2-photon process is required to produce photoelectron emission. The typical spatial resolution in these experiments is < 30 nm. Electromagnetic theory and finite element simulations are shown to be in good agreement with the experimental observations. Our results indicate that multiphoton PEEM is a useful sub-wavelength characterization technique in thin film optics.


Two-Photon Excitation, Fluorescence Microscopy, And Quantitative Measurement Of Two-Photon Absorption Cross Sections, Fredrick Michael Dearmond Dec 2017

Two-Photon Excitation, Fluorescence Microscopy, And Quantitative Measurement Of Two-Photon Absorption Cross Sections, Fredrick Michael Dearmond

Dissertations and Theses

As optical microscopy techniques continue to improve, most notably the development of super-resolution optical microscopy which garnered the Nobel Prize in Chemistry in 2014, renewed emphasis has been placed on the development and use of fluorescence microscopy techniques. Of particular note is a renewed interest in multiphoton excitation due to a number of inherent properties of the technique including simplified optical filtering, increased sample penetration, and inherently confocal operation. With this renewed interest in multiphoton fluorescence microscopy, comes an increased demand for robust non-linear fluorescent markers, and characterization of the associated tool set.

These factors have led to an experimental …


Variational Geometric Approach To Generalized Differential And Conjugate Calculi In Convex Analysis, Boris S. Mordukhovich, Nguyen Mau Nam, R. Blake Rector, T. Tran Dec 2017

Variational Geometric Approach To Generalized Differential And Conjugate Calculi In Convex Analysis, Boris S. Mordukhovich, Nguyen Mau Nam, R. Blake Rector, T. Tran

Mathematics and Statistics Faculty Publications and Presentations

This paper develops a geometric approach of variational analysis for the case of convex objects considered in locally convex topological spaces and also in Banach space settings. Besides deriving in this way new results of convex calculus, we present an overview of some known achievements with their unified and simplified proofs based on the developed geometric variational schemes. Key words. Convex and variational analysis, Fenchel conjugates, normals and subgradients, coderivatives, convex calculus, optimal value functions.


Social Balance And The Bernoulli Equation, J. J. P. Veerman Dec 2017

Social Balance And The Bernoulli Equation, J. J. P. Veerman

Mathematics and Statistics Faculty Publications and Presentations

Since the 1940s there has been an interest in the question of why social networks often give rise to two antagonistic factions. Recently a dynamical model of how and why such a balance might occur was developed. This note provides an introduction to the notion of social balance and a new (and simplified) analysis of that model. This new analysis allows us to choose general initial conditions, as opposed to the symmetric ones previously considered. We show that for general initial conditions, four factions will evolve instead of two. We characterize the four factions, and give an idea of their …


Classification Of Minimal Separating Sets In Low Genus Surfaces, J. J. P. Veerman, William Maxwell, Victor Rielly, Austin K. Williams Dec 2017

Classification Of Minimal Separating Sets In Low Genus Surfaces, J. J. P. Veerman, William Maxwell, Victor Rielly, Austin K. Williams

Mathematics and Statistics Faculty Publications and Presentations

Consider a surface S and let M ⊂ S. If S \ M is not connected, then we say M separates S, and we refer to M as a separating set of S. If M separates S, and no proper subset of M separates S, then we say M is a minimal separating set of S. In this paper we use computational methods of combinatorial topology to classify the minimal separating sets of the orientable surfaces of genus g = 2 and g = 3. The classification for genus 0 and 1 was done …


Multi-Dimensional Drought Risk Assessment Based On Socio-Economic Vulnerabilities And Hydro-Climatological Factors, Ali Ahmadalipour Nov 2017

Multi-Dimensional Drought Risk Assessment Based On Socio-Economic Vulnerabilities And Hydro-Climatological Factors, Ali Ahmadalipour

Dissertations and Theses

Drought is among the costliest natural hazards developing slowly and affecting large areas, which imposes severe consequences on society and economy. Anthropogenic climate change is expected to exacerbate drought in various regions of the globe, making its associated socioeconomic impacts more severe. Such impacts are of higher concern in Africa, which is mainly characterized by arid climate and lacking infrastructure as well as social development. Furthermore, the continent is expected to experience vast population growth, which will make it more vulnerable to the adverse effects of drought. This study provides the first comprehensive multi-dimensional assessment of drought risk across the …


Evaluating Student Growth In High School Science Education Through The Lens Of Science Identity, Vanessa Tran Nov 2017

Evaluating Student Growth In High School Science Education Through The Lens Of Science Identity, Vanessa Tran

University Honors Theses

The Physics First sequence has been known to increase competence and test scores of students, but how is science identity developed through Physics First? Particularly, this study compares the differences between males and females to better understand if competence makes a difference in how science identity develops through Physics First. The Colorado Learning Attitudes about Science Survey (CLASS) is utilized to understand how science attitudes may reflect science identity. In focusing on the self-perceived aspect of science identity, real-world connections and self-efficacy categories in which science identity are evaluated. The study found significant negative shifts in real world connection attitudes …


Can A Three-Day Training Focusing On The Nature Of Science And Science Practices As They Relate To Mind In The Making Make A Difference In Preschool Teachers' Self-Efficacy Engaging In Science Education?, Colleen Meacham Nov 2017

Can A Three-Day Training Focusing On The Nature Of Science And Science Practices As They Relate To Mind In The Making Make A Difference In Preschool Teachers' Self-Efficacy Engaging In Science Education?, Colleen Meacham

Dissertations and Theses

As technology and our world understanding develop, we will need citizens who are able to ask and answer questions that have not been thought of yet. Currently, high school and college graduates entering the workforce demonstrate a gap in their ability to develop unique solutions and fill the current technology-driven jobs. To address this gap, science needs to be prioritized early in children's lives. The focus of this research was to analyze a science training program that would help pre-school teachers better understand Mind in the Making life skills, the nature of science, science practices, and improve their self-efficacy integrating …


Analysis Of The Acid-Base Balance Of Mainstream Tobacco Smoke And Its Effect On The Gas/Particle Partitioning Of Nicotine, Amy Kathleen Devita-Mcbride Nov 2017

Analysis Of The Acid-Base Balance Of Mainstream Tobacco Smoke And Its Effect On The Gas/Particle Partitioning Of Nicotine, Amy Kathleen Devita-Mcbride

Dissertations and Theses

Tobacco smoke particulate matter (PM) is a complex mixture of condensed organic compounds, with about 5 to 10% water. Its general properties are similar in some respects to that of atmospheric organic aerosol PM and thus provides a useful surrogate when studying atmospheric PM. Due to its ability to undergo acid-base chemistry, nicotine is of particular interest in the tobacco smoke system. The gas/particle partitioning of nicotine depends on the protonation state of nicotine in the particles, so the distribution of nicotine between these phases provides a means of understanding the acid-base balance in the tobacco smoke system. The goal …


L2 Motivation In Japanese Elementary Efl Classrooms: A Review Of The Literature, Cassandra Brown Nov 2017

L2 Motivation In Japanese Elementary Efl Classrooms: A Review Of The Literature, Cassandra Brown

University Honors Theses

In their formal education systems, East Asian nations began to actively incorporate English lessons around the turn of the 21 st century. For Japan, perhaps the most controversial reform was introducing compulsory English as a foreign language (EFL) instruction at the primary school level in 2011. A central policy goal specifies guidelines for encouraging positive affect and long-term motivation toward the language. In this literature review, I discuss empirical studies from within the past five years which explore Japanese elementary EFL students’ motivation and engagement in class. Researchers framed their inquiry within the self-determination theory (SDT) framework, a dominant theory …


California's Paradigm Shift From Los To Vmt As A Transportation Impact Metric: Policies, Politics, And Possibilities, Robert Liberty, Lynn Peterson Nov 2017

California's Paradigm Shift From Los To Vmt As A Transportation Impact Metric: Policies, Politics, And Possibilities, Robert Liberty, Lynn Peterson

PSU Transportation Seminars

As part of California's effort to reduce greenhouse gas emissions, the state has passed a law leading to a radical shift in how it analyzes the traffic impacts of new land use developments and transportation projects. SB 743's goal is to "more appropriately balance the needs of congestion management with statewide goals related to infill development, promotion of public health through active transportation, and reduction of greenhouse gas emissions."

The new measure of transportation impacts will be based on vehicle miles traveled (VMT) instead of level of service (LOS). This ground shift has broad implications for lead agencies, planners, MPOs, …


Assessing The Impact Of Land Use And Travel On Carbon Dioxide Emissions In Portland, Oregon, Zakari Mumuni Nov 2017

Assessing The Impact Of Land Use And Travel On Carbon Dioxide Emissions In Portland, Oregon, Zakari Mumuni

Dissertations and Theses

The negative consequences of sprawling metropolitan regions have attracted attention in both academia and in practice regarding how to better design settlements and alter travel behavior in a quest to curtail vehicle emissions. Studies that have attempted to understand the nexus between land use, travel and vehicle emissions have not been able to address the issue of self-selection in a satisfactory manner. Self-selection occurs when households choose their residential location based, in part, on expected travel behavior. This non-random experience makes the use of traditional regression frameworks that strongly rely on random sampling, unsuitable. This replication study's purpose was to …


Entropy Production And Volume Contraction In Thermostated Hamiltonian Dynamics, John D. Ramshaw Nov 2017

Entropy Production And Volume Contraction In Thermostated Hamiltonian Dynamics, John D. Ramshaw

Physics Faculty Publications and Presentations

Patra et al. [Int. J. Bifurcat. Chaos 26, 1650089 (2016)] recently showed that the time-averaged rates of entropy production and phase-space volume contraction are equal for several different molecular dynamics methods used to simulate nonequilibrium steady states in Hamiltonian systems with thermostated temperature gradients. This equality is a plausible statistical analog of the second law of thermodynamics. Here we show that those two rates are identically equal in a wide class of methods in which the thermostat variables z are determined by ordinary differential equations of motion (i.e., methods of the Nosé-Hoover or integral feedback control type). This …


Mixing Times Of Organic Molecules Within Secondary Organic Aerosol Particles: A Global Planetary Boundary Layer Perspective, Adrian M. Maclean, Christopher L. Butenhoff, James W. Grayson, Kelley Barsanti, Jose L. Jimenez, Allan K. Bertram Nov 2017

Mixing Times Of Organic Molecules Within Secondary Organic Aerosol Particles: A Global Planetary Boundary Layer Perspective, Adrian M. Maclean, Christopher L. Butenhoff, James W. Grayson, Kelley Barsanti, Jose L. Jimenez, Allan K. Bertram

Physics Faculty Publications and Presentations

When simulating the formation and life cycle of secondary organic aerosol (SOA) with chemical transport models, it is often assumed that organic molecules are well mixed within SOA particles on the timescale of 1 h. While this assumption has been debated vigorously in the literature, the issue remains unresolved in part due to a lack of information on the mixing times within SOA particles as a function of both temperature and relative humidity. Using laboratory data, meteorological fields, and a chemical transport model, we estimated how often mixing times are < 1 h within SOA in the planetary boundary layer (PBL), the region of the atmosphere where SOA concentrations are on average the highest. First, a parameterization for viscosity as a function of temperature and RH was developed for α-pinene SOA using room-temperature and low-temperature viscosity data for α-pinene SOA generated in the laboratory using mass concentrations of ∼ 1000 µg m−3. Based on this parameterization, the mixing times within α-pinene SOA are < 1 h for 98.5 % and 99.9 % of the occurrences in the PBL during January and July, respectively, when concentrations are significant (total organic aerosol concentrations are > 0.5 µg m−3 at the surface). Next, as a starting …


Accessing Blue Spaces: Social And Geographic Factors Structuring Familiarity With, Use Of, And Appreciation Of Urban Waterways, Melissa Haeffner, Douglas Jackson-Smith, Martin Buchert, Jordan Risley Nov 2017

Accessing Blue Spaces: Social And Geographic Factors Structuring Familiarity With, Use Of, And Appreciation Of Urban Waterways, Melissa Haeffner, Douglas Jackson-Smith, Martin Buchert, Jordan Risley

Environmental Science and Management Faculty Publications and Presentations

Are urban waterways amenities, and if so, are there inequities in household access? While urban waterways represent a potential site for access to nature within the urban environment, there have been few studies on the accessibility and interactions with water features in particular, what we refer to as “blue spaces." This study drew on a sample of households in Northern Utah living in neighborhoods with a nearby river or canal to ask if local waterways provide positive impacts to households and if proximity to them increased the likelihood of households spending time at them and being familiar with them. We …


Research & Strategic Partnerships: Quarterly Review, Volume 4, Issue 2, Portland State University. Research & Strategic Partnerships Nov 2017

Research & Strategic Partnerships: Quarterly Review, Volume 4, Issue 2, Portland State University. Research & Strategic Partnerships

Portland State Research Magazine

This issue highlights some of the innovative work PSU faculty members and graduate students are doing around campus, work aimed at producing:

  • New nanotechnologies for medical researchers seeking novel therapies to treat diseases
  • A solution to the problem of unregulated contaminants in water supplies
  • A powerful new tool for forecasting droughts and drought recovery times
  • Three-dimensional maps of molecules associated with memory formation, cognition, and learning, and
  • Innovations in physics education that will impact students entering health-related fields

Additionally, this issue takes a close look at two recent grants received by PSU faculty members, one of which will improve our …


Ion Transport Across Biological Membranes By Carborane-Capped Gold Nanoparticles, Marcin P. Grzelczak, Stephen P. Danks, Robert C. Klipp, Domagoj Belic, Adnana Zaulet, Casper Kunstmann-Olsen, Dan F. Bradley, Tatsuya Tsukuda, Clara ViñAs, Francesc Teixidor, Jonathan J. Abramson, Mathias Brust Nov 2017

Ion Transport Across Biological Membranes By Carborane-Capped Gold Nanoparticles, Marcin P. Grzelczak, Stephen P. Danks, Robert C. Klipp, Domagoj Belic, Adnana Zaulet, Casper Kunstmann-Olsen, Dan F. Bradley, Tatsuya Tsukuda, Clara ViñAs, Francesc Teixidor, Jonathan J. Abramson, Mathias Brust

Physics Faculty Publications and Presentations

Carborane-capped gold nanoparticles (Au/carborane NPs, 2–3 nm) can act as artificial ion transporters across biological membranes. The particles themselves are large hydrophobic anions that have the ability to disperse in aqueous media and to partition over both sides of a phospholipid bilayer membrane. Their presence therefore causes a membrane potential that is determined by the relative concentrations of particles on each side of the membrane according to the Nernst equation. The particles tend to adsorb to both sides of the membrane and can flip across if changes in membrane potential require their repartitioning. Such changes can be made either with …


Building Planner Commitment: Are California’S Sb 375 And Oregon’S Sb 1059 Models For Climate-Change Mitigation?, Keith Bartholomew, David Proffitt Nov 2017

Building Planner Commitment: Are California’S Sb 375 And Oregon’S Sb 1059 Models For Climate-Change Mitigation?, Keith Bartholomew, David Proffitt

TREC Final Reports

California’s Sustainable Communities and Climate Protection Act (SB 375) and the Oregon Sustainable Transportation Initiative (SB 1059) have made them the first states in the nation to try and reduce greenhouse gas (GHG) emissions using the transportation-planning process. Evaluating how these pioneering laws have changed local planning processes – as well as plans themselves – in each state provides insight into the laws’ effectiveness at changing development patterns in a way that reduces GHG emissions, without waiting decades to see the effects in the built environment. Both states’ laws require metropolitan planning organizations (MPOs) and the municipalities that comprise them …


Using The Planning Process To Mitigate Climate Change, Keith Bartholomew Nov 2017

Using The Planning Process To Mitigate Climate Change, Keith Bartholomew

TREC Project Briefs

This research evaluates how Oregon’s SB 1059 and California’s SB 375 have integrated climate change mitigation strategies into local planning processes, and seeks to understand how transportation planning can help slow climate change.


Deconstruction In Portland: Summary Of Activity, Emma Willingham, Peter Hulseman, Mike Paruszkiewicz Nov 2017

Deconstruction In Portland: Summary Of Activity, Emma Willingham, Peter Hulseman, Mike Paruszkiewicz

Northwest Economic Research Center Publications and Reports

On October 31st, 2016, the City of Portland instituted an ordinance requiring the deconstruction of all residential homes and duplexes built prior to 1917 or possessing a historical designation. Deconstruction is a relatively new industry, and with this local regulatory encouragement, several new contractors became certified to participate in the expanded market. This report provides background on the industry, largely from the 2016 report researched and written by the Northwest Economic Research Center (NERC) in anticipation of the requirement, and an examination of what has occurred in the year following the ordinance’s passage, using deconstruction and demolition permit data and …


Inquiry At The Heart Of Teacher Preparation, Maika Yeigh Nov 2017

Inquiry At The Heart Of Teacher Preparation, Maika Yeigh

Curriculum and Instruction Faculty Publications and Presentations

This essay describes the action research projects and culminating conference for a Graduate Teacher Education Program. Teacher candidates conduct year-long research projects with the dual-goal of building a reflective inquiry stance and improving instructional practice.


Northwest Forest Plan The First 20 Years (1994-2013): Watershed Condition Status And Trend, Stephanie A. Miller, Sean N. Gordon, Peter Eldred, Ronald M. Beloin, Steve Wilcox, Mark Raggon, Heidi Andersen, Ariel Muldoon Nov 2017

Northwest Forest Plan The First 20 Years (1994-2013): Watershed Condition Status And Trend, Stephanie A. Miller, Sean N. Gordon, Peter Eldred, Ronald M. Beloin, Steve Wilcox, Mark Raggon, Heidi Andersen, Ariel Muldoon

Institute for Sustainable Solutions Publications and Presentations

We used two data sets to evaluate stream and upslope/riparian condition for sixth-field watersheds in each aquatic province within the Northwest Forest Plan (NWFP) area. The stream evaluation was based on stream sampling data collected from 2002 to the 2013 (214 watersheds) as part of an eight year repeating (rotating) sample design. We are currently halfway through our second rotation of stream sampling, and have repeated 110 watersheds since the second rotation began in 2009. The analysis presented in this report uses roughly half the number of watersheds as was originally intended by the sample design since re-visitation will not …


Fast On-Line Kernel Density Estimation For Active Object Localization, Anthony D. Rhodes, Max H. Quinn, Melanie Mitchell Nov 2017

Fast On-Line Kernel Density Estimation For Active Object Localization, Anthony D. Rhodes, Max H. Quinn, Melanie Mitchell

Computer Science Faculty Publications and Presentations

A major goal of computer vision is to enable computers to interpret visual situations—abstract concepts (e.g., “a person walking a dog,” “a crowd waiting for a bus,” “a picnic”) whose image instantiations are linked more by their common spatial and semantic structure than by low-level visual similarity. In this paper, we propose a novel method for prior learning and active object localization for this kind of knowledge-driven search in static images. In our system, prior situation knowledge is captured by a set of flexible, kernel-based density estimations— a situation model—that represent the expected spatial structure of the given situation. These …


On The Temporal Effects Of Mobile Blockers In Urban Millimeter-Wave Cellular Scenarios, Margarita Gapeyenko, Mikhail Gerasimenko, Andrey Samuylov, Dmitri Moltchanov, Sarabjot Singh, Mustafa Riza Akdeniz, Ehsan Aryafar, Nageen Himayat, Sergey Andreev, Yevgeni Koucheryavy Nov 2017

On The Temporal Effects Of Mobile Blockers In Urban Millimeter-Wave Cellular Scenarios, Margarita Gapeyenko, Mikhail Gerasimenko, Andrey Samuylov, Dmitri Moltchanov, Sarabjot Singh, Mustafa Riza Akdeniz, Ehsan Aryafar, Nageen Himayat, Sergey Andreev, Yevgeni Koucheryavy

Computer Science Faculty Publications and Presentations

Millimeter-wave (mmWave) propagation is known to be severely affected by the blockage of the line-of-sight (LoS) path. In contrast to microwave systems, at shorter mmWave wavelengths such blockage can be caused by human bodies, where their mobility within environment makes wireless channel alternate between the blocked and non-blocked LoS states. Following the recent 3GPP requirements on modeling the dynamic blockage as well as the temporal consistency of the channel at mmWave frequencies, in this paper a new model for predicting the state of a user in the presence of mobile blockers for representative 3GPP scenarios is developed: urban micro cell …


An Analysis Of The Optimal Mix Of Global Energy Resources And The Potential Need For Geoengineering Using The Ceagom Model, John George Anasis, M. A. K. Khalil, George G. Lendaris, Christopher L. Butenhoff, Randall Bluffstone Oct 2017

An Analysis Of The Optimal Mix Of Global Energy Resources And The Potential Need For Geoengineering Using The Ceagom Model, John George Anasis, M. A. K. Khalil, George G. Lendaris, Christopher L. Butenhoff, Randall Bluffstone

Complex Systems Faculty Publications and Presentations

Humanity faces tremendous challenges as a result of anthropogenic climate change caused by greenhouse gas emissions. The mix of resources deployed in order to meet the energy needs of a growing global population is key to addressing the climate change issue. The goal of this research is to examine the optimal mix of energy resources that should be deployed to meet a forecast global energy demand while still meeting desired climate targets. The research includes the unique feature of examining the role that geoengineering can play in this optimization. The results show that some form of geoengineering is likely to …


A Motivational Account Of The Undergraduate Experience In Science: Brief Measures Of Students' Self-System Appraisals, Engagement In Coursework, And Identity As A Scientist, Emily Saxton, Cailin Currie, Ellen A. Skinner, Gwen Shusterman Oct 2017

A Motivational Account Of The Undergraduate Experience In Science: Brief Measures Of Students' Self-System Appraisals, Engagement In Coursework, And Identity As A Scientist, Emily Saxton, Cailin Currie, Ellen A. Skinner, Gwen Shusterman

Psychology Faculty Publications and Presentations

As part of long-standing efforts to promote undergraduates’ success in science, researchers have investigated the instructional strategies and motivational factors that promote student learning and persistence in science coursework and majors. This study aimed to create a set of brief measures that educators and researchers can use as tools to examine the undergraduate motivational experience in science classes. To identify key motivational processes, we drew on self-determination theory (SDT), which holds that students have fundamental needs – to feel competent, related, and autonomous – that fuel their intrinsic motivation. When educational experiences meet these needs, students engage more energetically and …


Prebiotic Rna Network Formation: A Taxonomy Of Molecular Cooperation, Cole Mathis, Sanjay N. Ramprasad, Sara Imari Walker, Niles Lehman Oct 2017

Prebiotic Rna Network Formation: A Taxonomy Of Molecular Cooperation, Cole Mathis, Sanjay N. Ramprasad, Sara Imari Walker, Niles Lehman

Chemistry Faculty Publications and Presentations

Cooperation is essential for evolution of biological complexity. Recent work has shown game theoretic arguments, commonly used to model biological cooperation, can also illuminate the dynamics of chemical systems. Here we investigate the types of cooperation possible in a real RNA system based on the Azoarcusribozyme, by constructing a taxonomy of possible cooperative groups. We construct a computational model of this system to investigate the features of the real system promoting cooperation. We find triplet interactions among genotypes are intrinsically biased towards cooperation due to the particular distribution of catalytic rate constants measured empirically in the real system. For other …