Digital Commons Network^™

The Meaning Of Red And Green In User Interfaces For The Color Deficient, Bassel Hamieh

University Honors Theses

Around 108 million web users are color blind which is a problem when the way we communicate over the web or interfaces is through the use of color. Red and green are two colors that are especially heavily used in interface design because of their strong symbolic associations; red being a sign to warn or stop and green being the opposite. This has a large effect on red-green color blind people who are not able to perceive either of those colors correctly. Many solutions exist that aim to help through color differentiation but none take into account color symbolism. With …

Empirical Analysis Of Cbow And Skip Gram Nlp Models, Tejas Menon

University Honors Theses

CBOW and Skip Gram are two NLP techniques to produce word embedding models that are accurate and performant. They were invented in the seminal paper by T. Mikolov et al. and have since observed optimizations such as negative sampling and subsampling. This paper implements a fully-optimized version of these models using Py-Torch and runs them through a toy sentiment/subject analysis. It is weakly observed that different corpus types affect the skew of word embeddings such that fictional corpus are better suited for sentiment analysis and non-fictional for subject analysis.

Automatic Keyphrase Extraction From Russian-Language Scholarly Papers In Computational Linguistics, Yves Wienecke

University Honors Theses

The automatic extraction of keyphrases from scholarly papers is a necessary step for many Natural Language Processing (NLP) tasks, including text retrieval, machine translation, and text summarization. However, due to the different grammatical and semantic intricacies of languages, this is a highly language-dependent task. Many free and open source implementations of state-of-the-art keyphrase extraction techniques exist, but they are not adapted for processing Russian text. Furthermore, the multi-linguistic character of scholarly papers in the field of Russian computational linguistics and NLP introduces additional complexity to keyphrase extraction. This paper describes a free and open source program as a proof of …

Functional Programming For Systems Software: Implementing Baremetal Programs In Habit, Donovan Ellison

University Honors Theses

Programming in a baremetal environment, directly on top of hardware with very little to help manage memory or ensure safety, can be dangerous even for experienced programmers. Programming languages can ease the burden on developers and sometimes take care of entire sets of errors. This is not the case for a language like C that will do almost anything you want, for better or worse. To operate in a baremetal environment often requires direct control over memory, but it would be nice to have that capability without sacrificing safety guarantees. Rust is a new language that aims to fit this …

Socio-Emotional Learning As A Core Standard In Early Education: Producing Competent Adults, Talia Maras

University Honors Theses

A child’s foundational emotional proficiency is highly predictive of their academic success. It is therefore imperative that center-based, federally funded, public childhood education systems provide their students with a curriculum that facilitates the development of a strong socio-emotional baseline on which to build their cognitive, academic abilities. Drawing on government reports by the US Department of Education and empirical publications from an academic perspective, this paper reviews the nature of current efforts to reform the childhood education system, as seen through the implementation of the common core standards of learning. I review the quality of education that is provided by …

Climate Toolkit: A Resource Manual For Science And Action - Version 2.0, Frank Granshaw

PDXOpen: Open Educational Resources

The Climate Toolkit is a resource manual designed to help the reader navigate the complex and perplexing issue of climate change by providing tools and strategies to explore the underlying science. As such it contains a collection of activities that make use of readily available on-line resources developed by research groups and public agencies. These include web-based climate models, climate data archives, interactive atlases, policy papers, and “solution” catalogs. Unlike a standard textbook, it is designed to help readers do their own climate research and devise their own perspective rather than providing them with a script to assimilate and repeat. …

A Framework For Incorporating Benefits From Urban Forests Into Planning For Livable Cities: A Case Study Of Forest Park, Carole Hardy

Environmental Science and Management Professional Master's Project Reports

Urban forests provide an escape from the noise and chaos of cities. Other services can be overlooked and under-valued. Urban forests cool and filter the air, sequester carbon, filter water removing toxins and sediments from urban runoff, provide habitat for wildlife and improve human health and well-being. Commonly urban forests in the United States (US) lack funds for restoration and research because there is lack of understanding of the need to actively manage what are perceived as wild lands. Generally urban forests are highly disturbed and novel ecosystems that require ongoing active management to remove invasive species, replant native species …

Structure Aware Runge–Kutta Time Stepping For Spacetime Tents, Jay Gopalakrishnan, Joachim Schöberl, Christoph Wintersteiger

Mathematics and Statistics Faculty Publications and Presentations

We introduce a new class of Runge–Kutta type methods suitable for time stepping to propagate hyperbolic solutions within tent-shaped spacetime regions. Unlike standard Runge–Kutta methods, the new methods yield expected convergence properties when standard high order spatial (discontinuous Galerkin) discretizations are used. After presenting a derivation of nonstandard order conditions for these methods, we show numerical examples of nonlinear hyperbolic systems to demonstrate the optimal convergence rates. We also report on the discrete stability properties of these methods applied to linear hyperbolic equations.

Ce-Qual-W2 Hydrodynamic And Water Quality Model Of The Cedar River Municipal Watershed, Amory Spencer Cervarich

Dissertations and Theses

The laterally averaged, two-dimensional model CE-QUAL-W2 was used to develop a water quality model of the Cedar River Municipal Watershed as a reservoir management and climate change scenario tool. The 90,638-acre watershed, located 56 kilometers southeast of Seattle, WA, provides drinking water to over 1.4 million people. The watershed relies on two waterbodies for storage, Chester Morse Lake and the Masonry Pool. The Masonry Dam is the main storage structure in the watershed. The Cedar River flows downstream from the Masonry Dam for 57 kilometers to Lake Washington. The reservoir model simulated Chester Morse Lake and the Masonry Pool. The …

Theater Over Textbooks: How A Neuroscience Outreach Group Utilizing Art In S.T.E.M. Provides Cost-Effective Strategies In Tackling The United States Education Gap, Camden Grant Howard, William Griesar

University Honors Theses

The purpose of this thesis was to summarize the relevant research for the evaluation of a S.T.E.A.M.-based, grassroots, neuroscience outreach group called 'NW Noggin'. This paper discusses the benefits and skills of S.T.E.M. in learning, the benefits and skills of S.T.E.A.M. in learning, educational disparities within the United States, educational outreach groups how they are currently assessed as well as more innovative arts-based and inquiry-based alternative assessments of student knowledge. This paper then focuses on the nonprofit NW Noggin to discuss their goals and activities and possible options for program assessment. This thesis also discusses how they fulfill their civic …

Pre-Emptive Detection Of Mature Pine Drought Stress Using Multispectral Aerial Imagery, Nancy Grulke, Jason Maxfield, Phillip Riggan, Charlie Schrader-Patton

Biology Faculty Publications and Presentations

Drought, ozone (O₃), and nitrogen deposition (N) alter foliar pigments and tree crown structure that may be remotely detectable. Remote sensing tools are needed that pre-emptively identify trees susceptible to environmental stresses could inform forest managers in advance of tree mortality risk. Jeffrey pine, a component of the economically important and widespread western yellow pine in North America was investigated in the southern Sierra Nevada. Transpiration of mature trees differed by 20% between microsites with adequate (mesic (M)) vs. limited (xeric (X)) water availability as described in a previous study. In this study, in-the-crown morphological traits (needle chlorosis, …

Investigation Of Evidence For The Internal Structure Of A Modified Science Motivation Questionnaire Ii (Msmq Ii): A Failed Attempt To Improve Instrument Functioning Across Course, Subject, And Wording Variants, Regis Komperda, Kathryn Hosbein, Michael M. Phillips, Jack Barbera

Chemistry Faculty Publications and Presentations

The Science Motivation Questionnaire II (SMQ II) was developed to measure aspects of student motivation in college-level science courses. Items on the SMQ II are structured such that the word ‘science’ can be replaced with any discipline title (e.g., chemistry) to produce a discipline-specific measure of student motivation. Since its original development as the Science Motivation Questionnaire and subsequent refinement, the SMQ II and its discipline-specific variants have been used in a number of science education studies. However, many studies have failed to produce acceptable validity evidence for their data based on the proposed internal structure of the …

Comparison Of Chemotherapeutic Activities Of Rhodamine-Based Gumbos And Nanogumbos, Nimisha Bhattarai, Mi Chen, Rocío L. Pérez, Sudhir Ravula, Robert Strongin, Karen Mcdonough, Isiah M. Warner

Chemistry Faculty Publications and Presentations

Rhodamine derivatives have been widely investigated for their mitochondrial targeting and chemotherapeutic properties that result from their lipophilic cationic structures. In previous research, we have found that conversion of Rhodamine 6G into nanoGUMBOS, i.e., nanomaterials derived from a group of uniform materials based on organic salts (GUMBOS), led to selective chemotherapeutic toxicity for cancer cells over normal cells. Herein, we investigate the chemotherapeutic activity of GUMBOS derived from four different rhodamine derivatives, two bearing an ester group, i.e., Rhodamine 123 (R123) and SNAFR-5, and two bearing a carboxylic acid group, i.e., rhodamine 110 (R110) and rhodamine B (RB). In this …

Undergraduate Biology Education Research Gordon Research Conference: A Meeting Report, Erin L. Dolan, Michelle Borrero, Kristine Callis-Duehl, Miranda M. Chen Musgrove, Joelyn De Lima, Isi Ero-Tolliver, Laci M. Gerhart, Emma Goodwin, Lindsey R. Hamilton, Meredith A. Henry, Jose Herrera, Bethany Huot, Stacey Kiser, Melissa E. Ko, Marcy E. Kravec, Mark Lee, Lisa B. Limeri, Melanie E. Peffer, Debra Pires, Juan S. Ramirez Lugo, Starlette M. Sharp, Nicole A. Suarez

Biology Faculty Publications and Presentations

The 2019 Undergraduate Biology Education Research Gordon Research Conference (UBER GRC), titled “Achieving Widespread Improvement in Undergraduate Education,” brought together a diverse group of researchers and practitioners working to identify, promote, and understand widespread adoption of evidence-based teaching, learning, and success strategies in undergraduate biology. Graduate students and postdocs had the additional opportunity to present and discuss research during a Gordon Research Seminar (GRS) that preceded the GRC. This report provides a broad overview of the UBER GRC and GRS and highlights major themes that cut across invited talks, poster presentations, and informal discussions. Such themes include the importance of …

Dynamic Response Of Highway Bridge Superstructures Subjected To Wave Action: Experimental Analysis And Numerical Modeling, Alaa Waleed Hameed

Dissertations and Theses

Bridges are critical lifeline components of the infrastructure network, enabling economies to function under normal conditions and disaster response and recovery missions to take place after extreme events. Therefore, ensuring satisfactory performance increases community resilience and minimizes both human and economic losses. Coastal bridges, which are the focus of this PhD dissertation, are vulnerable to coastal storms. High failure rates of these bridges during two major hurricane events in the mid-2000s have spurred research activities to better understand the wave-induced forces of coastal bridges.

This PhD research represents a continuation effort to build, implement, and introduce new fundamental concepts and …

Data From: Forest Density Intensifies The Importance Of Snowpack To Growth In Water-Limited Pine Forests, Kelly E. Gleason, John B. Bradford, Anthony W. D’Amato, Shawn Fraver, Brian J. Palik, Michael A. Battaglia

Environmental Science and Management Datasets

Research Study
Warming climate and resulting declines in seasonal snowpack have been associated with drought stress and tree mortality in seasonally snow-covered watersheds worldwide. Meanwhile, increasing forest density has further exacerbated drought stress due to intensified tree-tree competition. Using a uniquely detailed dataset of population-level forest growth (n=2495 sampled trees), we examined how inter-annual variability in growth relates to snow volume across a range of forest densities (e.g., competitive environments) in sites spanning a broad aridity gradient across the United States. Forest growth was positively related to snowpack in water-limited forests located at low latitude, and this relationship was intensified …

A Multivariate Assessment Of Climate Change Projections Over South America Using Cmip5, Valerie Maria Thaler

Dissertations and Theses

A multivariate assessment of climate model projections over South America from the CMIP5 archive is presented. Change in near-surface temperature, precipitation, evapotranspiration, integrated water vapor transport (IVT), sea level pressure, and wind at multiple pressure levels is quantified across the multi-model suite and an assessment of model-to-model agreement on projected change performed. All models project warming by the mid- and late-21st century throughout the continent, with the highest magnitude projected over tropical regions. The CMIP5 models are in strong agreement that precipitation will decrease in all seasons over portions of Patagonia, especially along the northern portions of the current-climate mid-latitude …

An Investigation And Comparison Of Stable Isotopes In Meteoric Waters And Groundwaters From Southern Washington, Emily E. Smoot

University Honors Theses

A main source of freshwater in the Pacific Northwest is the Columbia River Basalt Group aquifer system. The semi-arid region of eastern Washington has undergone heavy groundwater depletion in recent decades due to increasing population and expanding agricultural use. Aggressive mining has resulted in drawdowns of up to 30 meters. By using stable isotopes oxygen-eighteen (¹⁸O) and deuterium (D), this study confines the timing of groundwater precipitation and proposes an explanation for why drawdowns are so significant. The isotopic composition of meteoric water is compared to groundwaters from southeast Washington. The two populations are statistically different (p < 0.001, alpha = 0.05). The isotopic composition of groundwaters from the deepest wells (< -150 m msl) are isotopically lighter than meteoric waters and not achievable by recharge under the current climate. These deep groundwaters are interpreted to have precipitated during the Last Glacial Maximum in the late Pleistocene and finished precipitating roughly 5 ka. Thus, replenishment of the aquifer cannot be expected to keep pace with extraction. Additionally, this research examines the elevation response in the stable isotope signature of meteoric water along the 47° N latitude by computing three lapse rates for ^{18 …}

A Review Of Methodologies Applied For Determining Particulate Matter Characterization In Urban Regions, Garrett F. Diehl

University Honors Theses

This is a literature review on previous research conducted on particulate matter deposited on urban vegetation. This was accomplished by searching six databases, that uncovered 37 peer-reviewed journal articles. The main objective of this review is to present the methodology and findings of the articles analyzed to demonstrate how research in this area of study is being conducted. The findings show that there are variations in the literature and that many variables are not being incorporated into the methods and analyses of particulate matter found on urban vegetation. Understanding how different studies have analyzed particulate matter found on urban vegetation …

Weekend Spanish Immersion Camp: A Non-Traditional Teaching World Language To Middle School American Students, Jorge Oscar Ramirez

Dissertations and Theses

The nature of today's global economy demands that students demonstrate high levels of proficiency in foreign languages. To meet global demand, most countries around the world are including comprehensive world language instruction in their educational systems beginning at an early age. The increasingly multi-lingual nature of culture within and beyond the Unites States. is escalating the importance of immersing students in world languages as early as possible to ensure a high level of written and oral foreign language skill proficiency by the time students graduate from high school. However, most American students do not have the opportunity to study a …

Designing Gates And Architectures For Superconducting Quantum Systems, Sahar Daraeizadeh

Dissertations and Theses

Large-scale quantum computers can solve certain problems that are not tractable by currently available classical computational resources. The building blocks of quantum computers are qubits. Among many different physical realizations for qubits, superconducting qubits are one of the promising candidates to realize gate model quantum computers. In this dissertation, we present new multi-qubit gates for nearest-neighbor superconducting quantum systems. In the absence of a physical hardware, we simulate the dynamics of the quantum system and use the simulated environment as a framework for test, design, and optimization of quantum gates and architectures. We explore three different simulation-based gate design methodologies: …

Mathematical Silences, Matthew Nathan Petersen

Dissertations and Theses

Previous studies have shown that mathematicians employ lengthy silences in their collaborations, contrary to the norms that govern every-day collaborations. Such results shows the relevance of an investigation of silence in mathematical collaboration. This dissertation builds off these results in a series of three papers. The first paper describes a methodology that can be employed in the investigation of silence in mathematical collaboration. The second paper analyses silence in the mathematical collaboration of students in junior-level introductory proof classes. It identifies two forms of mathematical activity, reading and ruminating, that students regularly engage in, and which violate the norms of …

A Multi-Scale Assessment Of The Relationship Between The Riparian Landscape And The Health Of Streams In Portland, Oregon, Dylan Esmonde

Environmental Science and Management Professional Master's Project Reports

The riparian areas adjacent to streams are sensitive and important environments that have a great deal of influence on the overall health of the streams they border. In cities, riparian areas are routinely impacted and degraded by property developments, urban infrastructure, and other alterations to the natural environment. In this study, I worked with the City of Portland to determine how a wide range of landscape features occurring in riparian areas affect the overall health of streams at multiple scales. Data were collected from buffer areas of widths ranging from 15 ft to 500 ft that were digitally generated around …

Words And Diagrams About Rosenzweig's Star, Martin Zwick

Complex Systems Faculty Publications and Presentations

This article explores aspects of Rosenzweig’s Star of Redemption from the perspective of systems theory. Mosès, Pollock, and others have noted the systematic character of the Star. While “systematic” does not mean “systems theoretic,” the philosophical theology of the Star encompasses ideas that are salient in systems theory. The Magen David star to which the title refers, and which deeply structures Rosenzweig’s thought, fits the classic definition of “system” – a set of elements (God, World, Human) and relations between the elements (Creation, Revelation, Redemption). The Yes and No of the elements and their reversals illustrate the bridging of …

Long Term Changes To The Lower Columbia River Estuary (Lcre) Hydrodynamics And Salinity Patterns, Aqeel Al-Bahadily

Dissertations and Theses

Changing the morphological and hydrological conditions of an estuary can affect the estuarine hydrodynamics. The hydrograph of the Lower Columbia River Estuary (LCRE) and its bathymetry have been altered significantly over the past 150 years, such that the spring-freshet has decreased by 40-50% while winter flow has increased by 50%. In addition, the inlet width has been narrowed from 9.7 to 3.2km by the construction of jetties, and the controlling depth of the navigation channel has been deepened from 6 to 13m by continuous dredging. Also, ~70% of the shallow water habitat has been lost due to diking and wetland …

Convex And Nonconvex Optimization Techniques For Multifacility Location And Clustering, Tuyen Dang Thanh Tran

Dissertations and Theses

This thesis contains contributions in two main areas: calculus rules for generalized differentiation and optimization methods for solving nonsmooth nonconvex problems with applications to multifacility location and clustering. A variational geometric approach is used for developing calculus rules for subgradients and Fenchel conjugates of convex functions that are not necessarily differentiable in locally convex topological and Banach spaces. These calculus rules are useful for further applications to nonsmooth optimization from both theoretical and numerical aspects. Next, we consider optimization methods for solving nonsmooth optimization problems in which the objective functions are not necessarily convex. We particularly focus on the class …

From Theory To Practice: Interdisciplinary Science In Undergraduate Education, Brie Tripp

Dissertations and Theses

Science has undergone a major transformation in the 20th and 21st centuries with new fields emerging at the intersection of disciplines, such as bioethics, bioinformatics, and chemical ecology. Yet, opportunities to engage with interdisciplinary science, and the skills needed to work in these fields, are largely absent from undergraduate biology classrooms. As a consequence, students are potentially deprived of opportunities to think interdisciplinarily and engage with real-world issues that often necessitate interdisciplinary efforts. To be informed citizens in society and forward-thinking scientists in the workforce, undergraduate students will undoubtedly benefit from exposure to these interdisciplinary science experiences.

Given these considerations, …

Vulnerability Of Small Forest Patches To Fire In The Paraiba Do Sul River Valley, Southeast Brazil: Implications For Restoration Of The Atlantic Forest Biome, Betina J. Guedes, Klecia G. Massi, Cody Evers, Max Nielsen-Pincus

Environmental Science and Management Faculty Publications and Presentations

The Atlantic Forest biome, a biodiversity hotspot historically threatened by deforestation and human disturbance, has recently seen a net gain in native forest cover due to changes in land use, enactment of new laws, and substantial investment in restoration. Like many South American and global ecosystems, the Atlantic Forest biome has also experienced an increase in area burned by wildfire largely due to human ignitions, which threatens these gains. Our objective was to understand the vulnerability of protected areas and small patches of neotropical forest to fire in the Paraíba do Sul River Valley, Brazil, a region within the Atlantic …

Improving The Understanding Of Jet Grooming In Perturbation Theory, Andrew J. Larkoski

Portland Institute for Computational Science Publications

Jet grooming has emerged as a necessary and powerful tool in a precision jet physics program. In this paper, we present three results on jet grooming in perturbation theory, focusing on heavy jet mass in e⁺e⁻ → hadrons collisions, groomed with the modified mass drop tagger. First, we calculate the analytic cross section at leading-order. Second, using the leading-order result and numerical results through next-to-next-to-leading order, we show that cusps in the distribution on the interior of phase space at leading-order are softened at higher orders. Finally, using analytic and numerical results, we show that terms that …

Work-In-Progress: Implementing Sophomore Cornerstone Courses In Electrical And Computer Engineering, Branimir Pejcinovic, Melinda Holtzman, Phillip Wong

Electrical and Computer Engineering Faculty Publications and Presentations

Many engineering programs have significant project-based courses in the freshman and senior years. The project component in our freshman year-long sequence evolves from minimally structured projects, like designing and building Rube-Goldberg contraptions, to more complex microcontroller-based projects where formal tools for teamwork and project management are introduced. However, we do not yet enforce strict adherence to procedures and processes in the freshman year. This is unlike the senior capstone, where the expectation is that students will not only be familiar with these methods but will use them effectively throughout their projects. This presents an obvious problem: what happens in the …