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A Composite Narxnn Approach To Photovoltaic Power Forecasting With Integrated Weather Inputs And Uncertainty Quantification, Denisse Urenda Castañeda, Sharmin Abdullah, Jackson Morgan, Honglun Xu, Michael Pokojovy, Tzu-Liang Tseng Jan 2026

A Composite Narxnn Approach To Photovoltaic Power Forecasting With Integrated Weather Inputs And Uncertainty Quantification, Denisse Urenda Castañeda, Sharmin Abdullah, Jackson Morgan, Honglun Xu, Michael Pokojovy, Tzu-Liang Tseng

Mathematics & Statistics Faculty Publications

Solar photovoltaics (PV) are a major source of sustainable energy. Yet, their power output is highly sensitive to environmental variability, particularly solar irradiance, cloud cover, wind, and temperature. Accurate forecasting of PV power is essential for efficient grid integration and energy planning, especially in applications requiring reliable longer-term forecasting rather than one-step-ahead predictions. This study presents a PV power forecasting approach using Nonlinear Autoregressive models with Exogenous Inputs (NARX), integrating large-scale numerical weather historical data as exogenous variables. Although NARX models effectively capture temporal dependencies, they can become overly dependent on historical power values, reducing responsiveness to real-time weather changes. …


A New Parallel-In-Time Direct Inverse Method For Nonlinear Differential Equations, Nail K. Yamaleev, Subhash Paudel Jan 2026

A New Parallel-In-Time Direct Inverse Method For Nonlinear Differential Equations, Nail K. Yamaleev, Subhash Paudel

Mathematics & Statistics Faculty Publications

We propose a new method for parallelization of the first-order backward difference discretization (BDF1) of the first-order time derivative in nonlinear partial differential equations, such as conservation law equations. The time derivative term is discretized by using the method of lines based on the implicit BDF1 scheme, while the inviscid and viscous terms are approximated by conventional 2nd-order central discretizations of the 1st- and 2nd-order derivatives in each spatial direction. The global system of nonlinear discrete equations in the space-time domain is solved by the Newton method for all time levels simultaneously. For the BDF1 discretization, this all-at-once system at …


The Adaptive Solution Of High-Frequency Helmholtz Equations Via Multi-Grade Deep Learning, Peiyao Zhao, Rui Wang, Tingting Wu, Yuesheng Xu Jan 2026

The Adaptive Solution Of High-Frequency Helmholtz Equations Via Multi-Grade Deep Learning, Peiyao Zhao, Rui Wang, Tingting Wu, Yuesheng Xu

Mathematics & Statistics Faculty Publications

The Helmholtz equation is fundamental for modeling wave propagation in acoustics, electromagnetics, and geophysics; however, high-frequency regimes remain notoriously difficult due to the severe numerical “pollution effect.” We propose FD-MGDL, an adaptive framework that synergizes finite difference discretizations with Multi-Grade Deep Learning (MGDL) to efficiently resolve high-frequency wavefields. Unlike standard physics-informed neural networks (PINNs), which frequently suffer from spectral bias and heavy automatic differentiation overhead, FD-MGDL employs a progressive, grade-wise training strategy that incrementally incorporates shallow sub-networks to refine residual errors. By leveraging ReLU activations in refinement grades, the framework reformulates the highly non-convex global optimization problem into a sequence …


Ocular Surface Disease Following Lasik And Cataract Surgery: A Review Of Their Interrelated Complications, Matthew D. Spangler, Nila Kirupaharan, John D. Sheppard Jan 2026

Ocular Surface Disease Following Lasik And Cataract Surgery: A Review Of Their Interrelated Complications, Matthew D. Spangler, Nila Kirupaharan, John D. Sheppard

Department of Ophthalmology Faculty Publications

Background: Ocular surface disease is a multifactorial condition that is very commonly caused by dry eye disease (DED). Ophthalmic procedures intended to improve visual outcomes, laser-assisted in situ keratomileusis (LASIK) and cataract surgery, can paradoxically cause or exacerbate underlying ocular surface disease. This results in worsening vision and quality of life.

Areas covered: This review examines the pathophysiological mechanisms contributing to ocular surface disease development following LASIK and cataract surgery. Both procedures are associated with the transection of corneal nerves, leading to decreased tear production, surface instability, altered neurotrophin production, and impairment of the blink reflex. Furthermore, these incisional procedures …


Steady As She Goes: Remote Work Benefits Daily Goal Progress Through Reduced Energy Variability, Andrew A. Bennett, Kathleen R. Keeler, Emily D. Campion, Sheila K. Keener Jan 2026

Steady As She Goes: Remote Work Benefits Daily Goal Progress Through Reduced Energy Variability, Andrew A. Bennett, Kathleen R. Keeler, Emily D. Campion, Sheila K. Keener

Management Faculty Publications

As the prevalence and allowance of remote and hybrid work evolves, research has shown consistently mixed findings about how work location is related to worker energy and perceptions of daily performance. We aim to resolve this ambiguity by integrating affective events theory with ideas about emotion dynamics to develop new theorizing explaining why energy variability, rather than mean energy level, is an important predictor of daily goal progress. We test our hypotheses using a sample of 219 employees from one organization allowing remote and hybrid work, capturing individual hourly energy levels for five consecutive workdays (4,812 hourly observations). Our …


The Emerging Social Media Water Cooler? Motivations For Reddit Use In A Niche League, Jan Boehmer, Brendan O'Hallarn Jan 2026

The Emerging Social Media Water Cooler? Motivations For Reddit Use In A Niche League, Jan Boehmer, Brendan O'Hallarn

Communication & Theatre Arts Faculty Publications

Social media play a key role in sport marketing—with athletes, teams, and leagues directly engaging with their audiences. While Facebook, Instagram, and Twitter have received much attention in the sport marketing and communication literature, research on Reddit is scant. This is particularly noteworthy, as the platform is growing rapidly and promises utility for users with nonmainstream interests to find and engage with each other. This study employs a uses and gratifications approach to investigate how prevalent Reddit use is among fans of the United Football League (UFL), what motivates users to engage with the platform, and whether Reddit use leads …


Stages Of Being Foreign As Portrayed In Daughter Of Keltoum And Lost Birds, Fran Hassencahl Jan 2026

Stages Of Being Foreign As Portrayed In Daughter Of Keltoum And Lost Birds, Fran Hassencahl

Communication & Theatre Arts Faculty Publications

In this paper, I use the intercultural communication model, The Stages of Being Foreign, developed by anthropologist Oberg (1960) and modified by Gullahorn & Gullahorn (1963), Lewis & Jungman (1986), and Ward, Bochner, and Furnham (2001) to explain the experience of culture shock. This model describes the stages that individuals experience when they leave, either voluntarily or involuntarily, their home country/culture and must adapt to a new culture. These stages as described by Oberg are a preliminary stage (a spectator stage), an increasing participation stage, the pit of the culture shock stage, the adaptation stage, and for some migrants a …


Enlem: Ensemble Learning-Based Model To Detect Phishing Websites, Most Nilufa Yeasmin, Md Abu Rumman Refat, Bikash Chandra Singh, Zulfikar Alom, Zeyar Aung, Mohammad Azim Jan 2026

Enlem: Ensemble Learning-Based Model To Detect Phishing Websites, Most Nilufa Yeasmin, Md Abu Rumman Refat, Bikash Chandra Singh, Zulfikar Alom, Zeyar Aung, Mohammad Azim

School of Cybersecurity Faculty Publications

Phishing involves manipulating individuals into revealing private data, e.g., user IDs, bank details, and passwords. The observed surge in fraud is related to increased deception, impersonation, and advanced online attacks. Thus, effective phishing detection methods are required to mitigate escalating global phishing threats. Existing methods (e.g., heuristics-based, signature-based, and visual similarity-based methods) attempt to detect phishing sites, and machine learning (ML) and deep learning (DL) methods are effective in the cybersecurity context in terms of learning from data, offering insights, and forecasting. However, independent ML algorithms are limited when handling complex data, and DL techniques surpass traditional ML methods in …


Toward Secure And Practical Machine Learning-Based Access Control: A Framework With Real-World Constraints And Adversarial Analysis, Olusesi Balogun, Mohammad Ghasemigol, Zhipeng Cai, Daniel Takabi Jan 2026

Toward Secure And Practical Machine Learning-Based Access Control: A Framework With Real-World Constraints And Adversarial Analysis, Olusesi Balogun, Mohammad Ghasemigol, Zhipeng Cai, Daniel Takabi

School of Cybersecurity Faculty Publications

Attribute-Based Access Control (ABAC) frameworks coordinate access requests based on subject, object, and environment attributes, as well as policy rules, and are widely used in corporate security systems. Recently, machine learning has been applied to ABAC to address policy-generation imbalances, misassigned privileges, and attribute leakages. However, existing MLBAC techniques do not consider the structural constraints and attribute interdependencies present in traditional ABAC systems. Moreover, these frameworks have not been extensively evaluated under black-box attack scenarios. To address these gaps, we propose extensions to MLBAC that integrate structural constraints, attribute dynamism, and attribute weighting into the MLBAC objective function. Additionally, we …


A Phenomenological Analysis Of Sense Of Belonging Among Community College Educators, Muhammad Owais Aziz Jan 2026

A Phenomenological Analysis Of Sense Of Belonging Among Community College Educators, Muhammad Owais Aziz

EVMS School of Health Professions Theses & Dissertations

This phenomenological study explored the complex phenomenon of sense of belonging (SB) among diverse health professions educators (HPEs) and non-health professions educators (non-HPEs) at a Canadian community college. SB, as a dynamic construct shaped by an individual's perception of being valued and respected, is influenced by personal preferences and by complex interactions with the individual's surroundings. To better understand SB and foster a more inclusive environment for diverse educators, it is necessary to investigate SB among these educators. This qualitative study used eleven semi-structured interviews and seven steps of data analysis. The results of this study can inform strategies, policies, …


A Comprehensive Overview Of Neurophysiological Correlates Of Cognitive Impairment In Amyotrophic Lateral Sclerosis, Seyyed Bahram Borgheai, Brie E. Achorn, Alyssa H. Zisk, Sarah M. Hosni, Karl E. G. Richter, Frank S. Menniti, Yalda Shahriari Jan 2026

A Comprehensive Overview Of Neurophysiological Correlates Of Cognitive Impairment In Amyotrophic Lateral Sclerosis, Seyyed Bahram Borgheai, Brie E. Achorn, Alyssa H. Zisk, Sarah M. Hosni, Karl E. G. Richter, Frank S. Menniti, Yalda Shahriari

Computer Science Faculty Publications

Amyotrophic lateral sclerosis (ALS) is a progressive neurodegenerative disease that leads to the gradual loss of motor control, typically resulting in paralysis and death within 3 to 5 years of diagnosis. ALS shares neuropathological and genetic associations with fronto-temporal dementia (FTD), a neurodegenerative condition primarily impacting cognitive functions. These two conditions are increasingly viewed as manifestations of a single molecular disease process that affects distinct brain systems, impacting motor neuronal pathways in ALS and fronto-cortical functions in FTD. However, this simple dichotomy belies the complexity of these conditions. In particular, patients with primary motor ALS can also experience significant cognitive …


Sage: Spatially Aware Gene Selection And Dual-View Embedding Fusion For Domain Identification In Spatial Transcriptomics, Yi He, Yunpei Xu, Liqing Ding, Hong-Dong Li, Yaohang Li, Shaokai Wang Jan 2026

Sage: Spatially Aware Gene Selection And Dual-View Embedding Fusion For Domain Identification In Spatial Transcriptomics, Yi He, Yunpei Xu, Liqing Ding, Hong-Dong Li, Yaohang Li, Shaokai Wang

Computer Science Faculty Publications

Despite enabling high-resolution mapping of gene expression within tissues, spatial transcriptomics (ST) still faces challenges in accurately segmenting spatial domains due to complex tissue architecture and limitations of current methods. Most approaches rely on local spatial priors, lack gene-level interpretability, and fall short in capturing structure-discriminative genes or long-range functional relationships, limiting their ability to resolve biologically meaningful architectures. We present Spatially Aware Gene selection and dual-view Embedding fusion (SAGE), a unified and reproducible framework for domain identification in spatial transcriptomics that combines topic-driven gene selection with dual-view embedding fusion to address these gaps. SAGE integrates non-negative matrix factorization (NMF)-based …


Quantum Machine Learning Models: Principles, Frameworks, And Computational Challenges, K. A. Jayabalaji, S. Venkata Anand, Dineshkumar Rajendran, Prasanta Chatterjee Biswas, Sardor Omonov, Rubaid Ashfaq Jan 2026

Quantum Machine Learning Models: Principles, Frameworks, And Computational Challenges, K. A. Jayabalaji, S. Venkata Anand, Dineshkumar Rajendran, Prasanta Chatterjee Biswas, Sardor Omonov, Rubaid Ashfaq

Computer Science Faculty Publications

Quantum machine learning (QML) has become an optimistic avenue of harnessing quantum computation in data-driven modeling, especially of issues with high dimensionality and complicated correlations. Current methods are generally based on fixed or over-parameterized quantum circuits, and hence restricted to scalability as well as unproductive optimization in real-world hardware. This chapter introduces a hybrid quantum-classical learning system that is adaptive and provides principled quantum data encoding, architecture-conscious variational circuit design and resource-optimal optimization. The technique is based on the concepts of quantum architecture search and subspace-preserving transformations to trade expressiveness with trainability, and discretize the quantum model into a classical …


Examining Inclusive Computing Education For Blind Students In India, Akshay Kolgar Nayak, Yash Prakash, Md Javedul Ferdous, Sampath Jayarathna, Hae-Na Lee, Vikas Ashok Jan 2026

Examining Inclusive Computing Education For Blind Students In India, Akshay Kolgar Nayak, Yash Prakash, Md Javedul Ferdous, Sampath Jayarathna, Hae-Na Lee, Vikas Ashok

Computer Science Faculty Publications

The growing demand for computer professionals, driven by the expanding Information Technology industry, has led to numerous inclusive computing education efforts. These efforts have even included blind or visually-impaired (BVI) students, who are being increasingly encouraged to pursue education and a career in computing, despite the visually-oriented nature of the discipline. Extant literature has predominantly focused on identifying and addressing the accessibility barriers faced by BVI students to promote more inclusive learning environments. While few studies have also investigated the accessibility of computing education from the perspectives of BVI learners and instructors, these have been primarily situated in the Global …


The Privacy Paradox Of Llms: User Perceptions And The Reality Of Pii Leakage, Shuai Cheng, Haitao Xu, Shu Meng, Shuai Hao, Chuan Yue, Zhao Li Jan 2026

The Privacy Paradox Of Llms: User Perceptions And The Reality Of Pii Leakage, Shuai Cheng, Haitao Xu, Shu Meng, Shuai Hao, Chuan Yue, Zhao Li

Computer Science Faculty Publications

Large language models (LLMs) are increasingly deployed, yet they introduce significant privacy risks by disclosing personally identifiable information (PII) during interactions. Although prior work has demonstrated the feasibility of extracting PII from LLMs, no comprehensive study has evaluated the actual extent of PII leakage across mainstream LLMs or investigated user perceptions, literacy, and behavioral responses to these risks. To address these gaps, we conduct a large-scale evaluation of PII leakage in popular LLMs, demonstrating that attackers can extract email addresses and phone numbers with high success rates. Through a mixed-methods study involving 20 interviews and 204 survey participants, we identify …


An Explainable Transformer Framework For Sentiment Analysis In Aviation Workforce Data, Sovon Chakraborty, Protiva Das, Fahmid Al Farid, Fuyad Hasan Bhoyan, Farig Yousuf Sadeque, Jia Uddin, Hezerul Abdul Karim Jan 2026

An Explainable Transformer Framework For Sentiment Analysis In Aviation Workforce Data, Sovon Chakraborty, Protiva Das, Fahmid Al Farid, Fuyad Hasan Bhoyan, Farig Yousuf Sadeque, Jia Uddin, Hezerul Abdul Karim

Computer Science Faculty Publications

Aviation is one of the predominant sectors that contribute significantly to the global economy. With the advent of technology, this industry is witnessing a paradigm shift towards data-driven approaches. The morale of the airline employees is barely noticed, which causes fatigue and depression. Furthermore, these mental health issues can be active reasons for destructive accidents. In this research, the authors are focused on collecting insightful information on aviation employees from Glassdoor.com. Moreover, the authors focus on analyzing the sentiments of the employees of renowned aviation companies. Primarily, the authors scraped necessary data from Glassdoor.com and created a dataset named JetJobJoy …


Stochastic Fractional-Order Memristive Fuzzy Bam Neural Networks With Time Delays And Leakage Term For Finite-Time Stability Analysis, J. Kumar, M. Syed Ali, Sumaya Sanober, Mohammad Yarish, Abeer M. Alotaibi, Tarek F. Ibrahim Jan 2026

Stochastic Fractional-Order Memristive Fuzzy Bam Neural Networks With Time Delays And Leakage Term For Finite-Time Stability Analysis, J. Kumar, M. Syed Ali, Sumaya Sanober, Mohammad Yarish, Abeer M. Alotaibi, Tarek F. Ibrahim

Computer Science Faculty Publications

In this study, a finite-time stability analysis with time delays and a leakage term is conducted on stochastic fractional-order memristive fuzzy BAM neural networks. FOMFBAMNNs are developed using set-valued map theories as well as differential inclusion. We obtained several significant adequate criteria of uniform stability in the mean square of such networks by using analytical methods and inequality approaches, such as Cauchy–Schwarz inequality and Burkholder–Davis–Gundy inequality. In addition to examining two different fractional-order derivatives between the U-layer and V-layer synchronously with fractional order, the existence, uniqueness, and stability of its equilibrium point are also shown ½ ≤ α ≤ 1. …


Towards Supporting Real-Time Estimation Of Vehicle Fuel Consumption And Co2 Emissions In Smart City Applications, Abrar Alali, Stephan Olariu Jan 2026

Towards Supporting Real-Time Estimation Of Vehicle Fuel Consumption And Co2 Emissions In Smart City Applications, Abrar Alali, Stephan Olariu

Computer Science Faculty Publications

This paper evaluates a simplified physics-based energy demand model designed to estimate vehicle fuel consumption and CO₂ emissions—a critical tool for sustainable transportation planning and smart city applications. Unlike data-driven regression models that lack generalizability for user-defined conditions or complex physics-based approaches that rely on extensive, often proprietary data, the simplified model is distinguished by its minimal parameter requirements, depending primarily on a single, overarching powertrain efficiency value. A key contribution is the comprehensive empirical evaluation of the simplified model against official Environmental Protection Agency (EPA) test data across multiple driving cycles and vehicle types, providing a rigorous validation previously …


Maxgrnet: A Multi-Axis Vision Transformer With Improved Generalization For Eye Disease Classification Using Explainable Ai With Insertion-Deletion Operations On Fundus Images, Md Mehedi Hasan Santo, Fuyad Hasan Bhoyan, Fuad Ibne Jashim Farhad, Fahmid Al Farid, Sovon Chakraborty, Md Humaion Kabir Mehedi, Jia Uddin, Hezerul Bin Abdul Karim Jan 2026

Maxgrnet: A Multi-Axis Vision Transformer With Improved Generalization For Eye Disease Classification Using Explainable Ai With Insertion-Deletion Operations On Fundus Images, Md Mehedi Hasan Santo, Fuyad Hasan Bhoyan, Fuad Ibne Jashim Farhad, Fahmid Al Farid, Sovon Chakraborty, Md Humaion Kabir Mehedi, Jia Uddin, Hezerul Bin Abdul Karim

Computer Science Faculty Publications

Eye diseases, including diabetic retinopathy (DR), glaucoma, and cataracts, represent a major global health concern and can lead to severe visual impairment or blindness if not identified in a timely manner. This study proposes a novel eye disease classification framework based on a multi-axis vision transformer (MaxViT) applied to color fundus images with Explainable Artificial Intelligence (XAI) techniques to enhance model transparency. The proposed architecture integrates transformer-based attention mechanisms with Global Response Normalization (GRN)-based multi-layer perceptron (MLP) layers to capture complex spatial and contextual relationships within fundus images effectively. The model was evaluated on a publicly available eye disease classification …


Biosecure-Llm Framework: Protecting Llms From Cyberbiosecurity Threats And The Case For Independent Ai Safety Governance, Xavier-Lewis Palmer, Lucas Potter, Srdjan Lesaja, Sotirios Karathanasis, Mohammad Ghasemigol Jan 2026

Biosecure-Llm Framework: Protecting Llms From Cyberbiosecurity Threats And The Case For Independent Ai Safety Governance, Xavier-Lewis Palmer, Lucas Potter, Srdjan Lesaja, Sotirios Karathanasis, Mohammad Ghasemigol

Computer Science Faculty Publications

Large Language Models (LLMs) are becoming critical infrastructure in scientific, healthcare, and governmental contexts. As frontier AI laboratories increasingly partner with government agencies, a fundamental question arises: Who should control the safety and policy-enforcement layers that constrain model behavior? Current safety mechanisms (LLM guardrails) are typically designed for generic "harmlessness" and operate by detecting semantic patterns and refusing requests. However, they are inadequate governance instruments because they cannot implement auditable, domain-specific controls tied to external regulatory policy objects (e.g., control lists or rules governing personally identifying information). Even a perfectly aligned model is not able to express institution-specific policy without …


Variational Autoencoder Inverse Mapper For Extraction Of Compton Form Factors: Benchmarks And Conditional Learning, Douglas Adams, Md Fayaz Bin Hossen, Joshua Bautista, Gia-Wei Chern, Simonetta Liuti, Marie Boër, Marija Čuić, Michael Engelhardt, Gary R. Goldstein, Huey-Wen Lin, Yaohang Li Jan 2026

Variational Autoencoder Inverse Mapper For Extraction Of Compton Form Factors: Benchmarks And Conditional Learning, Douglas Adams, Md Fayaz Bin Hossen, Joshua Bautista, Gia-Wei Chern, Simonetta Liuti, Marie Boër, Marija Čuić, Michael Engelhardt, Gary R. Goldstein, Huey-Wen Lin, Yaohang Li

Computer Science Faculty Publications

Deeply virtual exclusive scattering processes (DVES) serve as precise probes of nucleon quark and gluon distributions in coordinate space. These distributions are derived from generalized parton distributions (GPDs) via Fourier transform relative to proton momentum transfer. QCD factorization theorems enable DVES to be parameterized by Compton form factors (CFFs), which are convolutions of GPDs with perturbatively calculable kernels. Accurate extraction of CFFs from DVCS, benefiting from interference with the Bethe–Heitler (BH) process and a simpler final state structure, is essential for inferring GPDs. This paper focuses on extracting CFFs from DVCS data using a variational autoencoder inverse mapper (VAIM) and …


Finding The Signal In The Noise: An Exploratory Study On Assessing The Effectiveness Of Ai And Accessibility Forums For Blind Users' Support Needs, Satwik Ram Kodandaram, Jiawei Zhou, Xiaojun Bi, Iv Ramakrishnan, Vikas Ashok Jan 2026

Finding The Signal In The Noise: An Exploratory Study On Assessing The Effectiveness Of Ai And Accessibility Forums For Blind Users' Support Needs, Satwik Ram Kodandaram, Jiawei Zhou, Xiaojun Bi, Iv Ramakrishnan, Vikas Ashok

Computer Science Faculty Publications

Accessibility forums and, more recently, generative AI tools have become vital resources for blind users seeking solutions to computer-interaction issues and learning about new assistive technologies, screen reader features, tutorials, and software updates. Understanding user experiences with these resources is essential for identifying and addressing persistent support gaps. Towards this, we interviewed 14 blind users who regularly engage with forums and GenAI tools. Findings revealed that forums often overwhelm users with multiple overlapping topics, redundant or irrelevant content, and fragmented responses that must be mentally pieced together, increasing cognitive load. GenAI tools, while offering more direct assistance, introduce new barriers …


Open Scholarly Information Systems: Status Quo, Challenges, Opportunities, Hannah Bast, Guillaume Cabanac, Paolo Manghi, Jian Wu, Marcel R. Ackermann Jan 2026

Open Scholarly Information Systems: Status Quo, Challenges, Opportunities, Hannah Bast, Guillaume Cabanac, Paolo Manghi, Jian Wu, Marcel R. Ackermann

Computer Science Faculty Publications

Over the past 30 years, a rich ecosystem of scholarly information systems has developed that openly provide their services to the scientific community. These systems include aggregators of bibliographic metadata (e.g., DBLP, OpenCitations, OpenAIRE Graph, OpenAlex, ORKG, Semantic Scholar, CiteSeerX, and CORE); publication, data, and software repositories (e.g., Arxiv.org, Figshare, Zenodo, Software Heritage, and Dataverse); and PID authorities (e.g., ORCID, ROR, Crossref, and DataCite). This interdisciplinary Dagstuhl Seminar "Open Scholarly Information Systems: Status Quo, Challenges, Opportunities" (25381) was the first of its kind to bring together practitioners from this ecosystem, as well as researchers investigating related questions or relying on …


Explainable Convolutional Neural Network Model Provides An Alternative Genome-Wide Association Perspective On Mutations In Sars-Cov-2, Parisa C. Hatami, Richard Annan, Luis Miranda, Jane L. Gorman, Mengjun Xie, Letu Qingge, Hong Qin Jan 2026

Explainable Convolutional Neural Network Model Provides An Alternative Genome-Wide Association Perspective On Mutations In Sars-Cov-2, Parisa C. Hatami, Richard Annan, Luis Miranda, Jane L. Gorman, Mengjun Xie, Letu Qingge, Hong Qin

Computer Science Faculty Publications

Identifying informative genomic features in SARS-CoV-2 can help clarify patterns of viral evolution. In this study, we developed an explainable convolutional neural network (CNN) model to classify SARS-CoV-2 genomic sequences into the WHO-designated Variants of Concern (VOCs), Alpha, Beta, Gamma, Delta, and Omicron. Using a balanced dataset of genomes, the classification CNN achieved 99.96% accuracy on the held-out test set. To interpret the model’s predictions, we applied SHapley Additive exPlanations (SHAP) to estimate the contribution of each nucleotide position to VOC-label prediction and compared aggregated attributions with a chi-square GWAS baseline applied to the same categorical labels. SHAP prioritized several …


Privacy-Preserving Federated Learning With Optimized Ensemble Weighting And Knowledge Distillation For Covid-19 Detection From Non-Iid Medical Imaging Data, Richard Annan, Hong Qin, Robert Newman, Madhuri Siddula, Letu Qingge Jan 2026

Privacy-Preserving Federated Learning With Optimized Ensemble Weighting And Knowledge Distillation For Covid-19 Detection From Non-Iid Medical Imaging Data, Richard Annan, Hong Qin, Robert Newman, Madhuri Siddula, Letu Qingge

Computer Science Faculty Publications

Medical imaging enables rapid and accurate diagnosis of COVID-19, with CT scans proving especially effective. However, data privacy concerns limit collaborative model development across hospitals. To address this issue, we introduce a novel federated learning framework. It is referred to as Independent Knowledge Distillation with post-Ensemble Federated Learning (IKDEFL). Differential Privacy (DP) is integrated into the framework to improve privacy guarantees. Three DP mechanisms are evaluated. These include Fixed Gaussian, Gaussian Adaptive, and Tree Adaptive. The evaluation has been conducted on heterogeneous and Non-Independent and Identically Distributed (Non-IID) datasets. These datasets reflect real-world hospital scenarios. Results show that IKDEFL significantly …


Toward An Event-Level Analysis Of Hadron Structure Using Differential Programming, Kevin Braga, Markus Diefenthaler, Steven Goldenberg, Daniel Lersch, Yaohang Li, Jian-Wei Qiu, Kishansingh Rajput, Felix Ringer, Nobuo Sato, Malachi Schram Jan 2026

Toward An Event-Level Analysis Of Hadron Structure Using Differential Programming, Kevin Braga, Markus Diefenthaler, Steven Goldenberg, Daniel Lersch, Yaohang Li, Jian-Wei Qiu, Kishansingh Rajput, Felix Ringer, Nobuo Sato, Malachi Schram

Computer Science Faculty Publications

Reconstructing the internal properties of hadrons in terms of fundamental quark and gluon degrees of freedom is a central goal in nuclear and particle physics. This effort lies at the core of major experimental programs, such as the Jefferson Lab 12 GeV program and the upcoming Electron-Ion Collider. A primary challenge is the inherent inverse problem: converting large-scale observational data from collision events into the fundamental quantum correlation functions (QCFs) that characterize the microscopic structure of hadronic systems within the theory of QCD. Recent advances in scientific computing and machine learning have opened new avenues for addressing this challenge using …


Lost In Instructions: Study Of Blind Users' Experiences With Diy Manuals And Ai-Rewritten Instructions For Assembly, Operation, And Troubleshooting Of Tangible Products, Monalika Padma Reddy, Aruna Balasubramanian, Jiawei Zhou, Xiaojun Bi, Iv Ramakrishnan, Vikas Ashok Jan 2026

Lost In Instructions: Study Of Blind Users' Experiences With Diy Manuals And Ai-Rewritten Instructions For Assembly, Operation, And Troubleshooting Of Tangible Products, Monalika Padma Reddy, Aruna Balasubramanian, Jiawei Zhou, Xiaojun Bi, Iv Ramakrishnan, Vikas Ashok

Computer Science Faculty Publications

AI tools like ChatGPT and Be-My-AI are increasingly being used by blind individuals. Although prior work has explored their use in some Do-It-Yourself (DIY) tasks by blind individuals, little is known about how they use these tools and the available product-manual resources to assemble, operate, and troubleshoot physical/tangible products – tasks requiring spatial reasoning, structural understanding, and precise execution. We address this knowledge gap via an interview study and a usability study with blind participants, investigating how they leverage AI tools and product manuals for DIY tasks with physical products. Findings show that manuals are essential resources, but product-manual instructions …


Guidelines For Automatic Grading Of Student Essays Using Large Language Models, Diwakar Yalpi, Sruta Keerti Kasula, Ravi Mukkamala Jan 2026

Guidelines For Automatic Grading Of Student Essays Using Large Language Models, Diwakar Yalpi, Sruta Keerti Kasula, Ravi Mukkamala

Computer Science Faculty Publications

Automated essay evaluation using large language models (LLMs) has emerged as a promising approach to support scalable and consistent educational assessment. However, the effectiveness of LLM-based grading varies significantly across evaluation dimensions and is highly influenced by prompt design and model selection. In this study, we evaluate five state-of-the-art LLMs across five rubric-based categories: Relevance to Question, Reasoning and Critical Thinking, Evidence and Examples, Organization, and Clarity and Writing Quality. We systematically investigate the impact of three prompting strategies, including rubric-only prompting, exemplar-based prompting (with and without rubric guidance)(Original and Refined prompt designs) incorporating structured instructions. Additionally, a prompt ablation …


An Investigation Of Federated Gnns Under Aggregation, Data Poisoning, And Differential Privacy For Icu Length-Of-Stay Prediction, Shakib Mahmud Dipto, Soumya Banerjee, Sandip Roy, Ahmad F. Al Musawi, Preetam Ghosh, Sachin Shetty, Pratip Rana Jan 2026

An Investigation Of Federated Gnns Under Aggregation, Data Poisoning, And Differential Privacy For Icu Length-Of-Stay Prediction, Shakib Mahmud Dipto, Soumya Banerjee, Sandip Roy, Ahmad F. Al Musawi, Preetam Ghosh, Sachin Shetty, Pratip Rana

Computer Science Faculty Publications

Accurate prediction of ICU Length of Stay (LoS) is essential for clinical decision-making and healthcare resource management. Graph Neural Networks (GNNs), such as GraphSAGE, offer a natural fit by capturing patient data from Electronic Health Records (EHRs) through graph structures. However, the distributed and sensitive nature of this data raises both privacy and legal concerns regarding the aggregation and training of GNN models. This additionally leads to issues with data imbalance and model robustness. In this study, we perform an analysis of the Federated Graph Neural Network (GNN-FL) framework to enable decentralized learning on EHRs derived from the MIMIC-III dataset. …


Toward A Centralized Cross Domain Database For Reproducibility And Replicability Studies, Rochana R. Obadage, Sarah Rajtmajer, Jian Wu Jan 2026

Toward A Centralized Cross Domain Database For Reproducibility And Replicability Studies, Rochana R. Obadage, Sarah Rajtmajer, Jian Wu

Computer Science Faculty Publications

Reproducibility and replicability (R&R) are structural properties of scientific knowledge, yet existing R&R evidence remains fragmented across domains and initiatives. We present an ongoing effort to develop a centralized, cross-domain database of R&R studies that links published works to their corresponding R&R attempts and supporting assessments. Bibliographic metadata and title-based matching through scholarly indexing services identify canonical records and persistent identifiers. A heuristic, uncertainty-aware matching algorithm supports intra-source and inter-source deduplication, complemented by manual review of ambiguous cases. A unified schema accommodates heterogeneous assessment frameworks and records original studies, R&R studies, assessments, aggregated summaries, and source provenance. The database currently …