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Endocrine Disruptors And Obesity: An Examination Of Selected Persistent Organic Pollutants In The Nhanes 1999-2002 Data, Mai A. Elobeid, Miguel A. Padilla, David W. Brock, Douglas M. Ruden, David B. Allison

Psychology Faculty Publications

Recent evidence suggests that endocrine disrupting chemicals (EDCs) may cause perturbations in endogenous hormonal regulation that predispose to weight gain. Using data from NHANES (1999-2002), we investigated the association between body mass index (BMI), waist circumference (WC) and selected persistent organic pollutants (POPs) via multiple linear regressions. Consistent interaction was found between gender, ln oxychlordane and ln p,p' DDT. Also, we found an association between WC and ln oxychlordane and ln hpcdd in subjects with detectable levels of POPs, whereas an association between WC and ln p,p' DDT was observed in all subjects. Furthermore, ln Ocdd showed an increase with …

Adjacent Slice Prostate Cancer Prediction To Inform Maldi Imaging Biomarker Analysis, Shao-Hui Chuang, Xiaoyan Sun, Lisa Cazares, Julius Nyalwidhe, Dean Troyer, O. John Semmes, Jiang Li, Frederic D. Mckenzie, Nico Karssemeijer (Ed.), Ronald M. Summers (Ed.)

Electrical & Computer Engineering Faculty Publications

Prostate cancer is the second most common type of cancer among men in US [1]. Traditionally, prostate cancer diagnosis is made by the analysis of prostate-specific antigen (PSA) levels and histopathological images of biopsy samples under microscopes. Proteomic biomarkers can improve upon these methods. MALDI molecular spectra imaging is used to visualize protein/peptide concentrations across biopsy samples to search for biomarker candidates. Unfortunately, traditional processing methods require histopathological examination on one slice of a biopsy sample while the adjacent slice is subjected to the tissue destroying desorption and ionization processes of MALDI. The highest confidence tumor regions gained from the …

Saving Saba Bank: Policy Implications Of Biodiversity Studies, Paul C. Hoetjes, Kent E. Carpenter

Biological Sciences Faculty Publications

Saba Bank has always been an area of special importance to the neighboring island of Saba in the Netherlands Antilles. Sabans traditionally fished on the Bank as far back as 1907, but increasing foreign fishing pressures on the Bank in the 1970s and 1980s forced many Saban fishermen out. Concerns were compounded by the suspicion that shipping was also damaging the benthic habitat of the bank. Fishery legislation, enacted in 1996, brought an end to unlicensed fishing and established Coast Guard enforcement on the Bank, but also led to protests from neighboring countries that previously fished on the Bank.Research was …

Morphological Differences Among Eyeless Amphipods In The Genus Stygobromus Dwelling In Different Subterranean Habitats, David C. Culver, John R. Holsinger, Mary C. Christman, Tanja Pipan

Biological Sciences Faculty Publications

The amphipod genus Stygobromus occurs in a variety of subterranean habitats in North America, including caves, phreatic (groundwater) lakes, and superficial subterranean habitats (seeps and epikarst). The habitats share the absence of light but differ in other features, such as pore size of the habitat, available food, and degree of seasonality. Measurements of body size, antennal size, and antennal segment number of type specimens were compared for 56 species occurring in the eastern United States. Except for differences in body size, differences among species in the four different habitats were not significant. Body size was related to relative pore size …

The Impact Of Conservation On The Status Of The World's Vertebrates, Michael Hoffmann, Craig Hilton-Taylor, Ariadne Angulo, Monika Böhm, Thomas M. Brooks, Stuart H. M. Butchart, Kent E. Carpenter, Janice Chanson, Beth A. Polidoro, Jonnell C. Sanciangco

Biological Sciences Faculty Publications

Using data for 25,780 species categorized on the International Union for Conservation of Nature Red List, we present an assessment of the status of the world's vertebrates. One-fifth of species are classified as Threatened, and we show that this figure is increasing: On average, 52 species of mammals, birds, and amphibians move one category closer to extinction each year. However, this overall pattern conceals the impact of conservation successes, and we show that the rate of deterioration would have been at least one-fifth again as much in the absence of these. Nonetheless, current conservation efforts remain insufficient to offset the …

Predictors Of Developmental Screenings For Young Children, Janice Chandler Ranne

Health Services Research Dissertations

This study examines the usefulness of the New Model of Children's Health and its Influences for the identification of predictors for health service effectiveness. Health service effectiveness is measured by probability estimations of whether young children receive formal or informal developmental screenings. Screenings lead to prevention of communication delays in later childhood. Formal screenings with standardized questions are preferred over informal screenings, which are knowledgeable observations. The theoretical framework is a child-centered socio-ecological theory that is untested for use in health service effectiveness studies until the present one. Four developmental concepts of the theoretical framework, social environment, physical environment, biological …

Structure Prediction For The Helical Skeletons Detected From The Low Resolution Protein Density Map, Kamal Al Nasr, Weitao Sun, Jing He

Computer Science Faculty Publications

Background: The current advances in electron cryo-microscopy technique have made it possible to obtain protein density maps at about 6-10 Å resolution. Although it is hard to derive the protein chain directly from such a low resolution map, the location of the secondary structures such as helices and strands can be computationally detected. It has been demonstrated that such low-resolution map can be used during the protein structure prediction process to enhance the structure prediction.

Results: We have developed an approach to predict the 3-dimensional structure for the helical skeletons that can be detected from the low resolution protein density …

Improving Predicted Protein Loop Structure Ranking Using A Pareto-Optimality Consensus Method, Yaohang Li, Ionel Rata, See-Wing Chiu, Erik Jakobsson

Computer Science Faculty Publications

Background

Accurate protein loop structure models are important to understand functions of many proteins. Identifying the native or near-native models by distinguishing them from the misfolded ones is a critical step in protein loop structure prediction.

Results

We have developed a Pareto Optimal Consensus (POC) method, which is a consensus model ranking approach to integrate multiple knowledge- or physics-based scoring functions. The procedure of identifying the models of best quality in a model set includes: 1) identifying the models at the Pareto optimal front with respect to a set of scoring functions, and 2) ranking them based on the fuzzy …

Prostate Cancer Region Prediction Using Maldi Mass Spectra, Ayyappa Vadlamudi, Shao-Hui Chuang, Xiaoyan Sun, Lisa Cazares, Julius Nyalwidhe, Dean Troyer, O. John Semmes, Jiang Li, Frederic D. Mckenzie

Electrical & Computer Engineering Faculty Publications

For the early detection of prostate cancer, the analysis of the Prostate-specific antigen (PSA) in serum is currently the most popular approach. However, previous studies show that 15% of men have prostate cancer even their PSA concentrations are low. MALDI Mass Spectrometry (MS) proves to be a better technology to discover molecular tools for early cancer detection. The molecular tools or peptides are termed as biomarkers. Using MALDI MS data from prostate tissue samples, prostate cancer biomarkers can be identified by searching for molecular or molecular combination that can differentiate cancer tissue regions from normal ones. Cancer tissue regions are …

Nutrient Cycles And Marine Microbes In A Co2-Enriched Ocean, David A. Hutchins, Margaret R. Mulholland, Feixue Fu

OES Faculty Publications

The ocean carbon cycle is tightly linked with the cycles of the major nutrient elements nitrogen, phosphorus, and silicon. It is therefore likely that enrichment of the ocean with anthropogenic CO2 and attendant acidification will have large consequences for marine nutrient biogeochemistry, and for the microbes that mediate many key nutrient transformations. The best available evidence suggests that the nitrogen cycle may respond strongly to higher CO2 through increases in global N2 fixation and possibly denitrification, as well as potential decreases in nitrification. These trends could cause nitrification to become a nitrogen cycle "bottleneck," by increasing the flux of N2 …

A Review Of The Lethal Spiny Lobster Virus Pav1 - Ten Years After Its Discovery, Donald C. Behringer, Mark J. Butler Iv, Jeffrey D. Shields

Biological Sciences Faculty Publications

In 1999, we discovered that juvenile Caribbean spiny lobsters (Panulirus argus) in the Florida Keys were infected with PaV1 (Panulirus argus virus 1), the first naturally occurring pathogenic virus reported from lobsters. The virus profoundly affects their biology and ecology. PaV1 is probably wide-spread in the Caribbean with confirmed infections from the United States (Florida), St Croix, Mexico, and Belize; and anecdotal reports from the Bahamas and Cuba. Mean prevalence in the Florida Keys has been stable since 1999 (5 - 8%), but has risen from 2.7% to 10.9% in Mexico (Puerto Morelos), the only other country where …

Circulation, Vol. 16, No. 1, Center For Coastal Physical Oceanography, Old Dominion University, Tom Gatski

CCPO Circulation

Fall 2009 issue of CCPO Circulation featuring article "Simulation and Modeling of Turbulence" by Dr. Tom Gatski

Solvent Dependent Morphologies In Thiol-Ene Photopolymerization: A Facile Route To Synthesis Of Resorcinarene Nanocapsules, Zaharoula Marie Kalaitzis

Chemistry & Biochemistry Theses & Dissertations

Synthesis of morphologically distinct polymeric nanostructures is vital for their wide ranging applications from nanomedicine to material science. Among various polymeric nanostructures, nanocapsules in particular have attracted a lot of attention as nanoreactors and drug delivery vehicles in nanomedicine. Often, synthesis of nanocapsules is achieved by template-based approaches. A direct, template-free method for the fabrication of nanocapsules and a variety of other morphologically distinct polymeric architectures was developed. The photopolymerization of a resorcinarene thiol-ene surfactant in various solvents lead to the formation of nanocapsules, nanoparticles, fibers, distorted honeycomb-like lattices, and sheets. The progress of the polymerization reaction and the morphology …

Investigating Delay In Health Related Decision Making Versus Non-Health Decision Making, Ann Lassiter Edwards

Psychology Theses & Dissertations

Health and non-health decision domains were examined to explore the differences in decision domain and delay preferences. Using an existing cognitive theory of delay (Bastardi & Shafir, 1998; Tykocinski & Ruffle, 2003), type of scenario (health vs. nonhealth) was manipulated within subjects with participants receiving three scenarios of each type. Certainty (certain vs. uncertain) and delay choice condition (no delay, delay, one-week delay) were manipulated between subjects. This resulted in a 2 (health) X 2 (certainty) X 3 (delay choice) split-plot factorial design. The dependent measure was the proportion of action responses (deciding to change status quo) across the three …

Focusing Electromagnetic Radiation In Dielectric Media, Mark A. Migliaccio Jr.

Electrical & Computer Engineering Theses & Dissertations

Bioelectrics and microwave imaging requires an ultra-wideband (UWB) antenna to deliver intense, short electromagnetic pulses into biological targets for the purpose of therapy and imaging. Two antennas with different focal distances, predicted by a two­ dimensional model, have been designed for focusing electromagnetic radiation in the near field.

Focusing is achieved through the use of prolate spheroidal reflector antennas with a conical wave launcher submerged in water. For an ultra-wideband feed signal, with a rise time of 200 picoseconds, the maximum electric field was found to be close to the edge of the reflector, a result that differs from the …

Bactericidal Effects Of Low Temperature Atmospheric Pressure Plasma On Porphyromonas Gingivalis, Arwa Mahasneh

Dental Hygiene Theses & Dissertations

Purpose: The biomedical application of low temperature atmospheric pressure plasma (LTAPP) is a collaborative interest for engineering, medical, dental and biological researchers. This laboratory study tested whether LTAPP can limit growth of Porphyromonas gingivalis, a periodontal pathogen strongly associated with periodontal disease, disease progression, and refractory periodontitis. Methods: After extensive pilot trials, the study consisted of 24 agar plate samples of P. gingivalis- 20 samples were exposed to LTAPP at 5, 7, 9 and 10 minutes and 4 control samples were exposed to helium gas only. Immediately after exposures, the samples were incubated anaerobically for 72 hour at …

Rapid Prototyping Augmented Skin Pathology For Medical Simulation And Training, Annette Castelino

Electrical & Computer Engineering Theses & Dissertations

The goal of this research is to study how augmented reality technology could be applied in training medical students for better clinical practice and diagnosis in the treatment of skin conditions using skin pathology prototypes. Described within this thesis is an innovative method of producing skin abscess prototypes that augment the Standardized Patient (SP) for simulation purposes.

The method adopted is a combination of the cost-effective technique of rapid prototyping (RP) — 3D inkjet printing and 3D graphics modeling. The visual and haptic realism of these developed prototypes along with the use of moulage enable the SP to exhibit realistic …

Monte Carlo Model Of Light Propagation In Tissues And The Effects Of Phase Changes On The Light Intensity, Rakesh Choula

Electrical & Computer Engineering Theses & Dissertations

Lasers, due to their unique properties, have a wide range of applications in the medical field. For accurate laser treatments that focus on bio-tissues, prior knowledge of the amount of laser power, spot size and its irradiation time are necessary. In order to predict the effects of lasers on tissues and their bio-effects, a first necessary step is the creation of a model that can predict the temperature distributions within the tissue following laser excitation. This involves modeling light propagation through the tissue with inclusion of internal scattering, and assessment of the energy deposited by the incoming photons. The next …

A Job-Shop Scheduling Model Using Genetic Algorithm And Giffler Thompson Approach, Nikhil Deepak Bumb

Mechanical & Aerospace Engineering Theses & Dissertations

The major objective of this thesis topic is to study the challenging research subject of job shop scheduling with the intent of optimizing the makespan. The job - shop scheduling problem is one of the hardest combinatorial optimization problems. The main aim of scheduling is an efficient allocation of shared resources like machines, operators or both over time for competing activities.

This research focuses on developing a model for optimizing job shop scheduling problem using genetic algorithm and the Giffler Thompson (priority dispatching rule) technique. Considering different parameters, the model comes up with an appropriate way to schedule the tasks …

Frances Burke Leftwich

Virginia Journal of Science

Obituary for Dr. Francis Burke Leftwich, 1933-2010.

Winners Of Undergraduate Research Funds 2009-2010

Virginia Journal of Science

Listing of undergraduate award winners for poster presentations held on October 24, 2009.

First Records Of Hypleurochilus Geminatus And Centropristis Philadelphica From Chesapeake Bay, Aimee D. Halvorson

Virginia Journal of Science

During the fall of 2007, Centropris philadelphica (rock seabass) and Hypleurochilus geminatus (Crested blenny) were collected from Chesapeake Bay. These captures are significant as they represent the first substantiated record of C. philadelphica from Chesapeake Bay and only the second and third validated records of H. geminatus. Additionally, the first record of H. geminatus from Chesapeake Bay was only recently recognized since the specimen had been previously misidentified as Parablennius marmoreus (seaweed blenny). The collection of seven individuals of H. geminatus in 2007, from two locations, indicates that the species may be resident within the Chesapeake Bay estuary.

Phytoplankton Blooms: Their Occurrence And Composition Within Virginia's Tidal Tributaries, Harold G. Marshall, Todd A. Egerton

Virginia Journal of Science

Sporadic algal bloom development within a 10 year monitoring program in Virginia tidal tributaries of Chesapeake Bay is reviewed. These blooms were common events, characteristically producing a color signature to the surface water, typically short lived, occurring mainly from spring into autumn throughout different salinity regions of these rivers, and were produced primarily by dinoflagellates. The abundance threshold levels that would identify bloom status from a non-bloom presence were species specific, varied with the taxon's cell size, and ranged from ca. 10 to 10⁴ cells mL^-1. Among the most consistent sporadic bloom producers were the dinoflagellates Akashiwo …

The Role Of Human Endogenous Retroviruses In Renal Cell Carcinoma, Michele D. Tisdale

Biological Sciences Theses & Dissertations

Human endogenous retroviruses make up approximately 8-9% of the human genome. A number of expressed HERVs, those that are actively transcribing, have been associated with various cancers. Suppression mechanisms that control HERV expression often fail or become more permissive in tissues where expression should be restricted. Previous studies have identified HERV expression in breast cancer tissues, whereas normal tissue HERV expression remained suppressed. In addition, studies of DNA hypermethylation have correlated with the ability to contribute to cancer development. Hypermethylation of several tumor suppressor genes occurs frequently in cancers and alterations in promoter regions could contribute to the development of …

Theoretical Studies Of 2,3 -Sigmatropic Rearrangements Of Allylic Selenoxides And Selenimides, Craig A. Bayse, Sonia Antony

Chemistry & Biochemistry Faculty Publications

Density-functional theory is used to model the endo and exo transition states for [2,3]-sigmatropic rearrangement of allylic aryl-selenoxides and -selenimides. The endo transition state is generally preferred for selenoxides if there is no substitution at the 2 position of the allyl group. Based upon the relative energies of the endo and exo transition states, enantioselectivity of rearrangements is expected to be greatest for molecules with substitutions at the 1- or (E)-3- position of the allyl group. Ortho substitution of a nitro group on the ancillary selenoxide phenyl ring reduces the activation barriers, increases the difference between the endo and exo …

Behavioral Enhancement Of Onshore Transport By Postlarval Caribbean Spiny Lobster (Panulirus Argus), Jason S. Goldstein, Mark J. Butler Iv

Biological Sciences Faculty Publications

We conducted a series of laboratory experiments to examine the orientation, settlement, and metamorphosis of Caribbean spiny lobster (Panulirus argus) pueruli (postlarvae) in response to cues characteristic of their nursery in back-reef tropical lagoons. Our results suggest that pueruli were attracted to coastal water sources and the metabolites of red macroalgae (Laurencia spp.) when compared with oceanic water and artificial seawater treatments. Pueruli were not attracted to waterborne cues from sea grass, were repelled by hypersaline or hyposaline water, and discerned coastal cues from water collected as far as 30 km offshore from the reef. We also conducted experiments to …

Effects Of Non-Equilibrium Plasma On Eukaryotic Cells (Final Report: Grant Fa9550-06-1-0004), Mounir Laroussi, Fred C. Dobbs, Old Dominion University

Electrical & Computer Engineering Faculty Publications

This document is our final report describing the research activities carried out under AFOSR Grant FA9550-06-1-0004. First, descriptions of our cold plasma generation systems are presented. Two systems, developed with past and present AFOSR support, are available in our laboratory. The first is a pulsed device capable of emitting a cold plasma plume in room air. The second is an air plasma generator the core of which is a dielectric barrier discharge excited by a high AC voltage. Following these brief descriptions we first present the effects of an atmospheric pressure air plasma on four different types of eukaryotic microalgae. …

Habitat-Based Intraguild Predation By Caribbean Reef Octopus Octopus Briareus On Juvenile Caribbean Spiny Lobster Panulirus Argus, Mark J. Butler Iv, Jennifer A. Lear

Biological Sciences Faculty Publications

Intraguild predation occurs when species simultaneously compete for resources and interact as predator and prey, which describes the interaction between juvenile Caribbean spiny lobster Panulirus argus and Caribbean reef octopus Octopus briareus in the Florida Keys, USA. Octopuses are notorious predators of decapod crustaceans, and their use of crevice shelters suggests that they may also compete for shelter with their lobster prey. Lobsters use mainly chemical cues to detect and avoid octopus, so we hypothesized that the negative association between these species may be as much the consequence of avoidance of a superior competitor as it is of direct predation. …

Time Valuation Of Risk: A Delayed-Bang Approach, Abhishek Pathak

Engineering Management & Systems Engineering Theses & Dissertations

The subject of this thesis is the combined use of engineering economics and survival analysis in estimating time-value of risk-related resources. The discussion includes (1) the need for sustainable risk management, (2) the importance of time-valuation of risk related resources in the allocation or selection among competing risk mitigation alternatives, (3) the convergence of deterministic engineering economics, survivability analysis, and probabilistic analysis, and (4) results and examples of application in the context of prevention of risk event or mitigation of its consequences.

The significance of this thesis is in how three topics: engineering economics, survivability analysis, and probability theory can …

The Cognitive And Behavioral Effects Of Acute Ethanol Exposure And Acute Ethanol Withdrawal, Natasha Laverne Golden

Psychology Theses & Dissertations

Although ethanol, in the form of alcoholic beverages, is one of the most widely used and abused drugs, little research has focused on cognitive and behavioral impairments relating to acute ethanol withdrawal. The primary purpose of the current study was to determine the effects of acute ethanol withdrawal on cognition and behavior using the radial arm maze (RAM) and the elevated plus maze (EPM). The secondary purpose of the study was to explore the immediate effects of acute ethanol exposure using a repeated acquisition version of the RAM. Sixteen male, Long-Evans rats were used for the study. For acute ethanol …