Digital Commons Network^™

Ultrasensitive Analysis Of Binding Affinity Of Hiv Receptor And Neutralizing Antibodies Using Solution-Phase Electrochemiluminescence Assay, Xiao-Hong Nancy Xu, Zhaoyang Wen, William J. Brownlow

Chemistry & Biochemistry Faculty Publications

Binding of a few ligand molecules with its receptors on cell surface can initiate cellular signaling transduction pathways, and trigger viral infection of host cells. HIV-1 infects host T-cells by binding its viral envelope protein (gp120) with its receptor (a glycoprotein, CD4) on T cells. Primary strategies to prevent and treat HIV infection is to develop therapies (e.g., neutralizing antibodies) that can block specific binding of CD4 with gp120. The infection often leads to the lower counts of CD4 cells, which makes it an effective biomarker to monitor the AIDS progression and treatment. Despite research over decades, quantitative assays for …

Improved Method For Quantifying The Air-Sea Flux Of Volatile And Semi-Volatile Organic Carbon, Emily Hauser, Rebecca M. Dickhut, Renee Falconer, Andrew S. Wozniak

Chemistry & Biochemistry Faculty Publications

A method for quantifying the diffusive air-sea exchange of gaseous organic carbon (OC) was developed. OC compounds were separated into two operational pools-those that were kinetically air limited in diffusion across the air-sea interface and those that were water limited-during simultaneous air/water sampling. The method separates OC compounds into low Henry's law constant (low-H) semivolatile OC (SOC) and high Henry's law constant (high-H) volatile OC (VOC) pools that can be categorized by relating diffusion kinetic parameters to Henry's Law constant. Air limited (low-H; H << similar to 0.1 L atm mol(^-1)) compounds were collected in pure water traps and were quantified as dissolved OC, whereas …

Silver Nanoparticles Induce Developmental Stage-Specific Embryonic Phenotypes In Zebrafish, Kerry J. Lee, Lauren M. Browning, Prakash D. Nallathamby, Christopher J. Osgood, Xiao-Hong Nancy Xu

Chemistry & Biochemistry Faculty Publications

Much is anticipated from the development and deployment of nanomaterials in biological organisms, but concerns remain regarding their biocompatibility and target specificity. Here we report our study of the transport, biocompatibility and toxicity of purified and stable silver nanoparticles (Ag NPs, 13.1 ± 2.5 nm in diameter) upon the specific developmental stages of zebrafish embryos using single NP plasmonic spectroscopy. We find that single Ag NPs passively diffuse into five different developmental stages of embryos (cleavage, early-gastrula, early-segmentation, late-segmentation, and hatching stages), showing stage-independent diffusion modes and diffusion coefficients. Notably, the Ag NPs induce distinctive stage and dose-dependent phenotypes and …

The Use Of Metagenomic Approaches To Analyze Changes In Microbial Communities, Girish Neelakanta, Hameeda Sultana

Biological Sciences Faculty Publications

Microbes are the most abundant biological entities found in the biosphere. Identification and measurement of microorganisms (including viruses, bacteria, archaea, fungi, and protists) in the biosphere cannot be readily achieved due to limitations in culturing methods. A non-culture based approach, called “metagenomics”, was developed that enabled researchers to comprehensively analyse microbial communities in different ecosystems. In this study, we highlight recent advances in the field of metagenomics for analyzing microbial communities in different ecosystems ranging from oceans to the human microbiome. Developments in several bioinformatics approaches are also discussed in context of microbial metagenomics that include taxonomic systems, sequence databases, …

Seasonal Dynamics Of Mesodinium Rubrum In Chesapeake Bay, Matthew D. Johnson, Doane K. Stoecker, Harold G. Marshall

Biological Sciences Faculty Publications

The photosynthetic ciliate Mesodinium rubrum is a common member of coastal phytoplankton communities that is well adapted to low-light, turbid ecosystems. It supports the growth of, or competes with, harmful dinoflagellate species for cryptophyte prey, as well as being a trophic link to copepods and larval fish. We have compiled data from various sources (n = 1063), on the abundance and distribution of M. rubrum in Chesapeake Bay and its tributaries. Because M. rubrum relies on obtaining organelles from cryptophyte algae to maintain rapid growth, we also enumerated cryptophyte algae in the portion of these samples that we collected …

Identifying Requirements For The Invasion Of A Tick Species And Tick-Borne Pathogen Through Ticksim, Holly Gaff, Robyn Nadolny

Biological Sciences Faculty Publications

Ticks and tick-borne diseases have been on the move throughout the United State over the past twenty years. We use an agent-based model, TICKSIM, to identify the key parameters that determine the success of invasion of the tick and if that is successful, the success of the tick-borne pathogen. We find that if an area has competent hosts, an initial population of ten ticks is predicted to always establish a new population. The establishment of the tick-borne pathogen depends on three parameters: the initial prevalence in the ten founding ticks, the probability that a tick infects the longer-lived hosts and …

Larval Connectivity And The International Management Of Fisheries, Andrew S. Kough, Claire B. Paris, Mark J. Butler Iv

Biological Sciences Faculty Publications

Predicting the oceanic dispersal of planktonic larvae that connect scattered marine animal populations is difficult, yet crucial for management of species whose movements transcend international boundaries. Using multi-scale biophysical modeling techniques coupled with empirical estimates of larval behavior and gamete production, we predict and empirically verify spatio-temporal patterns of larval supply and describe the Caribbean-wide pattern of larval connectivity for the Caribbean spiny lobster (Panulirus argus), an iconic coral reef species whose commercial value approaches $1 billion USD annually. Our results provide long sought information needed for international cooperation in the management of marine resources by identifying lobster larval connectivity …

Conus: First Comprehensive Conservation Red List Assessment Of A Marine Gastropod Mollusc Genus, Howard Peters, Bethan C. O'Leary, Julie P. Hawkins, Kent E. Carpenter, Callum M. Roberts

Biological Sciences Faculty Publications

Marine molluscs represent an estimated 23% of all extant marine taxa, but research into their conservation status has so far failed to reflect this importance, with minimal inclusion on the authoritative Red List of the International Union for the Conservation of Nature (IUCN). We assessed the status of all 632 valid species of the tropical marine gastropod mollusc, Conus (cone snails), using Red List standards and procedures to lay the groundwork for future decadal monitoring, one of the first fully comprehensive global assessments of a marine taxon. Three-quarters (75.6%) of species were not currently considered at risk of extinction owing …

Thalassiosira Spp. Community Composition Shifts In Response To Chemical And Physical Forcing In The Northeast Pacific Ocean, P. Dreux Chappell, Leann P. Whitney, Traci L. Haddock, Susanne Menden-Deuer, Eric G. Roy, Mark L. Wells, Bethany D. Jenkins

Biological Sciences Faculty Publications

Diatoms are genetically diverse unicellular photosynthetic eukaryotes that are key primary producers in the ocean. Many of the over 100 extant diatom species in the cosmopolitan genus Thalassiosira are difficult to distinguish in mixed populations using light microscopy. Here, we examine shifts in Thalassiosira spp. composition along a coastal to open ocean transect that encountered a 3-month-old Haida eddy in the northeast Pacific Ocean. To quantify shifts in Thalassiosira species composition, we developed a targeted automated ribosomal intergenic spacer analysis (ARISA) method to identify Thalassiosira spp. in environmental samples. As many specific fragment lengths are indicative of individual Thalassiosira spp., …

Phytoplankton In Virginia Lakes And Reservoirs, Harold G. Marshall

Biological Sciences Faculty Publications

This study involves a phytoplankton summer/autumn survey in 46 Virginia lakes and reservoirs during 2010-2012. A total of 307 taxa were identified which included several filamentous and colonial cyanabacteria in bloom concentrations. With the exception of one natural lake, the other sites sampled represent impoundments created decades ago, with the majority presently classified as meso- or eutrophic. Among the cyanobacteria were 6 known toxin producers (Anabaena circinalis, Anabaena spiroides, Aphanizomenon flos-aquae, Cylindrospermopsis raciborskii, Limnothrix redekei, and Microcystis aeruginosa). The study characterizes phytoplankton populations in these aging freshwater habitats taken from a large number …

The Small Mammals Of Two Dune Communities In Southeastern Virginia, Robert K. Rose, Justin L. Sweitzer

Virginia Journal of Science

Small mammals were surveyed using live and pitfall traps between the primary and secondary dunes at two locations on the shores of the Chesapeake Bay near the Atlantic Ocean: Little Creek Amphibious Base in Norfolk and Joint Expeditionary Base Fort Story in Virginia Beach, Virginia. Captures were dominated by house mice (Mus musculus) in interdunal habitats with sparse grass, whereas white-footed mice (Peromyscus leucopus) were found primarily in shrubby live-oak thickets on the tops of dunes. Hispid cotton rats (Sigmodon hispidus) were present only at Fort Story, and then only in patches of dense …

Ontogenetic Shifts In Resource Allocation: Colour Change And Allometric Growth Of Defensive And Reproductive Structures In The Caribbean Spiny Lobster Panulirus Argus, Joshua R. Anderson, Angelo J. Spadaro, J. Antonio Baeza, Donald C. Behringer

Biological Sciences Faculty Publications

Resource allocation theory predicts a disproportionately large allocation of resources to defensive structures during early ontogeny in organisms that are subject to more intense predation at smaller than at larger body sizes. We tested this prediction on the Caribbean spiny lobster Panulirus argus, which exhibits a negative relationship between predation risk and body size with a high natural mortality of smaller individuals. Independent allometric growth analyses demonstrated that numerous defensive structures (e.g. orbital horns, segments supporting the antenna, the tail fan) display negative allometric growth throughout ontogeny. We interpret these findings as lobsters investing disproportionately more resources to defensive …

The Effects Of 11 Yr Of Co2 Enrichment On Roots In A Florida Scrub-Oak Ecosystem, Frank Day, Rachel E. Schroeder, Daniel B. Stover, Alisha L. P. Brown, John R. Butnor, John Dilustro, Bruce A. Hungate, Paul Dijkstra, Benjamn D. Duval, Troy J. Seiler

Biological Sciences Faculty Publications

• Uncertainty surrounds belowground plant responses to rising atmospheric CO₂ because roots are difficult to measure, requiring frequent monitoring as a result of fine root dynamics and long-term monitoring as a result of sensitivity to resource availability.
• We report belowground plant responses of a scrub-oak ecosystem in Florida exposed to 11yr of elevated atmospheric CO₂ using open-top chambers. We measured fine root production, turnover and biomass using minirhizotrons, coarse root biomass using ground-penetrating radar and total root biomass using soil cores.
• Total root biomass was greater in elevated than in ambient plots, and the absolute difference was larger than …

Contemporary English In The Usa, Melissa Axelrod, Joanne Scheibman

English Faculty Publications

Indigenous and immigrant speakers from a variety of linguistic and sociocultural backgrounds have in different ways contributed to the development of present day American English, as have the geographical and social dimensions of the country. This paper provides a survey of contemporary usage of American English by describing and illustrating linguistic features documented for social and regional groups in the United States. The focus on variation in pronunciation, grammar, and meaning in American English highlights the diversity of dialects and styles in the U.S. as well as the centrality of sociocultural identities to language use. We group examples of variation …

Heritable Melanism And Parasitic Infection Both Result In Black-Spotted Mosquitofish, Lisa Horth, David Gauthier, Wolfgang Vogelbein

Biological Sciences Faculty Publications

Male Gamhusia holhrooki (Eastern Mosquitofish) express a heritable pigmentation polymorphism approximate to 99% of males are silver, and only approximate to 1% have a melanic, black-spotted pattern. Sex-linkage, an autosomal modifier, and temperature control the expression of this heritable melanism. In many teleosts, melanin also accumulates around the site of parasitic invasion. We have identified black-spot disease in wild mosquitofish from their native habitat. Here, we demonstrate convergence upon the black-pigmented phenotype through two means: 1) heritable melanism, and 2) melanic spotting on the silver genotype that results from infection with immature encysted trematodes. Females are silver and express greater …

Pronounced Genetic Structure In A Highly Mobile Coral Reef Fish, Caesio Cuning, In The Coral Triangle, Amanda S. Ackiss, Shinta Pardede, Eric D. Crandall, Ma Carmen A. Ablan-Lagman, Ambariyanto, November Romena, Paul H. Barber, Kent E. Carpenter

Biological Sciences Faculty Publications

The redbelly yellowtail fusilier Caesio cuning has a tropical Indo-West Pacific range that straddles the Coral Triangle, a region of dynamic geological history and the highest marine biodiversity on the planet. Previous genetic studies in the Coral Triangle indicate the presence of multiple limits to connectivity. However, these studies have focused almost exclusively on benthic, reef-dwelling species. Schooling, reef-associated fusiliers (Perciformes: Caesionidae) account for a sizable portion of the annual reef catch in the Coral Triangle, yet to date, there have been no indepth studies on the population structure of fusiliers or other mid-water, reef-associated planktivores across this region. We …

The Role Of P38 Mapk In The Aetiopathogenesis Of Psoriasis And Psoriatic Arthritis, Athanasios Mavropoulos, Eirini I. Rigopoulou, Christos Liaskos, Dimitrios P. Bogdanos, Lazaros I. Sakkas

Biological Sciences Faculty Publications

The pathogenetic mechanisms responsible for the induction of immune-mediated disorders, such as psoriasis, remain not well characterized. Molecular signaling pathways are not well described in psoriasis, as well as psoriatic arthritis, which is seen in up to 40% of patients with psoriasis. Signaling pathway defects have long been hypothesized to participate in the pathology of psoriasis, yet their implication in the altered psoriatic gene expression still remains unclear. Emerging data suggest a potential pathogenic role for mitogen activated protein kinases p38 (p38 MAPK) extracellular signal-regulated kinase 1/2 (ERK1/2), and c-Jun N-terminal kinase (JNK) in the development of psoriasis. The data …

A Preliminary Examination Of An In Situ Dual Dye Approach To Measuring Light Fluxes In Lotic Systems, Elizabeth C. Minor, Elizabeth James, Jay A. Austin, Veronica Nelson, Ryan Lusk, Kenneth Mopper

Chemistry & Biochemistry Faculty Publications

Light is a critical parameter in aquatic ecosystems, affecting primary production and in situ photochemistry. However, measuring light exposure for suspended particles or dissolved components in a dynamic water column can be challenging with existing Eulerian approaches. Here, we assess the simultaneous deployment of two dyes differing in photolability (rhodamine WT and fluorescein) as a Lagrangian measure of sunlight exposure in a lotic system. Fluorescein is sensitive to light exposure; rhodamine WT is relatively photostable. We examined dye fluorescence at various pH, salinity, and temperature conditions. We also tested dye photolability as a function of pH and wavelength range. In …

Feeling My Way Through: Writing About A Childhood In Foster Care, David Bahr

Reconstruction: Studies in Contemporary Culture

[First paragraph]

I don’t remember when I first began to write about my experience as a foster child; I do know that I had been “writing” it in my head for years. Waiting for a train, walking down the street, standing in an elevator, I would replay scenes, test phrases, and try to imagine the form and structure that my fragmented childhood might take.

How Do Shellfisheries Influence Genetic Connectivity In Metapopulations? A Modeling Study Examining The Role Of Lower Size Limits In Oyster Fisheries, Daphne M. Munroe, Eileen E. Hofmann, Eric N. Powell, John M. Klinck

CCPO Publications

Fisheries can potentially alter evolutionary processes such as genetic connectivity and lead to genotypic changes in stocks. Using an individual-based metapopulation genetics model, we examined the possible influence of oyster (Crassostrea virginica) fisheries on genetic connectivity. We simulated a range of realistic fishing pressures, with and without a minimum size limit (limit = 63.5 mm), over a range of fishing scenarios including single-area and stock-wide fisheries. Movement of a neutral marker gene provided an indicator of gene transfer between populations. Simulations showed that fishing may alter genetic connectivity. Increasing fishing pressure tended to decrease potential for fished populations …

Us Globec: Program Goals, Approaches, And Advances, Elizabeth Turner, Eileen E. Hofmann, Dale B. Haidvogel, Harold P. Batchelder, Michael J. Fogarty, Thomas Powell

CCPO Publications

No abstract provided.

On The Role Of Coastal Troughs In The Circulation Of Warm Circumpolar Deep Water On Antarctic Shelves, Pierre St-Laurent, John M. Klinck, Michael S. Dinniman

CCPO Publications

Oceanic exchanges across the continental shelves of Antarctica play an important role in biological systems and the mass balance of ice sheets. The focus of this study is on the mechanisms responsible for the circulation of warm Circumpolar Deep Water (CDW) within troughs running perpendicular to the continental shelf. This is examined using process-oriented numerical experiments with an eddy-resolving (1 km) 3D ocean model that includes a static and thermodynamically active ice shelf. Three mechanisms that create a significant onshore flow within the trough are identified: 1) a deep onshore flow driven by the melt of the ice shelf, 2) …

Advances In Marine Ecosystem Dynamics From Us Globec: The Horizontal-Advection Bottom-Up Forcing Paradigm, Emanuele Di Lorenzo, David Mountain, Harold Batchelder, Nicholas Bond, Eileen E. Hofmann

CCPO Publications

A primary focus of the US Global Ocean Ecosystem Dynamics (GLOBEC) program was to identify the mechanisms of ecosystem response to large- scale climate forcing under the assumption that bottom-up forcing controls a large fraction of marine ecosystem variability. At the beginning of GLOBEC, the prevailing bottom-up forcing hypothesis was that climate-induced changes in vertical transport modulated nutrient supply and surface primary productivity, which in turn affected the lower trophic levels (e.g., zooplankton) and higher trophic levels (e.g., fish) through the trophic cascade. Although upwelling dynamics were confirmed to be an important driver of ecosystem variability in GLOBEC studies, the …

Antifragility Analysis And Measurement Framework For Systems Of Systems, John Johnson, Adrian V. Gheorghe

Engineering Management & Systems Engineering Faculty Publications

The twenty-first century is defined by the social and technical hazards we face. A hazardous situation is a condition, or event, that threatens the well-being of people, organizations, societies, environments, and property. The most extreme of the hazards are considered X-Events and are an exogenous source of extreme stress to a system. X-Events can also be the unintended outputs of a system with both positive (serendipitous) and negative (catastrophic) consequences. Systems can vary in their ability to withstand these stress events. This ability exists on a continuum of fragility that ranges from fragile (degrading with stress), to robust (unchanged by …

Melatonin Supplementation Improves Glycemic Control While Lowering Oxidative Stress In Type 2 Diabetes, Carmine R. Grieco, Sheri R. Colberg, C. Thomas Somma, Andrew G. Thompson, Aaron I. Vinik

Human Movement Studies & Special Education Faculty Publications

The purpose of this investigation was to evaluate the effect of melatonin on glycemic control and oxidative stress (OS) in adults with type 2 diabetes (T2D). Fourteen subjects with T2D (10 female, 4 male; 52.5 ± 5.0 years) were randomly assigned to melatonin (MEL) or placebo groups (PLA) for 42 days, in a crossover design. Subjects ingested 10 mg of MEL or an identical placebo (PLA) 30 minutes prior to sleep. Fasting blood draws occurred at baseline, 42 days, and 84 days. Plasma malondialdehyde, a marker of OS, significantly decreased on MEL (-6.25±2.10 nmol/ml) compared to PLA (0.72±3.30, p=0.028). The …

Fire, Hurricane And Carbon Dioxide: Effects On Net Primary Production Of A Subtropical Woodland, Bruce A. Hungate, Frank P. Day, Paul Dijkstra, Benjamin D. Duval, C. Ross Hinkle, J. Adam Langley

Biological Sciences Faculty Publications

Disturbance affects most terrestrial ecosystems and has the potential to shape their responses to chronic environmental change. Scrub-oak vegetation regenerating from fire disturbance in subtropical Florida was exposed to experimentally elevated carbon dioxide (CO₂) concentration (+350ll^-1) using open-top chambers for 11yr, punctuated by hurricane disturbance in year 8. Here, we report the effects of elevated CO₂ on aboveground and belowground net primary productivity (NPP) and nitrogen (N) cycling during this experiment. The stimulation of NPP and N uptake by elevated CO₂ peaked within 2yr after disturbance by fire and hurricane, when soil nutrient availability was …

Direct And Legacy Effects Of Long-Term Elevated Co2 On Fine Root Growth And Plant-Insect Interactions, Peter Stiling, Daniel Moon, Anthony Rossi, Rebecca Forkner, Bruce A. Hungate, Frank P. Day, Rachel E. Schroeder, Bert Drake

Biological Sciences Faculty Publications

Increasing atmospheric CO₂ concentrations alter leaf physiology, with effects that cascade to communities and ecosystems. Yet, responses over cycles of disturbance and recovery are not well known, because most experiments span limited ecological time. We examined the effects of CO₂ on root growth, herbivory and arthropod biodiversity in a woodland from 1996 to 2006, and the legacy of CO₂ enrichment on these processes during the year after the CO₂ treatment ceased. We used minirhizotrons to study root growth, leaf censuses to study herbivory and pitfall traps to determine the effects of elevated CO₂ on arthropod …

Responses Of Amblyomma Americanum And Dermacentor Variabilis To Odorants That Attract Haematophagous Insects, A. L. Carr, R. M. Roe, C. Arellano, D. E. Sonenshine, C. Schal, C. S. Apperson

Biological Sciences Faculty Publications

Carbon dioxide (CO₂), 1-octen-3-ol, acetone, ammonium hydroxide, L-lactic-acid, dimethyl trisulphide and isobutyric acid were tested as attractants for two tick species, Amblyomma americanum and Dermacentor variabilis (Acari: Ixodidae), in doseresponse bioassays using Y-tube olfactometers. Only CO₂, acetone, 1-octen-3-ol and ammonium hydroxide elicited significant preferences from adult A. americanum, and only CO₂ was attractive to adult D. variabilis. Acetone, 1-octen-3-ol and ammonium hydroxide were separately evaluated at three doses against CO₂ (from dry ice) at a field site supporting a natural population of A. americanum nymphs and adults. Carbon dioxide consistently attracted the …

Corrected Numbers For Fish On Red List, Bruce B. Collette, Beth Polidoro, Kent Carpenter

Biological Sciences Faculty Publications

(First paragraph) Kelly Swing gives inaccurate numbers for marine fish species on the International Union for Conservation of Nature (IUCN) Red List of Threatened Species. He also mistakenly conflates the scientific process of species assessment for the Red List with the separate political process of IUCN member voting (Nature 494, 314; 2013).

Editorial-The 4th International Workshop On Modeling The Ocean (Iwmo 2012), Lie-Yauw Oey, Yasumasa Miyazawa, Hidenori Aiki, Yukio Masumoto, Tal Ezer, Takuji Waseda

CCPO Publications

The 4th International Workshop on Modeling the Ocean (IWMO; http://www.jamstec.go.jp/frcgc/jcope/htdocs/e/ iwmo2012.html) was held on May 21–24, 2012 in the vibrant city of Yokohama on the Tokyo Bay, Japan. The Workshop was hosted by Japan Agency for Marine-Earth Science and Technology (JAMSTEC)—the home of the famous “Earth Simulator”—one of the world's most powerful supercomputers dedicated for simulating the complex interactive processes of the earth and its environment.