Digital Commons Network^™

Analysis Of Reading Patterns Of Scientific Literature Using Eye-Tracking Measures, Gavindya Jayawardena, Sampath Jayarathna, Jian Wu

College of Sciences Posters

Scientific literature is crucial for researchers to inspire novel research ideas and find solutions to various problems. This study presents a reading task for novice researchers using eye-tracking measures. The study focused on the scan paths, fixation, and pupil dilation frequency of the participants. In this study, 3 participants were asked to read a pre-selected research paper while wearing an eye-tracking device (PupilLabs Core 200Hz). We specified sections of the research paper as areas of interest (title, abstract, motivation, methodology, conclusion)to analyze the eye-movements. Then we extracted eye-movements data from the recordings and processed them using an eye-movement processing pipeline. …

Nanopore Guided Regional Assembly, Eleni Adam, Desh Ranjan, Harold Riethman

College of Sciences Posters

The telomeres are the “caps” of the chromosomes and their vital role is to protect them. Possible telomere dysfunction caused by telomere rearrangements can be fatal for the cell and result in age-related diseases, including cancer. The telomeres and subtelomeres are regions that are hard to investigate. The current technology cannot provide their complete sequence, instead the DNA is given in multiple pieces. Current methods of assembling the pieces of these regions are not accurate enough due to the region’s high variability and complex repeated patterns. We propose a hybrid assembly method, the NPGREAT, which utilizes two of the latest …

Design, Commissioning And Preliminary Results Of A Magnetic Field Scanning System For Superconducting Radiofrequency Cavities, Ishwari Parajuli, Jeffrey Nice, Gianluigi Ciovati, William Clemens, Jean Delayen, Alex Gurevich

College of Sciences Posters

Superconducting radiofrequency (SRF) cavities are one of the building blocks of modern particle accelerators. Such cavities are typically made of bulk niobium, operate at liquid helium temperature (2 - 4 K) and have some of the highest quality factors found in Nature. One of the leading source of residual losses, which limits the quality factor in SRF cavities, is trapped magnetic flux from either residual ambient magnetic field or thermoelectric currents. The flux trapping mechanism depends on different niobium surface preparations and cool-down conditions. Suitable diagnostic tools are not yet available to study the effects of such conditions on magnetic …

Combine Cryo-Em Density Map And Residue Contact For Protein Structure Prediction: A Case Study, Maytha Alshammari, Jing He

College of Sciences Posters

Although atomic structures have been determined directly from cryo-EM density maps with high resolutions, current structure determination methods for medium resolution (5 to 10 Å) cryo-EM maps are limited by the availability of structure templates. Secondary structure traces are lines detected from a cryo-EM density map for α-helices and β-strands of a protein. A topology of secondary structures defines the mapping between a set of sequence segments in 1D and a set of traces of secondary structures in 3D. In order to enhance the accuracy in ranking secondary structure topologies, we propose a method that combines three sources of information …

Seasonal Variability In Diazotroph Abundance And Gene Expression At A Coastal N2 Fixation Hotspot (Outer Banks, Nc), Katherine Crider, Corday Selden, Kimberly Powell, P. Dreux Chappell

College of Sciences Posters

Marine microbial dinitrogen (N₂) fixation, the conversion of gaseous N₂ to bioavailable species, is the primary source of new oceanic nitrogen (N). N is present in nucleic acids, amino acids, and proteins, and is essential to all life. Long considered to be a primarily oligotrophic ocean process, significant N₂ fixation rates have recently been observed in coastal environments, including along the Cape Hatteras front. To see if elevated N₂ fixation was a persistent feature in this region, N₂ fixation rates and N₂ fixer (diazotroph) abundance and gene expression were investigated through roughly monthly …

Vaim For Solving Inverse Problems, Manal Almaeen, Yasir Alanazi, Michelle Kuchera, Nobuo Sato, Wally Melnitchouk, Yaohang Li

College of Sciences Posters

In this work, we propose the Variational Autoencoder Inverse Mapper (VAIM) to solve inverse problems, where there is a demand to accurately restore hidden parameters from indirect observations. VAIM is an autoencoder-based neural network architecture. The encoder and decoder networks approximate the forward and backward mapping, respectively, and a variational latent layer is incorporated into VAIM to learn the posterior parameter distributions with respect to the given observables. VAIM shows promising results on several artificial inverse problems. VAIM further demonstrates preliminary effectiveness in constructing the inverse function mapping quantum correlation functions to observables in a quantum chromodynamics analysis of nucleon …

Defining The Environmental Niche Of The Two Main Clades Of Trichodesmium: A Study On The West Florida Shelf, Kristina Confesor, Corday Selden, Kimberly Powell, Angela Knapp, Kristen Buck, Laura Donahue, Dreux Chappell

College of Sciences Posters

Dinitrogen (N₂) fixation is the process of taking widely abundant but mostly biologically inaccessible N₂ gas and converting it into more biologically accessible forms of the essential macronutrient nitrogen. Only a small fraction of organisms known as diazotrophs can perform biological N₂ fixation. Trichodesmium is one such genus of N₂-fixing marine cyanobacteria that is commonly observed in waters along the West Florida Shelf (WFS). We hypothesize that the two main Trichodesmium clades (T. erythraeum and T. thiebautii) occupy distinct environmental niches, one being more coastal and one being more oceanic. To test …

Nb3Sn Coating Of Complex Srf Cavity Structures, Jayendrika Tiskumara, Uttar Pudasaini, Grigory Eremeev, Charlie Reece, Jean Delayen

College of Sciences Posters

In the modern SRF research, Thin films coated niobium cavities are used for the low cost and increased quality factor. Among the potential thin film materials applied on the niobium, performances demonstrated by the Nb3Sn cavities makes this material attractive for SRF accelerator applications giving higher critical temperature and higher accelerating gradients. While the majority of research efforts are currently focused on the development of elliptical single-cell and multi-cell cavities, the potential of this material is evident to other cavity types, which may have complex geometries. We are working towards the development of Nb₃Sn-coated Half-wave resonator and twin …

Monarch Science Observer, Volume 9, College Of Sciences, Old Dominion University

College of Sciences Newsletter

Spring 2021 issue of Monarch Science Observer, ODU College of Sciences Newsletter.

Institutional Context Drives Mobility: A Comprehensive Analysis Of Academic And Economic Factors That Influence International Student Enrollment At United States Higher Education Institutions, Natalie Cruz

College of Education & Professional Studies (Darden) Posters

International student enrollment (ISE) has become a hallmark of world-class higher education institutions (HEIs). Although the U.S. has welcomed the largest numbers of international students since the 1950s, ISE shrunk by 10% in the previous three years from an all-time high of 903,127 students in 2016/2017 (IIE, 2019). Research studies about international student mobility and enrollment highlights the significant role that academic and economic rationales play for international students. This quantitative, ex post facto study focused on the influence of ranking, tuition, Optional Practical Training, Gross Domestic Product, and the unemployment rate on ISE at 2,884 U.S. HEIs from 2008 …

Unsupervised Multivariate Time Series Clustering, Md Monibor Rahman, Lasitha Vidyaratne, Alex Glandon, Khan Iftekharuddin

College of Engineering & Technology (Batten) Posters

Clustering is widely used in unsupervised machine learning to partition a given set of data into non-overlapping groups. Many real-world applications require processing more complex multivariate time series data characterized by more than one dependent variables. A few works in literature reported multivariate classification using Shapelet learning. However, the clustering of multivariate time series signals using Shapelet learning has not explored yet. Shapelet learning is a process of discovering those Shapelets which contain the most informative features of the time series signal. Discovering suitable Shapelets from many candidates Shapelet has been broadly studied for classification and clustering of univariate time …

Influence Of Monovalent And Divalent Ions In The Conformational Change Of Caspase-Cleaved Par-4 (Cl-Par-4) Tumor Suppressor Protein, Krishna K. Raut, Komala Ponniah, Steven M. Pascal

College of Sciences Posters

Prostate apoptosis response-4 (Par-4) is a pro-apoptotic tumor suppressor protein. We have shown that this 38 kDa full-length Par-4 (Fl-Par-4) protein is predominantly intrinsically disordered in vitro. In vivo, Par-4 is cleaved by caspase-3 at Asp-131 to generate a 24 kDa functionally active cleaved Par-4 (cl-Par-4) fragment. The cl-Par-4 protein inhibits the NF-κB-mediated cell survival pathway and causes selective apoptosis in various tumor cells. Our laboratory is interested in how the disorder-order balance within Fl-Par-4 and cl-Par-4 may be related to the balance between cell survival and cell death. Currently, we are using biophysical techniques such as circular …

Multi-Dimensional Numerical Integration On Parallel Architectures, Ioannis Sakiotis, Marc Paterno, Balsa Terzic, Mohammad Zubair, Desh Ranjan

College of Sciences Posters

Multi-dimensional numerical integration is a challenging computational problem that is encountered in many scientific computing applications. Despite extensive research and the development of efficient techniques such as adaptive and Monte Carlo methods, many complex high-dimensional integrands can be too computationally intense even for state-of-the-art numerical libraries such as CUBA, QUADPACK, NAG, and MSL. However, adaptive integration has few dependencies and is very well suited for parallel architectures where processors can operate on different partitions of the integration-space. While existing parallel methods exist, most are simple extensions of their sequential versions. This results in moderate speedup and in many cases failure …

End-To-End Physics Event Generator, Yasir Alanazi, N. Sato, Tianbo Liu, W. Melnitchouk, Michelle P. Kuchera, Evan Pritchard, Michael Robertson, Ryan Strauss, Luisa Velasco, Yaohang Li

College of Sciences Posters

We apply generative adversarial network (GAN) technology to build an event generator that simulates particle production in electron-proton scattering that is free of theoretical assumptions about underlying particle dynamics. The difficulty of efficiently training a GAN event simulator lies in learning the complicated pat- terns of the distributions of the particles physical properties. We develop a GAN that selects a set of transformed features from particle momenta that can be generated easily by the generator, and uses these to produce a set of augmented features that improve the sensitivity of the discriminator. The new Feature-Augmented and Transformed GAN (FAT-GAN) is …

Examining Arctic Melt Pond Dynamics Via High Resolution Satellite Imagery, Austin Abbott, Victoria Hill

College of Sciences Posters

The Arctic Ocean is a rapidly changing environment, and a key observational system for monitoring climate change. The Arctic is going under a rapid transition from thicker, multi-year ice, to thinner first-year ice, that may have many potential consequences. As first year Arctic sea ice begins to retreat in the spring and early summer, melting snow and ice form ponds on the surface- “melt ponds”. These melt ponds increase light transmission to the water column, resulting in warming and increased primary production under the ice. Recent advances in high resolution satellite imagery now allow us to monitor the development and …

Direct Visualization Of 3-Dimensional Force And Energy Map Of A Single Molecular Switch, Abeykoon Mudiyanselage Shashika Darshani Wijerathna, Zaw Myo Win, K. Z. Latt, Yang Li, A. T. Ngo, L. Curtiss, R. Zhang, S. W. Hla, Y. Zhang

College of Sciences Posters

Mechanical properties of molecules adsorbed on materials surfaces are increasingly vital for the applications of molecular thin films. Here, we conduct a fundamental research to induce conformational change mechanically on a single molecule and quantify the driving force needed for such molecular shape switch via a low temperature (~ 5K) Scanning Tunneling Microscope (STM) and Qplus Atomic Force Microscope (Q+AFM). Our measurement maps a three-dimensional landscape for mechanical potential and force at single molecule level with high spatial resolution in all three dimensions of a few angstrom (10^-10 m).

Molecule TBrPP-Co (a cobalt porphyrin) deposited on an atomically clean …

The Magnetic Field Penetration Measurement Of Thin Film And Multilayered Superconductors For Srf Cavities, Iresha Harshani Senevirathne, Jean Delayen

College of Sciences Posters

Radio Frequency (RF) Cavities are used in particle accelerators and they are typically formed from or coated with superconducting materials. High purity niobium is the material of choice for SRF cavities and niobium cavities operate at their theoretical field limits. SRF researchers have begun a significant R&D effort to develop alternative materials to continue to keep up with the demands of new accelerator facilities. To achieve high performance with high accelerating gradient, cavity material should have an ability to persist in superconducting state under high magnetic field without magnetic flux penetration through the cavity wall. Therefore, the magnetic field at …

Influence Of Learner Motivational Dispositions On Mooc Completion, Robert L. Moore, Chuang Wang

STEMPS Faculty Publications

This study examined the role motivational dispositions had on completing a massive open online course (MOOC) using identifiable data from 10,726 students who enrolled in an iteration of the HarvardX MOOC, Super Earths and Life. As part of the course registration process, learners had the option to complete a pre-course survey and self-report information including their level of education, gender and registration motivations. Using these pre-course survey responses, latent profiles linked to learners’ course performance were created. Results showed education background, gender, and motivation were all significantly related to students’ performance. Furthermore, students with intrinsic motivational dispositions performed better than …

A Behavioral Model For Simultaneous Event Execution In Sequential Discrete Event System Simulations, Brian David S. Dilinila

Computational Modeling & Simulation Engineering Theses & Dissertations

The sequential execution of simultaneous events in a discrete event system simulation can cause unexpected behavior in a system. Current studies have provided approaches such as applying a priority order for simultaneous events. However, this is still a problem because executing simultaneous events in sequential order can still lead to two issues of simultaneous event conflicts: the case where simultaneous events cause changes to state variables required by other simultaneous events and the case where two or more simultaneous events cause changes to the same state variables. The objective of this thesis is to develop a behavioral model as a …

Examining Motivation As A Mechanism For The Effects Of Stereotype Threat On Stem Outcomes: A Longitudinal Mediation Analysis, Delaram A. Totonchi

Educational Leadership & Workforce Development Theses & Dissertations

Although African-American students start STEM majors with higher levels of interest compared to their racial majority peers, they drop out of these majors at higher rates. One often tested explanation for this racial disparity is stereotype threat–the anxiety related to being judged stereotypically or the fear of confirming such stereotypes. Stereotype threat negatively impacts academic outcomes through a variety of psychological mechanisms including declined motivation. Accordingly, in this study, I examined expectancy-value beliefs as motivational mechanisms for the effects of stereotype threat on STEM outcomes. Participants were 362 African-American students in introductory chemistry and biology courses who completed surveys at …

Stability Of Low Crested And Submerged Breakwaters: A Reanalysis And Model Development, Christopher P. Burgess

Civil & Environmental Engineering Theses & Dissertations

Low-crested and submerged structures (LCS) play an integral part in the stabilization of shorelines for recreational purposes, yet there are a plethora of empirical models and gaps in the understanding of their stability and damage progression. The objectives were: i) to evaluate the present formulae, ii) explore variable importance, iii) formulate a stability model, iv) extend the current datasets and v) explore a new model for LCS. The literature points to an increasing understanding of the initiation of damage of LCS and recent exploration of the shear stress-induced erosion (van Rijn, 2019). Assessment of two existing models (Kramer, 2006 and …

A Case Study On The Application And Implementation Of Positive Behavioral Interventions And Supports For Students With Emotional Disabilities In Alternative Education, Kira Candelieri Marcari

Counseling & Human Services Theses & Dissertations

Alternative educational settings are serving students with emotional disabilities (ED) at an increasing rate; however, there a paucity of research examining the effectiveness of these programs. A review of the existing literature targeting students with problematic behaviors, supports the use of a positive, preventative, proactive, and systematic approaches such as the three-tiered, Positive Behavioral Interventions and Support (PBIS) framework. Although findings suggest that the PBIS framework is associated with favorable outcomes for students with ED in both traditional and nontraditional settings, few studies have explicitly examined whether PBIS can be effectively modified to fit the needs of students with ED …

Computational And Experimental Investigation Into The Determinants Of Protein Structure, Folding, And Stability In The Β-Grasp Superfamily, John T. Bedford Ii

Chemistry & Biochemistry Theses & Dissertations

Elucidating the mechanisms of protein folding and unfolding is one of the greatest scientific challenges in basic science. The overarching goal is to predict three-dimensional structures from their amino acid sequences. Understanding the determinants of protein folding and stability can be facilitated through the study of evolutionarily related but diverse proteins. Insights can also be gained through the study of proteins from extremophiles that may more closely resemble the primordial proteins. In this doctoral research, three aims were accomplished to characterize the structure, folding and unfolding behavior within the β-grasp superfamily. We propose that the determinants of structure, stability, and …

Perceptions Of Secondary Administrators: Looking At Their Experiences And Practices Supporting Science Instruction, Venicia Ferrell

Educational Leadership & Workforce Development Theses & Dissertations

Secondary school administrators play a vital role as instructional leaders, specifically those that are aimed at improving students’ learning of science content (Hill & Grossman, 2013). Unfortunately, administrators rarely have a background in science (Halverson et al., 2011). Little is known about an administrator's knowledge of science practices and their ability to support science instruction at the secondary level. The purpose of this mixed-methods study was to explore the relationship between the structure and focus of an administrator’s instructional roles and their capacity to foster quality science support and instruction for teachers and students. Administrators' perceptions of effective support actions …

How Interactions With Staff Relate To Students' Early-Career Success At Small Residential Colleges, Donna L. Fenton

STEMPS Theses & Dissertations

College completion in the United States is a complex and incessant problem resistant to change despite decades of effort. To address a precursor to completion, this quantitative study focused on early-career success within college. The problem of this study was to examine settings beyond large research universities and explore how interactions with professional staff affect student success.

Non-experimental research was conducted in Fall 2020, the first full semester of in-person education during the COVID-19 pandemic. Students were recruited from first-year seminars (FYS) and follow-up seminars (FUS) at a small residential college in the Midwest region of the United States. Of …

Cybersecurity Risk Assessment Using Graph Theoretical Anomaly Detection And Machine Learning, Goksel Kucukkaya

Engineering Management & Systems Engineering Theses & Dissertations

The cyber domain is a great business enabler providing many types of enterprises new opportunities such as scaling up services, obtaining customer insights, identifying end-user profiles, sharing data, and expanding to new communities. However, the cyber domain also comes with its own set of risks. Cybersecurity risk assessment helps enterprises explore these new opportunities and, at the same time, proportionately manage the risks by establishing cyber situational awareness and identifying potential consequences. Anomaly detection is a mechanism to enable situational awareness in the cyber domain. However, anomaly detection also requires one of the most extensive sets of data and features …

Exploring Qcd Factorization At Moderate Energy Scales, Eric Alan Moffat

Physics Theses & Dissertations

Asymptotic freedom in QCD facilitates the use of partonic degrees of freedom over short distances, but physical processes are sensitive to a wide range of scales. Thus, it is necessary in QCD calculations to utilize a factorization scheme to separate a process into perturbative and non-perturbative factors. This separation relies on an assumption that one energy scale is infinitely larger than the other scales involved in the process. However, much experimental research in areas such as nucleon structure and quark-hadron duality occur at more moderate energy scales where that basic assumption may not be true but perturbative calculations should still …

Institutional Context Drives Mobility: A Comprehensive Analysis Of How Academic And Economic Factors Relate To International Student Enrollment At United States Higher Education Institutions, Natalie Irby Cruz

Educational Leadership & Workforce Development Theses & Dissertations

International student enrollment (ISE) has become a hallmark of world-class higher education institutions (HEIs), particularly as global student mobility has grown exponentially worldwide in the last several decades. Although the United States (U.S.) has welcomed the largest numbers of international students since the 1950s, ISE shrunk by 10% in the previous three years from an all-time high of 903,127 students in 2016/2017 (IIE, 2019). A synthesis of research studies about international student mobility and enrollment highlights the significant role that academic and economic rationales play for international students who choose the United States. This quantitative, ex post facto study focused …

Perceptions Of Burden In Needs Assessment: An Exploration Of Measurement Creation And Validation, Kim N. Pinckney-Lewis

STEMPS Theses & Dissertations

Needs assessment is a valuable tool in the instructional designer and performance improvement practitioner toolbox. However, it is often avoided due to perceived burdens associated with the needs assessment process. The current research explores needs assessment participants’ perceptions of four proposed components of burden, including: 1) duties, obligations, and responsibilities; 2) cost; 3) needs assessment facilitator skills; and 4) needs assessment facilitator systemic sensitivities. The researcher also developed and tested a Perceived Burden for Needs Assessment Participants Survey (PBNAPS) as a potentially reliable and valid measure of this phenomena. The PBNAPS proved to be both internally consistent (a= 0.86) and …

Wrath And Relationships: Homicide Weapon Choice And Victim Offender Relationships, Joseph Gonnella

Sociology & Criminal Justice Theses & Dissertations

The purpose of this study is to examine the influence that victim-offender relationships and the event circumstances have on homicide weapon choice. From Cornish and Clarke’s Rational Choice theoretical perspective, offenders go through decision- making processes to determine which weapon will be the most effective to meet their goal, based on the circumstances of the event. This study examined the use of three weapon types: firearms, knife/ blunt objects, and personal weapons, amongst victim-offender relationships such as acquaintance, intimate, non-intimate family/friend, and strangers along with circumstances such as homicides committed as the result of a felony, and homicides committed as …