Digital Commons Network^™

Evidence Of Pathogen-Induced Immunogenetic Selection Across The Large Geographic Range Of A Wild Seabird, Hila Levy, Stephen R. Fiddaman, Julianna A. Vianna, Daly Noll, Gemma Clucas, Jasmine K. H. Sidhu, Michael J. Polito, Charles A. Bost, Richard A. Phillips, Sarah Crofts, Gary D. Miller, Pierre Pistorius, Francesco Bonnadonna, Celine Le Bohec, Andres Barbosa, Phil Trathan, Andrea Raya Rey, Laurent A. F. Frantz, Tom Hart, Adrian L. Smith

Faculty Publications

Over evolutionary time, pathogen challenge shapes the immunepheno type of the host to better respond to an incipient threat. The extent and direction of this selection pressure depend on the local pathogen composition, which is in turn determined by biotic and abiotic features of the environment. However, little is known about adaptation to local pathogen threats in wild animals. The Gentoo penguin (Pygoscelis papua) is a species complex that lends itself to the study of immune adaptation because of its circumpolar distribution over a large latitudinal range, with little or no admixture between ''different clades. Inthis study, we examine the …

Altered Gut Microbiota In Infants Is Associated With Respiratory Syncytial Virus Disease Severity, Jeffrey N. Harding, David Siefker, Luan Vu, Dahui You, John Devincenzo, J. F. Pierre, Stephania A. Cormier

Faculty Publications

© 2020 The Author(s). Background: Respiratory syncytial virus (RSV) is the number one cause of lower respiratory tract infections in infants. There are still no vaccines or specific antiviral therapies against RSV, mainly due to the inadequate understanding of RSV pathogenesis. Recent data suggest a role for gut microbiota community structure in determining RSV disease severity. Our objective was to determine the gut microbial profile associated with severe RSV patients, which could be used to help identify at-risk patients and develop therapeutically protective microbial assemblages that may stimulate immuno-protection. Results: We enrolled 95 infants from Le Bonheur during the 2014 …

Coherent Quantum Channel Discrimination, Mark M. Wilde

Faculty Publications

This paper introduces coherent quantum channel discrimination as a coherent version of conventional quantum channel discrimination. Coherent channel discrimination is phrased here as a quantum interactive proof system between a verifier and a prover, wherein the goal of the prover is to distinguish two channels called in superposition in order to distill a Bell state at the end. The key measure considered here is the success probability of distilling a Bell state, and I prove that this success probability does not increase under the action of a quantum super-channel, thus establishing this measure as a fundamental measure of channel distinguishability. …

Beta-Delayed Charged-Particle Spectroscopy Using Texat, J. Bishop, G. V. Rogachev, S. Ahn, E. Aboud, M. Barbui, P. Baron, A. Bosh, E. Delagnes, J. Hooker, C. Hunt, H. Jayatissa, E. Koshchiy, R. Malecek, S. T. Marley, R. O'Dwyer, E. C. Pollacco, C. Pruitt, B. T. Roeder, A. Saastamoinen, L. G. Sobotka, S. Upadhyayula

Faculty Publications

β-delayed charged-particle emission is a sensitive probe of three-body decays in light nuclei. Time Projection Chambers (TPCs) offer a significant advantage over traditional charged-particle spectroscopy techniques due to a low-energy threshold and a high-geometric efficiency (≈4π) which are essential for use with radioactive ion beams where the beam intensities are limited. The technique for high-sensitivity spectroscopy of β-delayed charged-particle emission is shown to be possible using the Texas Active Target (TexAT) TPC in conjunction with the General Electronics for TPCs (GET) system. The benchmark case studied was that of 12Nβ-decay to the first α-unbound state in 12C, the Hoyle state. …

A Simple Index To Quantify And Compare The Magnitude Of Intraspecific Geographic Plumage Colour Variation In Typical Antbirds (Aves: Passeriformes: Thamnophilidae), R S. Marcondes, R T. Brumfield

Faculty Publications

Intraspecific geographic phenotypic variation is a crucial theme in evolutionary biology. Comparing its magnitude across species can provide insights into its ecological and genetic correlates. Here, we developed an index, which we dub the V index, to quantify intraspecific plumage colour variation in typical antbirds (Thamnophilidae), a family which has long interested ornithologists due to a high prevalence of intraspecific variation. The V index is based on a bivariate colour space defined by brightness and redness. Its value for each species equals the mean area occupied by each of its subspecies in that colour space, divided by the area of …

Identification Of Light Sources Using Machine Learning, Chenglong You, Mario A. Quiroz-Juárez, Aidan Lambert, Narayan Bhusal, Chao Dong, Armando Perez-Leija, Amir Javaid, Roberto De J. León-Montiel, Omar S. Magaña-Loaiza

Faculty Publications

The identification of light sources represents a task of utmost importance for the development of multiple photonic technologies. Over the last decades, the identification of light sources as diverse as sunlight, laser radiation, and molecule fluorescence has relied on the collection of photon statistics or the implementation of quantum state tomography. In general, this task requires an extensive number of measurements to unveil the characteristic statistical fluctuations and correlation properties of light, particularly in the low-photon flux regime. In this article, we exploit the self-learning features of artificial neural networks and the naive Bayes classifier to dramatically reduce the number …

The Protodune-Sp Lartpc Electronics Production, Commissioning, And Performance, D. Adams, M. Bass, M. Bishai, C. Bromberg, J. Calcutt, H. Chen, J. Fried, I. Furic, S. Gao, D. Gastler, J. Hugon, J. Joshi, B. Kirby, F. Liu, K. Mahn, M. Mooney, C. Morris, C. Pereyra, X. Pons, V. Radeka, E. Raguzin, D. Shooltz, M. Spanu, A. Timilsina, S. Tufanli, M. Tzanov, B. Viren, W. Gu, Z. Williams, K. Wood, E. Worcester, M. Worcester, G. Yang

Faculty Publications

The ProtoDUNE-SP detector is a large-scale prototype of the Single-Phase (SP) Liquid Argon Time Projection Chamber (LArTPC) design proposed for the Deep Underground Neutrino Experiment (DUNE). 15,360 LArTPC wires are instrumented with low electronic noise pre-amplifier and digitization ASICs integrated into Front End Motherboards (FEMBs) operating at cryogenic temperature within the cryostat. The large number of electronics channels and high performance specifications required a large-scale production electronics quality control effort, careful installation into Anode Plane Assemblies (APAs), and rigorous detector commissioning. This successful collaboration-wide effort achieved a working LArTPC electronics channel percentage of 99.7% (15,318 of 15,360 channels in total), …

Simultaneous Measurement Of The Muon Neutrino Charged-Current Cross Section On Oxygen And Carbon Without Pions In The Final State At T2k, A. Zykova, K. Abe, N. Akhlaq, R. Akutsu, A. Ali, C. Alt, C. Andreopoulos, L. Anthony, M. Antonova, S. Aoki, A. Ariga, T. Arihara, Y. Asada, Y. Ashida, E. T. Atkin, Y. Awataguchi, S. Ban, M. Barbi, G. J. Barker, G. Barr, D. Barrow, M. Batkiewicz-Kwasniak, A. Beloshapkin, F. Bench, V. Berardi, L. Berns, S. Bhadra, S. Bienstock

Faculty Publications

This paper reports the first simultaneous measurement of the double differential muon neutrino charged-current cross section on oxygen and carbon without pions in the final state as a function of the outgoing muon kinematics, made at the ND280 off-axis near detector of the T2K experiment. The ratio of the oxygen and carbon cross sections is also provided to help validate various models' ability to extrapolate between carbon and oxygen nuclear targets, as is required in T2K oscillation analyses. The data are taken using a neutrino beam with an energy spectrum peaked at 0.6 GeV. The extracted measurement is compared with …

First Combined Measurement Of The Muon Neutrino And Antineutrino Charged-Current Cross Section Without Pions In The Final State At T2k, K. Abe, N. Akhlaq, R. Akutsu, A. Ali, C. Alt, C. Andreopoulos, L. Anthony, M. Antonova, S. Aoki, A. Ariga, T. Arihara, Y. Asada, Y. Ashida, E. T. Atkin, Y. Awataguchi, S. Ban, M. Barbi, G. J. Barker, G. Barr, D. Barrow, C. Barry, M. Batkiewicz-Kwasniak, A. Beloshapkin, F. Bench, V. Berardi, L. Berns, S. Bhadra, S. Bienstock

Faculty Publications

This paper presents the first combined measurement of the double-differential muon neutrino and antineutrino charged-current cross sections with no pions in the final state on hydrocarbon at the off-axis near detector of the T2K experiment. The data analyzed in this work comprise 5.8×1020 and 6.3×1020 protons on target in neutrino and antineutrino mode respectively, at a beam energy peak of 0.6 GeV. Using the two measured cross sections, the sum, difference, and asymmetry were calculated with the aim of better understanding the nuclear effects involved in such interactions. The extracted measurements have been compared with the prediction from different Monte …

Fine Structure Of Angular Distribution Of X-Ray Transition Radiation From Multilayered Radiator In Geant4, A. A. Savchenko, A. A. Tishchenko, D. Yu Sergeeva, N. Belyaev, M. Cherry, F. Dachs, S. Doronin, K. Filippov, P. Fusco, F. Gargano, S. Konovalov, F. Loparco, V. Mascagna, M. N. Mazziotta, S. Nechaeva, D. Ponomarenko, A. Romaniouk, E. J. Schioppa, S. Smirnov, Y. Smirnov, M. Soldani, P. Spinelli, M. N. Strikhanov, P. Teterin, V. O. Tikhomirov, K. Vorobev, K. Zhukov

Faculty Publications

The present version of the Transition Radiation (TR) simulation module implemented in the Geant4 toolkit describes very well experimental data for the TR energy distribution; however, it does not allow reproducing the details of angular distribution at small angles. In order to solve this problem, corrections to the existing x-ray TR module in Geant4 are proposed. With these corrections, the results of the simulations are in a good agreement with the angular TR distributions predicted by theory and obtained in the test beam measurements using a 480 um Si pixel detector and Mylar radiator.

Biomolecular Complex Viewed By Dynamic Nuclear Polarization Solid-State Nmr Spectroscopy, Arnab Chakraborty, Fabien Deligey, Jenny Quach, Frederic Mentink-Vigier, Ping Wang, Tuo Wang

Faculty Publications

© 2020 Portland Press Ltd. All rights reserved. Solid-state nuclear magnetic resonance (ssNMR) is an indispensable tool for elucidating the structure and dynamics of insoluble and non-crystalline biomolecules. The recent advances in the sensitivity-enhancing technique magic-angle spinning dynamic nuclear polarization (MAS-DNP) have substantially expanded the territory of ssNMR investigations and enabled the detection of polymer interfaces in a cellular environment. This article highlights the emerging MAS-DNP approaches and their applications to the analysis of biomolecular composites and intact cells to determine the folding pathway and ligand binding of proteins, the structural polymorphism of low-populated biopolymers, as well as the physical …

Large Equatorial Seasonal Cycle During Marinoan Snowball Earth, Yonggang Liu, Jun Yang, Huiming Bao, Huiming Bao, Bing Shen, Yongyun Hu

Faculty Publications

© 2020 The Authors. In the equatorial regions on Earth today, the seasonal cycle of the monthly mean surface air temperature is 1 m) sand wedges were found near the paleoequator in the Marinoan glaciogenic deposits at ∼635 million years ago, indicating a large seasonal cycle (probably >30°C). Through numerical simulations, we show that the equatorial seasonal cycle could reach >30°C at various continental locations if the oceans are completely frozen over, as would have been the case for a snowball Earth, or could reach ∼20°C if the oceans are not completely frozen over, as would have been the case …

Large Equatorial Seasonal Cycle During Marinoan Snowball Earth, Yonggang Liu, Jun Yang, Huiming Bao, Huiming Bao, Bing Shen, Yongyun Hu

Faculty Publications

© 2020 The Authors. In the equatorial regions on Earth today, the seasonal cycle of the monthly mean surface air temperature is 1 m) sand wedges were found near the paleoequator in the Marinoan glaciogenic deposits at ∼635 million years ago, indicating a large seasonal cycle (probably >30°C). Through numerical simulations, we show that the equatorial seasonal cycle could reach >30°C at various continental locations if the oceans are completely frozen over, as would have been the case for a snowball Earth, or could reach ∼20°C if the oceans are not completely frozen over, as would have been the case …

Race, Residence, And Underemployment: Fifty Years In Comparative Perspective, 1968–2017, Tim Slack, Brian C. Thiede, Leif Jensen

Faculty Publications

High underemployment has been a chronic structural feature of the rural United States for decades. In this paper, we assess whether and how inequalities in underemployment between metropolitan (metro) and nonmetropolitan (nonmetro) areas have changed over the course of the last five decades. Drawing on data from the March Current Population Survey from 1968 to 2017, we analyze inequality in the prevalence of underemployment between metro and nonmetro areas of the United States, paying special attention to differences between white, black, and Hispanic workers. Our results show that the underlying risk of underemployment has increased in both metro and nonmetro …

Automated White Matter Hyperintensity Segmentation Using Bayesian Model Selection: Assessment And Correlations With Cognitive Change, Cassidy M. Fiford, Carole H. Sudre, Hugh Pemberton, Phoebe Walsh, Emily Manning, Ian B. Malone, Jennifer Nicholas, Willem H. Bouvy, Owen T. Carmichael, Geert Jan Biessels, M. Jorge Cardoso, Josephine Barnes

Clinical Research Faculty Publications

Accurate, automated white matter hyperintensity (WMH) segmentations are needed for large-scale studies to understand contributions of WMH to neurological diseases. We evaluated Bayesian Model Selection (BaMoS), a hierarchical fully-unsupervised model selection framework for WMH segmentation. We compared BaMoS segmentations to semi-automated segmentations, and assessed whether they predicted longitudinal cognitive change in control, early Mild Cognitive Impairment (EMCI), late Mild Cognitive Impairment (LMCI), subjective/significant memory concern (SMC) and Alzheimer’s (AD) participants. Data were downloaded from the Alzheimer’s disease Neuroimaging Initiative (ADNI). Magnetic resonance images from 30 control and 30 AD participants were selected to incorporate multiple scanners, and were semi-automatically segmented …

Evaluating Temporal Approximation Methods Using Burglary Data, Lukas Oswald, Michael Leitner

Faculty Publications

Law enforcement is very interested in knowing when a crime has happened. Unfortunately, the occurrence time of a crime is often not exactly known. In such circumstances, estimating the most likely time that a crime has happened is crucial for spatio-temporal analysis. The main purpose of this research is to introduce two novel temporal approximation methods, termed retrospective temporal analysis (RTA) and extended retrospective temporal analysis (RTAext). Both methods are compared to six existing temporal approximation methods and subsequently evaluated in order to identify the method that can most accurately estimate the occurrence time of crimes. This research is conducted …

Evaluating The Kisan Credit Card Scheme: Some Results For Bihar And India, Areendam Chanda

Faculty Publications

The Kisan Credit Card (KCC) scheme was introduced in India in 1998-1999 and has since become a flagship programme providing access to short-term credit in the agricultural sector. According to the Government of India, over a 100 million cards had been issued cumulatively by March 2011. Using data from 2005-2006 to 2009-2010, the article critically examines the determinants of KCC lending across states in India and districts in Bihar. We also examine the effects of the scheme on agricultural growth and yields. Our results suggest that states with initially better access to agricultural credit show subsequently greater amounts of KCC …

A Review Of Past, Present, And Future Technologies For Permanent Plugging And Abandonment Of Wellbores And Restoration Of Subsurface Geologic Barriers, Mercy Achang, Li Yanyao, Mileva Radonjic

Faculty Publications

Leakage of oil & gas during fossil fuel exploration, production, and transportation poses a major environmental challenge that impacts the quality of air, water, soil, and ultimately the life on Earth. The result of uncontrolled spills & leakages may cause the contamination of groundwater as well as methane emission into the atmosphere increasing global warming, while the spills in open waters in the case of offshore wellbores impact fragile marine ecosystems. The subsurface conditions where P&A materials need to be placed, the challenges encountered during barrier placement in wellbores under current P&A technologies, contaminations of barrier materials by drilling fluid …

Miocene C4 Grassland Expansion As Recorded By The Indus Fan, Sarah J. Feakins, Hannah M. Liddy, Lisa Tauxe, Valier Galy, Xiaojuan Feng, Jessica E. Tierney, Yunfa Miao, Sophie Warny

Faculty Publications

©2020. American Geophysical Union. All Rights Reserved. In the late Miocene, grasslands spread across the forested floodplains of the Himalayan foreland, but the causes of the ecological transition are still debated. Recent seafloor drilling by the International Ocean Discovery Program (IODP) provides an opportunity to study the transition across a larger region as archived in the Indus submarine fan. We present a multiproxy study of past vegetation change based on analyses of the carbon isotopic composition (δ13C) of bulk organic carbon, plant wax n-alkanes and n-alkanoic acids, and quantification of lignin phenols, charcoal, and pollen. We analyze the hydrogen isotopic …

First & Second Cycles Final Report For: Educational And Workforce Development Through Creation Of Programs In Transportation To Generate Future Careers For Our Students In Navajo Nation Region, Gholam Ehteshami

Publications

Navajo Technical University (NTU) in New Mexico, has made a partnership with the Tran-SET regional center at Louisiana State University, LSU. We have provided learning and training the Native American students in transportation-related Industries to some of STEM students at NTU through these partnerships opportunities. The program was designed and supported by Native American students from high school to STEM undergraduate students. The program was implemented accordingly with four main components: (1). Selected eligible and interested Native American student to paid summer internships to the field and facilities of transportations industries and participate in research summer at LSU. (2). Directed …

Impact Of Direct Fine Motor Intervention On Handwriting, Carlye Breuhl

LSU Master's Theses

Structured fine motor lessons consisting of regulated fine motor materials and feedback is documented in the literature as a strategy for strengthening fine motor skills (Hamilton & Liu, 2017). The purpose of the present study was to determine (1) the mean duration of child engagement with fine motor materials within the classroom during free play, and (2) if direct intervention with fine motor materials, which promote pinch and grip strength, would impact handwriting performance. Children were observed during free play, interacting with materials. The hypothesis suggested interacting with fine motor materials, specifically promoting pinch and grip strength, would result in …

Benthic Nitrogen Dynamics In Response To Deltaic Succession, Anthropogenic Fertilization And Hurricane Events In An Emerging Coastal Deltaic Floodplain Within The Mississippi River Delta Plain, Song Li

LSU Doctoral Dissertations

Increasing concentrations of nitrogenous fertilizer (NO₃^-) in rivers have potentially altered benthic nitrogen (N) cycling in coastal deltaic floodplains at the continental margins of major rivers. Here I evaluated the N removal capacity of a newly emergent coastal deltaic floodplain [Wax Lake Delta (WLD)] within the Mississippi River Delta Plain using continuous flow-through incubations. I investigated the response of benthic N dynamics in WLD to deltaic succession, anthropogenic fertilization and hurricane events. The estimated annual NO₃^- removal of 896 Mg N yr^-1 in WLD accounts for 10 to 27% of total NO₃^{- …}

Effects Of And Preference For Fixed Ratio And Time-Based Exchange Production Schedules In A Token System, Sarah Christian Holmes

LSU Master's Theses

Token systems have been implemented to change behavior across species and settings. Token systems involve token-production, exchange-production, and token-exchange schedules. In the current study, we evaluated the effects of fixed-ratio and yoked time exchange-production schedules on 4 preschoolers’ rate of responding on a marble spooning task, mean pause duration between responses, and percentage of session spent engaging in the target task. Following an initial reversal demonstrating a primary reinforcement effect, we used a multielement design to compare exchange-production schedule conditions and a control condition in which participants earned tokens that were not exchangeable. Following the exchange-production schedule comparison, we examined …

Exploring Effects Of Background Music In A Serious Game On Attention By Means Of Eeg Signals In Children, Fettah Kiran

LSU Master's Theses

Music and Serious Games are separately useful alternative therapy methods for helping people with a cognitive disorder, including Attention Deficit Hyperactivity Disorder (ADHD). The goal of this thesis is to explore the effect of background music on children with and without ADHD. In this study, a simple Tetris game is designed with Beethoven, Mozart music, and no-music. There are different brainwave techniques for recording; among others, the electroencephalography (EEG) allows for the most efficient use of BCI. We recorded the EEG brain signals of the regular and ADHD subjects who played the Tetris we designed according to our protocol that …

Homeward Bound, Kyle Peruch

LSU Master's Theses

This paper explores agency and opposition as the underlining themes in the artworks of Homeward Bound. Both doctrines are important religious teachings that I have used to explore artistic ideas such as tension, balance and perspective. Each artwork displays a point of view on how I have confronted opposition in my lifetime. The sculptures are also meant to offer a sense of encouragement and hope to the viewer as they analyze each piece of art.

Reliability Analysis Of Concrete Gravity Dams Under Earthquake Loads, Anu Abraham

LSU Master's Theses

Dams are infrastructure assets of extreme importance; the failure of which can have catastrophic consequences on adjacent communities. Therefore, it is prudent for authorities to evaluate the safety of existing dams in seismically active regions. This thesis focuses on carrying out a reliability analysis of concrete gravity dams under earthquake loads using an enhanced finite element model. For many years, reliability studies on concrete gravity dams were performed using a finite element model that considered a massless foundation and assumed that water is incompressible. Moreover, the design ground motion was applied without any modification either at the bottom fixed boundary …

Body Temperature And Cardiovascular Control During Exercise In The Heat: Implications For Special Populations And Athletic Performance, Haoyan Wang

LSU Doctoral Dissertations

Exercise in the heat increases the risk of dehydration and hyperthermia, subsequently impaired cardiovascular function and increased thermal stress. The purpose of this dissertation is to determine the fluid balance, cardiovascular function, thermoregulation, and cooling intervention during exercise in the heat. Four novel studies were conducted in this dissertation.

The first and second studies investigated the fluid balance during exercise in the heat across different sports with their special concerns. The first study conducted in female soccer, suggesting most players were in a hypohydration state after practice, and various fluid needs were exhibited by different positions, possibly associated with on-field …

Video-Based Interventions: Teaching Adults And Preschoolers, Philip Ross Richard Iii

LSU Doctoral Dissertations

Long gone are the days in which technology is looked upon as a trivial novelty. Whether evoking positive or negative reactions, advancements in technology continue to alter our daily environments. One such example is Video Based Interventions (VBI). VBI utilize video recording to facilitate the acquisition of various skills and behaviors (Rayner, Denholm, & Sigafoos, 2009). While it may sound like a simple intervention at first, many procedural variations of have been examined in research and practice. The two experiments comprising the current study examined the effectiveness of video models when used in conjunction with other instructional methods. Experiment I …

Evolution Of Computational Thinking Contextualized In A Teacher-Student Collaborative Learning Environment., John Arthur Underwood

LSU Doctoral Dissertations

The discussion of Computational Thinking as a pedagogical concept is now essential as it has found itself integrated into the core science disciplines with its inclusion in all of the Next Generation Science Standards (NGSS, 2018). The need for a practical and functional definition for teacher practitioners is a driving point for many recent research endeavors. Across the United States school systems are currently seeking new methods for expanding their students’ ability to analytically think and to employee real-world problem-solving strategies (Hopson, Simms, and Knezek, 2001). The need for STEM trained individuals crosses both the vocational certified and college degreed …

Temporal Decomposition For Multi-Interval Optimization In Power Systems, Farnaz Safdarian

LSU Doctoral Dissertations

Large optimization problems are frequently solved for power systems operation and analysis of electricity markets. Many of these problems are multi-interval optimization with intertemporal constraints. The size of optimization problems depends on the size of the system and the length of the considered scheduling horizon. Growing the length of the scheduling horizon increases the computational burden significantly and might make solving the problem in a required time span impossible. Many simplifications and approximation techniques are applied to reduce the computational complexity of multi-interval scheduling problems and make them solvable in a reasonable time span. Geographical decomposition is presented in the …