Digital Commons Network^™

Analysis Of Mrna Abundance For Histone Variants, Histone- And Dna-Modifiers In Bovine In Vivo And In Vitro Oocytes And Embryos, J. Duan, L. Zhu, H. Dong, X. Zheng, Z. Jiang, J. Chen, X. C. Tian

Faculty Publications

© 2019, The Author(s). Transcript abundance of histone variants, modifiers of histone and DNA in bovine in vivo oocytes and embryos were measured as mean transcripts per million (TPM). Six of 14 annotated histone variants, 8 of 52 histone methyl-transferases, 5 of 29 histone de-methylases, 5 of 20 acetyl-transferases, 5 of 19 de-acetylases, 1 of 4 DNA methyl-transferases and 0 of 3 DNA de-methylases were abundant (TPM >50) in at least one stage studied. Overall, oocytes and embryos contained more varieties of mRNAs for histone modification than for DNA. Three expression patterns were identified for histone modifiers: (1) transcription before …

Anti-Viral Immunity In The Tumor Microenvironment: Implications For The Rational Design Of Herpes Simplex Virus Type 1 Oncolytic Virotherapy, Paul J.F. Rider, Ifeanyi K. Uche, Larissa Sweeny, Konstantin G. Kousoulas

Faculty Publications

© 2019, Springer Nature Switzerland AG. Purpose of Review: The design of novel herpes simplex type I (HSV-1)–derived oncolytic virotherapies is a balancing act between safety, immunogenicity, and replicative potential. We have undertaken this review to better understand how these considerations can be incorporated into rational approaches to the design of novel herpesvirus oncolytic virotherapies. Recent Findings: Several recent papers have demonstrated that enhancing the potential of HSV-1 oncolytic viruses to combat anti-viral mechanisms present in the tumor microenvironment leads to greater efficacy than their parental viruses. Summary: It is not entirely clear how the immunosuppressive tumor microenvironment affects oncolytic …

One Week Of Continuous Corticosterone Exposure Impairs Hepatic Metabolic Flexibility, Promotes Islet Β-Cell Proliferation, And Reduces Physical Activity In Male C57bl/6 J Mice, Susan J. Burke, Heidi M. Batdorf, Tai Yu Huang, Joseph W. Jackson, Katarina A. Jones, Thomas M. Martin, Kristen E. Rohli, Michael D. Karlstad, Tim E. Sparer, David H. Burk, Shawn R. Campagna, Robert C. Noland, Paul L. Soto, J. Jason Collier

Faculty Publications

© 2019 Elsevier Ltd Clinical glucocorticoid use, and diseases that produce elevated circulating glucocorticoids, promote drastic changes in body composition and reduction in whole body insulin sensitivity. Because steroid-induced diabetes is the most common form of drug-induced hyperglycemia, we investigated mechanisms underlying the recognized phenotypes associated with glucocorticoid excess. Male C57BL/6 J mice were exposed to either 100ug/mL corticosterone (cort) or vehicle in their drinking water. Body composition measurements revealed an increase in fat mass with drastically reduced lean mass during the first week (i.e., seven days) of cort exposure. Relative to the vehicle control group, mice receiving cort had …

Male Dominance Status Regulates Odor-Evoked Processing In The Forebrain Of A Cichlid Fish, Alexandre A. Nikonov, Karen P. Maruska

Faculty Publications

© 2019, The Author(s). The ability to identify odors in the environment is crucial for survival and reproduction. However, whether olfactory processing in higher-order brain centers is influenced by an animal’s physiological condition is unknown. We used in vivo neuron and local field potential (LFP) recordings from the ventral telencephalon of dominant and subordinate male cichlids to test the hypothesis that response properties of olfactory neurons differ with social status. Dominant males had a high percentage of neurons that responded to several odor types, suggesting broad tuning or differential sensitivity when males are reproductively active and defending a territory. A …

Elevated Levels Of Type 2 Respiratory Innate Lymphoid Cells In Human Infants With Severe Respiratory Syncytial Virus Bronchiolitis, Luan D. Vu, David Siefker, Tamekia L. Jones, Dahui You, Ryleigh Taylor, John Devincenzo, Stephania A. Cormier

Faculty Publications

© 2019 by the American Thoracic Society. Rationale: Studies of the immune responses at the site of respiratory syncytial virus (RSV) infection are sparse despite nearly five decades of research into understanding RSV disease. Objectives: To investigate the role of mucosal innate immune responses to RSV and respiratory viral load in infants hospitalized with the natural disease. Methods: Cytokines, viral load, and type 2 innate lymphoid cell (ILC2) levels in nasal aspirates, collected within 24 hours of enrollment, from infants hospitalized with RSV infection were quantified. Measurements and Main Results: RSV severity in infants was categorized based on admission to …

Warnings Of An “Insect Apocalypse” Are Premature, Timothy D. Schowalter, Michael R. Willig, Stephen J. Presley, Manoj Pandey

Faculty Publications

No abstract provided.

A Review Of Interactions Between Insect Biological Control Agents And Semiochemicals, Anamika Sharma, Ramandeep Kaur Sandhi, Gadi V.P. Reddy

Faculty Publications

Biological control agents and semiochemicals have become essential parts of the integrated pest management of insect pests over recent years, as the incorporation of semiochemicals with natural enemies and entomopathogenic microbials has gained significance. The potential of insect pheromones to attract natural enemies has mainly been established under laboratory conditions, while semiochemicals from plants have been used to attract and retain natural enemies in field conditions using strategies such as trap crops and the push–pull mechanism. The best-known semiochemicals are those used for parasitoids–insect pest–plant host systems. Semiochemicals can also aid in the successful dispersal of entomopathogenic microbials. The use …

Early Animal Evolution And Highly Oxygenated Seafloor Niches Hosted By Microbial Mats, Weiming Ding, Lin Dong, Yuanlin Sun, Haoran Ma, Yihe Xu, Runyu Yang, Yongbo Peng, Chuanming Zhou, Bing Shen

Faculty Publications

© 2019, The Author(s). The earliest unambiguous evidence for animals is represented by various trace fossils in the latest Ediacaran Period (550–541 Ma), suggesting that the earliest animals lived on or even penetrated into the seafloor. Yet, the O2 fugacity at the sediment-water interface (SWI) for the earliest animal proliferation is poorly defined. The preferential colonization of seafloor as a first step in animal evolution is also unusual. In order to understand the environmental background, we employed a new proxy, carbonate associated ferrous iron (Fecarb), to quantify the seafloor oxygenation. Fecarb of the latest Ediacaran Shibantan limestone in South China, …

Adjective Learning In Young Typically Developing Children And Children With Developmental Language Disorder: A Retrieval-Based Approach, Laurence B. Leonard, Patricia Deevy, Jeffrey D. Karpicke, Sharon Christ, Christine Weber, Justin B. Kueser, Eileen Haebig

Faculty Publications

Purpose: There are strong retention benefits when learners frequently test themselves during the learning period. This practice of repeated retrieval has recently been applied successfully to children’s word learning. In this study, we apply a repeated retrieval procedure to the learning of novel adjectives by preschool-age children with developmental language disorder (DLD) and their typically developing (TD) peers. We ask whether the benefits of retrieval extend to children’s ability to apply the novel adjectives to newly introduced objects sharing the same characteristics as the objects used during the learning period. Method: Fourteen children with DLD (Mage = 62.64 months) and …

Spatiotemporal Variability Of Fire Characteristics Affect Animal Responses In Pyric Landscapes, Bradley S. Cohen, Thomas J. Prebyl, Bret A. Collier, Michael J. Chamberlain

Faculty Publications

Background: Behavioral responses are the most immediate ways animals interact with their environment, and are primary mechanisms by which individuals mitigate mortality risk while ensuring reproductive success. In disturbance-driven landscapes, animals must adjust behaviors both spatially and temporally to maximize individual fitness. Prescribed fire is an important ecosystem driver in many coniferous forests, as fire cycles nutrients, creates spatially heterogeneous distributions in quantity and quality of forage and cover, and provides opportunities for fire-adapted taxa. Because fire immediately shifts resource distribution, and fire characteristics may drive behavioral responses to recent burns, we examined behavioral responses of 105 Global Positioning System …

Effect Of Two Digestive Enzymes And Ph On The Dsrna Of Endornaviruses Of Bell Pepper And Melon Under In Vitro Conditions, Adair Mccanless, Allison Hultgren, Cesar Escalante, Alyssa Ardt, Rodrigo A. Valverde

Faculty Publications

Purpose: The objective of this investigation was to determine the in vitro effect of two common digestive enzymes, amylase and pepsin, and pH on the integrity of the RI dsRNA of bell pepper endornavirus (BPEV) and Cucumis melo endornavirus (CmEV) evaluated by gel electrophoresis and reverse-transcription PCR (RT-PCR). Methods: We conducted experiments on the in vitro effect of two common digestive enzymes, amylase and pepsin, and pH on the structural integrity of the replicative intermediate (RI) dsRNA of bell pepper endornavirus (BPEV) and Cucumis melo endornavirus (CmEV), evaluated by gel electrophoresis and reverse-transcription polymerase chain reaction. Result: The effect of …

Survival And Inactivation Of Salmonella Enterica Serovar Typhimurium On Food Contact Surfaces During Log, Stationary And Long-Term Stationary Phases, Dorra Djebbi-Simmons, Wenqing Xu, Marlene Janes, Joan King

Faculty Publications

One of the most important transmission routes of foodborne pathogens is through contaminated food contact surfaces. In this study, we investigated the survival and inactivation of Salmonella enterica serovar Typhimurium on frequently used food contact surfaces in household settings, including plastic cutting board (CB), formica laminate (LA), and stainless steel (SS) surfaces. S. Typhimurium at log (6 h), stationary (24 h), or long-term stationary (LTS) (14 days) phases were evaluated. Results showed that, at medium and high microbial loads, LTS phase cells had significantly higher survivor population compared to log and stationary phase cells at 24 h after inoculation (p < 0.05). Disinfection study showed that LTS phase cells were very resilient to sodium hypochlorite when the initial microbial load was high with disinfection efficacy ranging from 26 to 35%. Scanning electron microscopy of these surfaces at 24 h after inoculation with a high microbial load revealed an early biofilm structure.

Alu Insertion Polymorphisms Shared By Papio Baboons And Theropithecus Gelada Reveal An Intertwined Common Ancestry, Jerilyn A. Walker, Vallmer E. Jordan, Jessica M. Storer, Cody J. Steely, Paulina Gonzalez-Quiroga, Thomas O. Beckstrom, Lydia C. Rewerts, Corey P. St. Romain, Catherine E. Rockwell, Jeffrey Rogers, Clifford J. Jolly, Miriam K. Konkel, Mark A. Batzer, R. Alan Harris, Muthuswamy Raveendran, Yue Liu, Shwetha Murali, Tauras P. Vilgalys, Gregg W.C. Thomas, Kymberleigh A. Pagel, Vikas Pejaver, Claudia R. Catacchio, Nicoletta Archidiacono, Mario Ventura, Alessia Marra-Campanale, Antonio Palazzo, Oronzo Capozzi, Archana Raja, John Huddleston, Veronica Searles Quick, Anis Karimpour-Fard, Dominik Schrempf, Marc De Manuel Montero, Konstantinos Billis

Faculty Publications

© 2019 The Author(s). Background: Baboons (genus Papio) and geladas (Theropithecus gelada) are now generally recognized as close phylogenetic relatives, though morphologically quite distinct and generally classified in separate genera. Primate specific Alu retrotransposons are well-established genomic markers for the study of phylogenetic and population genetic relationships. We previously reported a computational reconstruction of Papio phylogeny using large-scale whole genome sequence (WGS) analysis of Alu insertion polymorphisms. Recently, high coverage WGS was generated for Theropithecus gelada. The objective of this study was to apply the high-Throughput "poly-Detect" method to computationally determine the number of Alu insertion polymorphisms shared by T. …

@Houstonpolice: An Exploratory Case Of Twitter During Hurricane Harvey, Seungwon Yang, Brenton Stewart

Faculty Publications

Abstract

Purpose

The purpose of this paper is to examine the Houston Police Department (HPD)’s public engagement efforts using Twitter during Hurricane Harvey, which was a large-scale urban crisis event.

Design/methodology/approach

This study harvested a corpus of over 13,000 tweets using Twitter’s streaming API, across three phases of the Hurricane Harvey event: preparedness, response and recovery. Both text and social network analysis (SNA) techniques were employed including word clouds, n-gram analysis and eigenvector centrality to analyze data.

Findings

Findings indicate that departmental tweets coalesced around topics of protocol, reassurance and community resilience. Twitter accounts of governmental agencies, such as …

The Future Of Reef Ecosystems In The Gulf Of Mexico: Insights From Coupled Climate Model Simulations And Ancient Hot-House Reefs, Kristine L. Delong

Faculty Publications

emperatures (SST), salinity, carbonate chemistry, and acidity. Over the last half-century, some reef communities have been disappearing at an alarming pace. This study focuses on the Gulf of Mexico, where the majority of shallow coral reefs are reported to be in poor or fair condition. We analyze the RCP8.5 ensemble of the Community Earth System Model v1.2 to identify monthly-to-decadal trends in Gulf of Mexico SST. Secondly, we examine projected changes in ocean pH, carbonate saturation state, and salinity in the same coupled model simulations. We find that the joint impacts of predicted higher temperatures and changes in ocean acidification …

The Societal Collapse Of The Southern Lowland Maya Civilization: Don’T Miss The Forest For The Trees, Dwayne Hinton

Honors Capstones

No abstract provided.

Supporting The Algebra I Curriculum With An Introduction To Computational Thinking Course, Michelle M. Laskowski

LSU Master's Theses

The Louisiana Workforce Commission predicts a 33.6% increase in computer science and mathematical occupations by 2022 and the Bureau of Labor Statistics foresees a 16% increase in computer scientists from 2018-2028. Despite these opportunities for job and financial security, the number of Louisiana students enrolled in a nationally accredited computing course is less than 1%, compared to national leaders California and Texas which have 3% and 3.8% of students respectively. Furthermore, the international assessments of mathematical literacy, PISA and TIMMS, both report American students continue to fall further behind their international peers in mathematics achievement.

This thesis rejects these statistics …

Indocyanine-Green-Assisted Near-Infrared Dental Fluorescence Imaging To Detect Common Dental Diseases, As Compared With Dental X-Ray, Yoshita Viraj Holamoge

LSU Master's Theses

Oral health is indicative of a person’s overall health. Even with advances in medical science, dental diseases are very much prevalent in our society. Dental imaging techniques help in the early detection of these dental diseases and eventually avoids the risk of poor oral health as well as medical expenses. Current dental imaging techniques rely mostly on X-ray imaging whose ionizing property is a concern amongst the population. Near-infrared spectrum is known to have tissue penetration property and they belong to the non-ionizing part of the electromagnetic spectrum. This study utilized a contrast agent assisted near-infrared imaging for common dental …

The Effects Of Forced Migration On The Houma Of Louisiana, Jessica R. Parfait

LSU Master's Theses

This thesis seeks to understand the effects of multiple forced migrations on the Indigenous Houma of southern Louisiana. The causes of these migrations have taken many forms such as the dispossession of land and relocating for access to resources. Through ethnographic interviews and historic research, I seek to critically engage the past to understand how it has molded the present and the lives of tribal citizens. I evaluate the power dynamics enacted upon the Houma who have recorded contact with Europeans dating to 1686 but have never been recognized as a sovereign entity by the United States.

Simultaneous Enhancement Of Near-Infrared Emission And Dye Photodegradation In A Racemic Aspartic Acid Compound Via Metal-Ion Modification, Frank R. Fronczek, Jian Xu

Faculty Publications

Changing functionalities of materials using simple methods is an active area of research, as it is "green" and lowers the developing cost of new products for the enterprises. A new small molecule racemic N,N-dimethyl aspartic acid has been prepared. Its structure is determined by single-crystal X-ray diffraction. It is characterized by FTIR, XPS, 1 H NMR, and mass spectroscopy. Its near-infrared luminescence can be enhanced by the combination of metal ions, including Dy3+, Gd3+, Nd3+, Er3+, Sr3+, Y3+, Zn2+, Zr4+, Ho3+, Yb3+, La3+, Pr6+/Pr3+, and Sm3+ ions. An optical chemistry mechanism upon interaction between the sensitizer and activator is proposed. …

Dynamical Modeling In Cell Biology With Ordinary Differential Equations, Renee Marie Dale

LSU Doctoral Dissertations

Dynamical systems have been of interest to biologists and mathematicians alike. Many processes in biology lend themselves to dynamical study. Movement, change, and response to stimuli are dynamical characteristics that define what is 'alive'. A scientific relationship between these two fields is therefore natural. In this thesis, I describe how my PhD research variously related to biological, mathematical, and computational problems in cell biology. In chapter 1 I introduce some of the current problems in the field. In chapter 2, my mathematical model of firefly luciferase in vivo shows the importance of dynamical models to understand systems. Data originally collected …

Evaluation Of Soil Type And Seeding Rate On Winter Cover Crop Species In A Soybean Production System, Donna S. Morgan

LSU Doctoral Dissertations

The integration of winter annual cover crops into a cropping system can potentially improve soil health and crop production, however, the impact of variables such as seeding rates, across two very different soil types, has not been well documented. A two-year study was conducted at the Dean Lee Research Station and Extension Center in Alexandria, Louisiana to evaluate the effects of cover crop seeding rate and soil type on cover crop biomass, weed suppression, soil fertility, and soybean (Glycine max L) growth and yield. Analysis of potential economic impacts was also performed to estimate financial net returns for three …

Bio-Mechanical Characterization Of Adherent Cell Layers With A Pdms Cantilever, Merrel Truly Holley

LSU Doctoral Dissertations

In the last few decades, the mechanical characteristics of human cells has been linked to many physiological processes and pathological conditions, illustrating the importance as effective biomarkers. Mounting research has shown the mechanical force between cells and the extracellular matrix (ECM) plays a vital role in cellular processes such as tissue homeostasis, wound healing, cancer metastasis, and the progression of various diseases. This mechanical force, or the force that a cell produces on its surroundings, is termed as the cellular traction force (CTF). Precise characterization of the CTF can expand our knowledge of these important cellular processes as well as …

Transgenic Control Of Aflatoxin Contamination In Maize Through Host-Induced Gene Silencing Targeting Aspergillus Flavus Genes Encoding Polygalacturonase (P2c) And Versicolorin Dehydrogenase (Aflm), Yenjit Raruang

LSU Doctoral Dissertations

Maize (Zea mays L.) is susceptible to Aspergillus flavus infection and subsequent contamination with aflatoxins, the most potent naturally produced carcinogenic secondary metabolites. Here, the A. flavus gene aflM encoding the versicolorin dehydrogenase in aflatoxin biosynthesis and the p2c gene encoding the polygalacturonase that is involved in infection were selected as targets for suppression through host induced gene silencing (HIGS). A HIGS vector targeting these genes was constructed and introduced into immature B104 maize embryos. Thirteen out of fifteen p2c transformation events and six out of seven aflM events were confirmed positive by PCR. Kernels containing the p2c gene …

Electrification Ionization: Fundamentals And Applications, Bijay Kumar Banstola

LSU Doctoral Dissertations

Electrification ionization is a method to produce ions from solid samples by charge separation. This separation of charge can be enhanced by organic molecules known as matrix compounds to produce highly charged molecules. In this research, new methods were developed for the application of electrification ionization for surface analysis and the ionization mechanism was investigated. First, an electrification ionization matrix was used for tissue imaging using laser ablation. A two-component matrix of 2-nitrophloroglucinol and silica nanoparticles was found to increase the number of multiply charged ions from the tissue. Images of mouse brain with multiply charged ions were obtained. In …

Characterisation Of Ashes From Waste Biomass Power Plants And Phosphorus Recovery, Lijian Leng, Anna A. Bogush, Amitava Roy, Julia A. Stegemann

Faculty Publications

Biowastes, such as meat and bone meal (MBM), and poultry litter (PL), are used as energy sources for industrial combustion in the UK. However, the biomass ashes remaining after combustion, which contain nutrients such as phosphorus, are landfilled rather than utilised. To promote their utilisation, biomass ashes from industries were characterised in terms of their elemental and mineral compositions, phosphorus extractability, and pH-dependent leachability. These ashes were highly alkaline (pH as high as 13), and rich in calcium and phosphorus. The P bio-availabilities in the ash evaluated by Olsen's extraction were low. Hydroxyapatite and potassium sodium calcium phosphate were identified …

Characterisation Of Ashes From Waste Biomass Power Plants And Phosphorus Recovery, Lijian Leng, Anna A. Bogush, Amitava Roy, Julia A. Stegemann

Faculty Publications

Biowastes, such as meat and bone meal (MBM), and poultry litter (PL), are used as energy sources for industrial combustion in the UK. However, the biomass ashes remaining after combustion, which contain nutrients such as phosphorus, are landfilled rather than utilised. To promote their utilisation, biomass ashes from industries were characterised in terms of their elemental and mineral compositions, phosphorus extractability, and pH-dependent leachability. These ashes were highly alkaline (pH as high as 13), and rich in calcium and phosphorus. The P bio-availabilities in the ash evaluated by Olsen's extraction were low. Hydroxyapatite and potassium sodium calcium phosphate were identified …

Effect Of Storage Temperature On The Survival Or Growth Of Listeria Monocytogenes On Whole And Fresh-Cut Produce, Juan F. Moreira Calix

LSU Master's Theses

Whole and fresh-cut produce are minimally processed and, therefore susceptible to microbial contamination. This study examined the survival or growth of Listeria monocytogenes on whole, and fresh-cut produce at different storage temperatures. Fresh fruits (cantaloupes, pears, pineapples, papayas, and watermelon) and vegetables (broccoli, cauliflower, lettuce, kale, and green bell peppers) were cut into 25 g pieces and were spot inoculated with 0.5 mL (8 Log CFU/mL) of Listeria monocytogenes. Inoculated fresh-cut samples were stored at 4°C or 13°C for 6 days. To represent the outer surface of the produce, cantaloupes and green bell pepper disks (20 cm2) were cut with …

Habitat Associations And Reproduction Of Fishes On The Northwestern Gulf Of Mexico Shelf Edge, Elizabeth Marie Keller

LSU Doctoral Dissertations

Several of the northwestern Gulf of Mexico (GOM) shelf-edge banks provide critical hard bottom habitat for coral and fish communities, supporting a wide diversity of ecologically and economically important species. These sites may be fish aggregation and spawning sites and provide important habitat for fish growth and reproduction. Already designated as habitat areas of particular concern, many of these banks are also under consideration for inclusion in the expansion of the Flower Garden Banks National Marine Sanctuary. This project aimed to gain a more comprehensive understanding of the communities and fish species on shelf-edge banks by way of gonad histology, …

Effect Of Biosurfactant And Biochar On Ecosystem Functions And Oil Remediation In Crude Oil Contaminated Wetland Soils, Zhuo Wei

LSU Doctoral Dissertations

Decontamination of oil spill from coastal wetland soils requires a delicate approach. Remediation strategies using biochar, biosurfactant, and nutrient additions have been proposed. However, there is little information on application of these with combination for treatment of crude oil-contaminated wetland soil. Therefore, incubation studies were carried out to investigate the impact of biochar and rhamnolipid (RL) biosurfactant along with nitrogen (N) application on petroleum hydrocarbon degradation in a Louisiana coastal saline marsh and their impacts on greenhouse gas (GHG) emission. Additionally, the toxicity of crude oil as well as remediation materials on coastal wetland ecosystem were assessed at three levels: …