Digital Commons Network^™

Ecogeomorphic Evolution Of Muddy Coastlines: How Biota On A Range Of Scales, From Microscopic Biofilms To Landscape-Scale Vegetation Zonation Patterns, Interact With Physical Processes, Kendall Cole

LSU Doctoral Dissertations

Coastal wetland ecosystems are inherently interdisciplinary; in these spaces, the physical forces of wind and water meet to interact with stabilizing and fortifying vegetation and biota, as well as mud. The combination of these factors build and sustain wetland ecosystems and without the complex feedbacks, they would cease to exist. In this dissertation, I present three studies that focus on ecogeomorphic interactions within coastal wetlands on a range of scales, from microscopic to the entire landscape and highlight the importance of these interactions when predicting future coastal change. The first study examined how biofilms, matrixes of photosynthetic diatoms and their …

Role Of Coastal Environmental Conditions During Austral Winter On Plankton Community Dynamics And The Occurrence Of Pseudo-Nitzschia Spp. And Domoic Acid In Inhambane Province, Mozambique, Holly Kelchner

LSU Master's Theses

Harmful algal blooms (HABs) are increasing globally in frequency, persistence, and geographic extent. HABs pose a threat to economic stability, and ecosystem and human health. To date no incidences of marine toxins produced by phytoplankton have been recorded in Mozambique, which may be due to the absence of a monitoring program and general awareness of the potential threat. This study is the first documentation of the occurrence of a neurotoxin, domoic acid (DA), produced by the diatom genus Pseudo-nitzschia spp. along the east coast of Africa. The coast of Inhambane Province is a biodiversity hotspot where year-round Rhincodon typus (whale …

Introduction To Computational Thinking: A New High School Curriculum Using Codeworld, Fernando Alegre, John Underwoood, Juana Moreno

Faculty Publications

The Louisiana Department of Education partnered with the Gordon A. Cain Center at LSU to pilot a Computing High School Graduation Pathway. The first course in the pathway, Introduction to Computational Thinking (ICT), is designed to teach programming and reinforce mathematical practice skills of nine-grade students, with an emphasis on promoting higher order thinking. In 2017- 18, about 200 students and five teachers participated in the pilot, in 2018-2019 the participation increased to 400 students, and in the current 2019-2020 year about 800 students in 11 schools are involved. After describing the course content and the teacher training, we briefly …

The Function Of Poetry In The Maqamat Al-Hariri, Hussam Almujalli

LSU Doctoral Dissertations

The Maqamat al-Hariri is one of the most notable examples of prose in Arabic literature. Called one of the most eloquent statements of medieval Arabic prose, it also serves as a religious, social, cultural, and political document of the Abbasid Caliphate. As a writer, al-Hariri became a famous figure in Arabic literature after writing his maqamat. This dissertation studies al-Hariri as a poet through his most important prose work, the Maqamat al-Hariri.

Chapter 1 of the dissertation provides an overview of the maqama genre, including its definition, themes, stylistic features, character types, a brief history of maqamat studies, …

Phenotypic And Genotypic Characterization Of Aroma And Cercospora Janseana Resistance In U.S. Rice, Christopher Keith Addison

LSU Doctoral Dissertations

Rice is a staple food for over one-third of the world’s population. With the increasing population, plant breeders must continue to breed for improved varieties. The utilization of markers to applied breeding program can increase the efficiency of selection for key traits. The targeted traits for this research include grain aroma and resistance to the fungal disease narrow brown leaf spot (Cercospora janseana). Our objective was to characterize SNP diversity across the BADH2 gene in publicly available sequence data of a collection of 2,932 rice varieties was characterized to determine the number of gene haplotypes in O. sativa. …

Renal Glomerular Mitochondria Function In Salt-Sensitive Hypertension, Mark Domondon, Iuliia Polina, Anna B. Nikiforova, Regina F. Sultanova, Claudia Kruger, Valeriia Y. Vasileva, Mikhail V. Fomin, Gyda C. Beeson, Anna Liisa Nieminen, Nancy Smythe, Eduardo N. Maldonado, Krisztian Stadler, Daria V. Ilatovskaya

Division of Basic Science Faculty Publications

Salt-sensitive (SS) hypertension is accompanied with an early onset of proteinuria, which results from the loss of glomerular podocytes. Here, we hypothesized that glomerular damage in the SS hypertension occurs in part due to mitochondria dysfunction, and we used a unique model of freshly isolated glomeruli to test this hypothesis. In order to mimic SS hypertension, we used Dahl SS rats, an established animal model. Animals were fed a 0.4% NaCl (normal salt, NS) diet or challenged with a high salt (HS) 4% NaCl diet for 21 days to induce an increase in blood pressure (BP). Similar to previous studies, …

De Novo Assembly Of A High-Quality Reference Genome For The Horned Lark (Eremophila Alpestris), Nicholas A. Mason, Paulo Pulgarin, Carlos Daniel Cadena, Irby J. Lovette

Faculty Publications

Copyright © 2020 Mason et al. The Horned Lark (Eremophila alpestris) is a small songbird that exhibits remarkable geographic variation in appearance and habitat across an expansive distribution. While E. alpestris has been the focus of many ecological and evolutionary studies, we still lack a highly contiguous genome assembly for the Horned Lark and related taxa (Alaudidae). Here, we present CLO_EAlp_1.0, a highly contiguous assembly for E. alpestris generated from a blood sample of a wild, male bird captured in the Altiplano Cundiboyacense of Colombia. By combining short-insert and mate-pair libraries with the ALLPATHS-LG genome assembly pipeline, we generated a …

Mitochondrial Pyruvate Carriers Are Not Required For Adipogenesis But Are Regulated By High-Fat Feeding In Brown Adipose Tissue, Jasmine A. Burrell, Allison J. Richard, William T. King, Jacqueline M. Stephens

Faculty Publications

© 2020 The Obesity Society. Objective: The objectives of this study were to assess the role of mitochondrial pyruvate carriers (MPCs) in adipocyte development in vitro and determine whether MPCs are regulated in vivo by high-fat feeding in male and female C57BL/6J mice. Methods: This study utilized small interfering RNA-mediated knockdown to assess the requirement of MPC1 for adipogenesis in the 3T3-L1 model system. Treatment with UK-5099, a potent pharmacological MPC inhibitor, was also used to assess the loss of MPC activity. Western blot analysis was performed on adipose tissue samples from mice on a low-fat diet or a high-fat …

Review: Enhancing Intramuscular Fat Development Via Targeting Fibro-Adipogenic Progenitor Cells In Meat Animals, X. Li, X. Fu, G. Yang, M. Du

Faculty Publications

© 2019 The Animal Consortium. In the livestock industry, subcutaneous and visceral fat pads are considered as wastes, while intramuscular fat or marbling fat is essential for improving flavor and palatability of meat. Thus, strategies for optimizing fat deposition are needed. Intramuscular adipocytes provide sites for lipid deposition and marbling formation. In the present article, we addressed the origin and markers of intramuscular adipocyte progenitors-fibro-adipogenic progenitors (FAPs), as well as the latest progresses in mechanisms regulating the proliferation and differentiation of intramuscular FAPs. Finally, by targeting intramuscular FAPs, possible nutritional manipulations to improve marbling fat deposition are discussed. Despite recent …

Ncapg Dynamically Coordinates The Myogenesis Of Fetal Bovine Tissue By Adjusting Chromatin Accessibility, Xin Hu, Yishen Xing, Xing Fu, Qiyuan Yang, Ling Ren, Yahui Wang, Qian Li, Junya Li, Lupei Zhang

Faculty Publications

© 2020 by the authors. Licensee MDPI, Basel, Switzerland. NCAPG is a subunit of condensin I that plays a crucial role in chromatin condensation during mitosis. NCAPG has been demonstrated to be associated with farm animal growth traits. However, its role in regulating myoblast differentiation is still unclear. We used myoblasts derived from fetal bovine tissue as an in vitro model and found that NCAPG was expressed during myogenic differentiation in the cytoplasm and nucleus. Silencing NCAPG prolonged the mitosis and impaired the differentiation due to increased myoblast apoptosis. After 1.5 days of differentiation, silencing NCAPG enhanced muscle-specific gene expression. …

Genomic Analysis For Virulence Determinants In Feline Herpesvirus Type-1 Isolates, Andrew C. Lewin, Lyndon M. Coghill, Gillian J. Mclellan, Ellison Bentley, Konstantin G. Kousoulas

Faculty Publications

© 2019, Springer Science+Business Media, LLC, part of Springer Nature. Feline herpesvirus type 1 (FHV-1) is a widespread cause of respiratory and ocular disease in domestic cats. A spectrum of disease severity is observed in host animals, but there has been limited prior investigation into viral genome factors which could be responsible. Stocks of FHV-1 were established from oropharyngeal swabs obtained from twenty-five cats with signs of infection housed in eight animal shelters around the USA. A standardized numerical host clinical disease severity scoring scheme was used for each cat from which an isolate was obtained. Illumina MiSeq was used …

Intramuscular Vaccination Of Mice With The Human Herpes Simplex Virus Type-1(Hsv-1) Vc2 Vaccine, But Not Its Parental Strain Hsv-1 (F) Confers Full Protection Against Lethal Ocular Hsv-1 (Mckrae) Pathogenesis, Shan K. Naidu, Rafiq Nabi, Nagarjuna R. Cheemarla, Brent A. Stanfield, Paul J. Rider, Nithya Jambunathan, Vladimir N. Chouljenko, Renee Carter, Fabio Del Piero, Ingeborg Langohr, Konstantin G. Kousoulas

Faculty Publications

Copyright: © 2020 Naidu et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Herpes simplex virus type-1 (HSV-1) can cause severe ocular infection and blindness. We have previously shown that the HSV-1 VC2 vaccine strain is protective in mice and guinea pigs against genital herpes infection following vaginal challenge with HSV-1 or HSV-2. In this study, we evaluated the efficacy of VC2 intramuscular vaccination in mice against herpetic keratitis following ocular challenge with …

Perinatal Maternal Antibiotic Exposure Augments Lung Injury In Offspring In Experimental Bronchopulmonary Dysplasia, Kent A. Willis, David T. Siefker, Michael M. Aziz, Catrina T. White, Naiha Mussarat, Charles K. Gomes, Amandeep Bajwa, Joseph F. Pierre, Stephania A. Cormier, Ajay J. Talati

Faculty Publications

Copyright © 2020 the American Physiological Society. During the newborn period, intestinal commensal bacteria influence pulmonary mucosal immunology via the gut-lung axis. Epidemiological studies have linked perinatal antibiotic exposure in human newborns to an increased risk for bronchopulmonary dysplasia, but whether this effect is mediated by the gut-lung axis is unknown. To explore antibiotic disruption of the newborn gut-lung axis, we studied how perinatal maternal antibiotic exposure influenced lung injury in a hyperoxia-based mouse model of bronchopulmonary dysplasia. We report that disruption of intestinal commensal colonization during the perinatal period promotes a more severe bronchopulmonary dysplasia phenotype characterized by increased …

Mice Without A Microbiome Are Partially Protected From Lung Injury By Hyperoxia, Kent A. Willis, Joseph F. Pierre, Stephania A. Cormier, Ajay J. Talati

Faculty Publications

No abstract provided.

Respiratory Syncytial Virus Disease Severity Is Associated With Distinct Cd8+ T-Cell Profiles, David T. Siefker, Luan Vu, Dahui You, Andrew Mcbride, Ryleigh Taylor, Tamekia L. Jones, John Devincenzo, Stephania A. Cormier

Faculty Publications

Copyright © 2020 by the American Thoracic Society. Rationale: Respiratory syncytial virus (RSV) causes significant morbidity and mortality in infants worldwide. Although T-helper type 2 (Th2) cell pathology is implicated in severe disease, the mechanisms underlying the development of immunopathology are incompletely understood. Objectives: We aimed to identify local immune responses associated with severe RSV in infants. Our hypothesis was that disease severity would correlate with enhanced Th2 cellular responses. Methods: Nasal aspirates were collected from infants hospitalized with severe (admitted to the pediatric ICU) or moderate (maintained in the general ward) RSV disease at 5 to 9 days after …

Maize Yield In Smallholder Agriculture System-An Approach Integrating Socioeconomic And Crop Management Factors, Sudarshan Dutta, Somsubhra Chakraborty, Rupak Goswami, Hirak Banerjee, Kaushik Majumdar, Bin Li, M. L. Jat

Faculty Publications

Yield gaps of maize (Zea mays L.) in the smallholder farms of eastern India are outcomes of a complex interplay of climatic variations, soil fertility gradients, socio-economic factors, and differential management intensities. Several machine learning approaches were used in this study to investigate the relative influences of multiple biophysical, socio-economic, and crop management features in determining maize yield variability using several machine learning approaches. Soil fertility status was assessed in 180 farms and paired with the surveyed data on maize yield, socio-economic conditions, and agronomic management. The C&RT relative variable importance plot identified farm size, total labor, soil factors, seed …

Rubusoside-Assisted Solubilization Of Poorly Soluble C6-Ceramide For A Pilot Pharmacokinetic Study, Jianzhong Chen, Sachin K. Khiste, Xiaomei Fu, Kartik R. Roy, Yixuan Dong, Jian Zhang, Mei Liu, Yong Yu Liu, Zhijun Liu

Faculty Publications

Although C6-Ceramide has attracted much attention as a possible tumor suppressor, the delivery of C6-Ceramide is still challenging due to its inherent hydrophobicity and insolubility. In this study we explored the use of a natural compound rubusoside (RUB) as a solubilizer to enhance the solubility of a fluorescence-labeled C6-Ceramide (NBD C6-Ceramide) and to characterize its pharmacokinetics and tissue distribution in an animal model. RUB significantly enhanced the solubility of NBD C6-Ceramide by forming nanomicelles, and efficiently delivered NBD C6-Ceramide in rats by oral and intravenous administration. RUB loaded 1.96 % of NBD C6-Ceramide in the nanomicelles and solubilized it to …

Ceramide–Rubusoside Nanomicelles, A Potential Therapeutic Approach To Target Cancers Carrying P53 Missense Mutations, Sachin K. Khiste, Zhijun Liu, Kartik R. Roy, Mohammad B. Uddin, Salman B. Hosain, Xin Gu, Sami Nazzal, Ronald A. Hill, Yong Yu Liu

Faculty Publications

Ceramide (Cer) is an active cellular sphingolipid that can induce apoptosis or proliferation-arrest of cancer cells. Nanoparticle-based delivery offers an effective approach for overcoming bioavailability and biopharmaceutics issues attributable to the pronounced hydrophobicity of Cer. Missense mutations of the protein p53, which have been detected in approximately 42% of cancer cases, not only lose the tumor suppression activity of wild-type p53, but also gain oncogenic functions promoting tumor progression and drug resistance. Our previous works showed that cellular Cer can eradicate cancer cells that carry a p53 deletion-mutation by modulating alternative pre-mRNA splicing, restoring wild-type p53 protein expression. Here, we …

Trans-Disciplinary Responses To Climate Change: Lessons From Rice-Based Systems In Asia, Jon Hellin, Jean Balié, Eleanor Fisher, Ajay Kohli, Melanie Connor, Sudhir Yadav, Virender Kumar, Timothy J. Krupnik, Bjoern Ole Sander, Joshua Cobb, Katherine Nelson, Tri Setiyono, Ranjitha Puskur, Pauline Chivenge, Martin Gummert

Faculty Publications

Climate change will continue to have a largely detrimental impact on the agricultural sector worldwide because of predicted rising temperatures, variable rainfall, and an increase in extreme weather events. Reduced crop yields will lead to higher food prices and increased hardship for low income populations, especially in urban areas. Action on climate change is one of the Sustainable Development Goals (SDG 13) and is linked to the Paris Climate Agreement. The research challenge posed by climate change is so complex that a trans-disciplinary response is required, one that brings together researchers, practitioners, and policy-makers in networks where the lines between …

Minor Preoccupations, Major Endeavors: The Community Of Poets And Painters, Adelaide M. Russo

Faculty Publications

In Au fond des images (2003), Jean-Luc Nancy introduces concepts about the image, pertinent to understanding the minor genre of poets’ writings on painting. Nancy begins by stating that the image is sacred, clarifying that the sacred should not be confused with the religious, which is based on rituals. The sacred signifies that which is separated, excluded, distanced. The image’s attraction is derived from this, from its untouchable nature. Because of its separation from the viewer, the image inspires a desire for intimacy, and draws the spectator to it. Poets’ texts on painting constitute minor forms: prefaces to catalogs, criticism, …

Evaluation Of Ultraviolet (Uv-C) Light Treatment For Microbial Inactivation In Agricultural Waters With Different Levels Of Turbidity, Achyut Adhikari, Katheryn J. Parraga Estrada, Vijay S. Chhetri, Marlene Janes, Kathryn Fontenot, John C. Beaulieu

Faculty Publications

Produce growers using surface or well water to irrigate their crops may require an appropriate water treatment system in place to meet the water quality standard imposed by FSMA Produce Safety Rule. This study evaluated the potential of using ultraviolet (UV-C) treatment in reducing the microbial population in agricultural water. Waters with turbidity levels ranging from 10.93 to 23.32 Nephelometric Turbidity Units (NTU) were prepared by mixing pond water and well water. The waters were inoculated with a cocktail of generic Escherichia coli (ATCC 23716, 25922, and 11775) and then treated with UV-C light (20–60 mJ/cm2). All tested doses of …

Plumage Patterns: Ecological Functions, Evolutionary Origins, And Advances In Quantification, Nicholas A. Mason, Rauri C.K. Bowie

Faculty Publications

Birds exhibit remarkable variation in plumage patterns, both within individual feathers and among plumage patches. Differences in the size, shape, and location of pigments and structural colors comprise important visual signals involved in mate choice, social signaling, camouflage, and many other functions. While ornithologists have studied plumage patterns for centuries, recent technological advances in digital image acquisition and processing have transformed pattern quantification methods, enabling comprehensive, detailed datasets of pattern phenotypes that were heretofore inaccessible. In this review, we synthesize recent and classic studies of plumage patterns at different evolutionary and organismal scales and discuss the various roles that plumage …

On The Usefulness Of Parental Lines Gwas For Predicting Low Heritability Traits In Tropical Maize Hybrids, Giovanni Galli, Filipe Couto Alves, Júlia Silva Morosini, Roberto Fritsche-Neto

Faculty Publications

Genome-wide association studies (GWAS) is one of the most popular methods of studying the genetic control of traits. This methodology has been intensely performed on inbred genotypes to identify causal variants. Nonetheless, the lack of covariance between the phenotype of inbred lines and their offspring in cross-pollinated species (such as maize) raises questions on the applicability of these findings in a hybrid breeding context. To address this topic, we incorporated previously reported parental lines GWAS information into the prediction of a low heritability trait in hybrids. This was done by marker-assisted selection based on significant markers identified in the lines …

Pattern Of Regional White Matter Hyperintensity Volume In Mild Cognitive Impairment Subtypes And Associations With Decline In Daily Functioning, Katherine J. Bangen, Kelsey R. Thomas, Alexandra J. Weigand, Danielle L. Sanchez, Lisa Delano-Wood, Emily C. Edmonds, Owen T. Carmichael, Christopher G. Schwarz, Adam M. Brickman, Mark W. Bondi

Clinical Research Faculty Publications

White matter hyperintensities (WMHs), a marker of small-vessel cerebrovascular disease, increase risk for mild cognitive impairment (MCI). Less is known about whether regional WMHs distinguish MCI subtypes and predict decline in everyday functioning. About 618 Alzheimer's Disease Neuroimaging Initiative participants (301 cognitively normal [CN]; 232 amnestic MCI [aMCI]; 85 nonamnestic MCI [naMCI]) underwent neuropsychological testing, MRI, and assessment of everyday functioning. aMCI participants showed greater temporal (p = 0.002) and occipital WMHs (p = 0.030) relative to CN whereas naMCI participants had greater frontal (p = 0.045), temporal (p = 0.003), parietal (p = 0.018), and occipital (p < 0.001) WMH compared with CN. Relative to those with aMCI, individuals with naMCI showed greater occipital WMH (p = 0.013). Greater WMH in temporal (p = 0.001) and occipital regions (p = 0.006) was associated with faster decline in everyday functioning across the sample. Temporal lobe WMHs were disproportionately associated with accelerated functional decline among naMCI (p = 0.045). Regional WMH volumes vary across cognitive groups and predict functional decline. Cerebrovascular markers may help identify individuals at risk for decline and distinguish subtypes of cognitive impairment.

Energetic And Environmental Constraints On The Community Structure Of Benthic Microbial Mats In Lake Fryxell, Antarctica, Megan L. Dillon, Ian Hawes, Anne D. Jungblut, Tyler J. Mackey, Jonathan A. Eisen, Peter T. Doran, Dawn Y. Sumner

Faculty Publications

© 2020 FEMS 2020. Ecological communities are regulated by the flow of energy through environments. Energy flow is typically limited by access to photosynthetically active radiation (PAR) and oxygen concentration (O2). The microbial mats growing on the bottom of Lake Fryxell, Antarctica, have well-defined environmental gradients in PAR and (O2). We analyzed the metagenomes of layers from these microbial mats to test the extent to which access to oxygen and light controls community structure. We found variation in the diversity and relative abundances of Archaea, Bacteria and Eukaryotes across three (O2) and PAR conditions: high (O2) and maximum PAR, variable …

Inter-War Maharajas As Art Patrons Betwen Traditionalism And Modernism, Humaira Hossain

LSU Master's Theses

India had carried a traditional history, some of those grew through time and some were fetched from Persia during the Mughal period. From the time of the British-Raj, India had experienced a completely diverse culture derived from western. This Thesis discusses the interests of Indian Maharajas in European culture which grew their attraction towards European art. More precisely I am going to talk about Maharaja Yashwant Rao Holker of Indore and Maharaja Jagjit Singh from Kapurthala, their changing taste away from the tradition. Both Maharaja was highly convinced by the European lifestyle, which reflects their changing tastes towards art. They …

Soil Health On A Small-Scale Sustainable Vegetable Farm In South Louisiana, Allison Guidroz

LSU Master's Theses

One of the biggest challenges facing the world today is the need to provide nutritious food to an ever-growing population in a way that does not compromise the ecosystem services of the soil that are necessary for life. The evidence for widespread degradation of the soil has been a major contributor in the increased interest in soil health. Most of the research in soil health has focused on field crops, which has led to a gap in the research of soil health on vegetable cropping systems. This objective of this study was to analyze the health of the soil on …

Emerson's Idealist Poetics: Emerson, Rödl, And The Life Of Nature, Robert Darren Hutchinson

LSU Doctoral Dissertations

In this dissertation, I articulate a hermeneutics for reading Ralph Waldo Emerson’s seminal text Nature through drawing on the insights of the contemporary philosopher Sebastian Rödl. Particularly, the performative, literary characteristics of Rödl’s quite conceptual work resonate with the poetic strategies that Emerson employs in Nature. In the section on the work of Rödl, I make the performative aspects of his philosophy explicit through a close reading of the way self-consciousness happens in his texts through the language he employs. Rödl refers to his elucidation of self-consciousness as idealism. In the section on Emerson, I show how Emerson’s project …

Evaluation Of Space Use And Movement By Wild Turkey (Meleagris Gallopavo) During Extreme Climatic Disturbances And Annual Phenological States, David J. Moscicki

LSU Master's Theses

Space use is driven by both intrinsic and extrinsic factors across space and time. Meaning a species demography and habitat requirements may vary across landscapes. Recent studies on wild turkeys (Meleagris gallopavo spp., hereafter turkey) have shown both direct and indirect demographic impacts of climatically driven events on turkey populations. Similarly, there is an abundance of information documenting turkey demographic parameters and space use, but few studies have addressed breeding phenology in great detail. We evaluated the impact on space use and movement patterns of Eastern wild turkeys (M. g. silvestris; n = 20) and Rio Grande wild …

Impacts Of The Deepwater Horizon Oil Spill On Reproduction And Ontogeny Of Gulf Killifish (Fundulus Grandis), Charles Alexander Brown

LSU Doctoral Dissertations

On April 20, 2010, the Deepwater Horizon oil spill released an estimated 779 million liters of Macondo-252 crude oil into the Gulf of Mexico, making it the largest marine oil spill in history. Over a thousand kilometers of marshland that many species of fish use as a spawning grounds and nurseries was oiled, exposing breeding adult fish and their offspring to oil. My dissertation investigates the impacts of the Deepwater Horizon oil spill and associated remediation efforts on the reproduction and ontogeny of a sentinel ecotoxicological species, the Gulf killifish (Fundulus grandis). Concerns were raised regarding use of …