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Ecological Niches, Species Distributions, And Biogeographic Processes In Rodents On Neotropical Sky Islands, Mariano Soley

Dissertations, Theses, and Capstone Projects

This dissertation focused on the methodological and theoretical improvement of correlative ecological niche models (ENMs) to better understand the processes governing species distributions and associated evolutionary divergence in rodents inhabiting mesic conditions in the Neotropics. Focusing on a widespread rodent from northern South America (Heteromys anomalus), in the first chapter I proposed and tested a methodological approach to surmount the challenge of incorporating environmental information from the margins of species geographic ranges into ENMs. In so doing, I argue how populations that exist on the borders of species' local ranges (spatial margins) can lead to exaggerated estimates of their niches …

Ethnomedical, Ecological And Phytochemical Studies Of The Palauan Flora, Christopher Kitalong

Dissertations, Theses, and Capstone Projects

There has been a serious deterioration of Palauan culture, language and traditional practices over the last century. To promote health and avoid this deterioration of tradition, ecological, ethnobotanical and phytochemical studies have been carried out on the plant Phaleria nisidai Kaneh. (Thymelaeaceae), "Delal a Kar", Palauan for "Mother of Medicine". This study is the first study that sets the foundations for the development of natural Palauan therapeutics, through validation of ethnomedically significant plants. Validations of these plants is done through documenting Palauan plant ethnomedical data; mapping the distribution of Palauan plants on limestone Rock Islands; and analyzing ethnopharmacological and phytochemical …

Low Risk Of Attrition Among Adults On Antiretroviral Therapy In The Rwandan National Program: A Retrospective Cohort Analysis Of 6, 12, And 18 Month Outcomes, Harriet Nuwagaba-Biribonwoha, Aleksandra Jakubowski, Veronicah Mudisha, Paulin Basinga, Anita Asiimwe, Denis Nash, Batya Elul

Publications and Research

Background
We report levels and determinants of attrition in Rwanda, one of the few African countries with universal ART access.

Methods
We analyzed data abstracted from health facility records of a nationally representative sample of adults [≥18 years] who initiated ART 6, 12, and 18 months prior to data collection; and collected facility characteristics with a health facility assessment questionnaire. Weighted proportions and rates of attrition [loss to follow-up or death] were calculated, and patient- and health facility-level factors associated with attrition examined using Cox proportional hazard models.

Results
1678 adults initiated ART 6, 12 and 18 months prior to …

Borreliabase: A Phylogeny-Centered Browser Of Borrelia Genomes, Lia Di, Pedro E. Pagan, Daniel Packer, Che L. Martin, Saymon Akther, Girish Ramrattan, Emmanuel F. Mongodin, Claire M. Fraser, Steven E. Schutzer, Benjamin J. Luft, Sherwood R. Casjens, Wei-Gang Qiu

Publications and Research

Background The bacterial genus Borrelia (phylum Spirochaetes) consists of two groups of pathogens represented respectively by B. burgdorferi, the agent of Lyme borreliosis, and B. hermsii, the agent of tick-borne relapsing fever. The number of publicly available Borrelia genomic sequences is growing rapidly with the discovery and sequencing of Borrelia strains worldwide. There is however a lack of dedicated online databases to facilitate comparative analyses of Borrelia genomes. Description We have developed BorreliaBase, an online database for comparative browsing of Borrelia genomes. The database is currently populated with sequences from 35 genomes of eight Lyme-borreliosis (LB) group Borrelia species and …

Hispanic Residential Ethnic Density And Depression In Post-Acute Coronary Syndrome Patients: Re-Thinking The Role Of Social Support, Ellen-Ge Denton, Jonathan A. Shaffer, Carmela Alcantra, Lynn Clemow, Elizabeth Denton

Publications and Research

Background: The ethnic density hypothesis suggests that ethnic density confers greater social support and consequently protects against depressive symptoms in ethnic minority individuals. However, the potential benefits of ethnic density have not been examined in individuals who are facing a specific and salient life stressor.

Aims: We examined the degree to which the effects of Hispanic ethnic density on depressive symptoms are explained by socioeconomic resources and social support.

Methods: Patients with acute coronary syndrome (ACS, N = 472) completed the Beck Depression Inventory (BDI) and measures of demographics, ACS clinical factors and perceived social support. Neighborhood characteristics, including median …

Migration Plasticity As An Adaptation To Climate Change: The Spatial Distribution And Abundance Of A Subset Of Neotropical Migrant Landbirds Wintering In The Northeastern United States, Juliette Goulet

Dissertations, Theses, and Capstone Projects

There is a need for accurate predictions of the effects of climate change on wildlife populations. Bioclimatic relationships however are potentially complicated by various environmental factors operating at multiple spatial and temporal scales. Therefore, in order to test the hypothesis that climate constraints of winter bird distributions are modified by species-specific responses to weather and climate, I relied on Christmas Bird Count data (CBC). With nearly 100 years of data, the CBC is a valuable source of information on historic and recent changes in the status and distribution of birds during the early winter period in the United States and …

Assessing The Performance Of A Northern Gulf Of Mexico Tidal Model Using Satellite Imagery, Stephen C. Medeiros, Scott C. Hagen, Naira Chaouch, Jesse Feyen, Marouane Temimi, John F. Weishampel, Yuji Funakoshi, Reza Khanbilvardi

Publications and Research

Tidal harmonic analysis simulations along with simulations spanning four specific historical time periods in 2003 and 2004 were conducted to test the performance of a northern Gulf of Mexico tidal model. A recently developed method for detecting inundated areas based on integrated remotely sensed data (i.e., Radarsat-1, aerial imagery, LiDAR, Landsat 7 ETM+) was applied to assess the performance of the tidal model. The analysis demonstrates the applicability of the method and its agreement with traditional performance assessment techniques such as harmonic resynthesis and water level time series analysis. Based on the flooded/non-flooded coastal areas estimated by the integrated remotely …

Global Trends In Seasonality Of Normalized Difference Vegetation Index (Ndvi), 1982–2011, J. Ronald Eastman, Florencia Sangermano, Elia Axinia Machado, John Rogan, Assaf Anyamba

Publications and Research

A 30-year series of global monthly Normalized Difference Vegetation Index (NDVI) imagery derived from the Global Inventory Modeling and Mapping Studies (GIMMS) NDVI3g archive was analyzed for the presence of trends in changing seasonality. Using the Seasonal Trend Analysis (STA) procedure, over half (56.30%) of land surfaces were found to exhibit significant trends. Almost half (46.10%) of the significant trends belonged to three classes of seasonal trends (or changes). Class 1 consisted of areas that experienced a uniform increase in NDVI throughout the year, and was primarily associated with forested areas, particularly broadleaf forests. Class 2 consisted of areas experiencing …

Association Of Adherence Support And Outreach Services With Total Attrition, Loss To Follow-Up, And Death Among Art Patients In Sub-Saharan Africa, Matthew R. Lamb, Wafaa M. El-Sadr, Elvin Geng, Denis Nash

Publications and Research

Background Loss to follow-up (LTF) after antiretroviral therapy (ART) initiation is common in HIV clinics. We examined the effect of availability of adherence support and active patient outreach services on patient attrition following ART initiation. Methods and Findings This ecologic study examined clinic attrition rates (total attrition, LTF, and death) among 232,389 patients initiating ART at 349 clinics during 2004–2008 in 10 sub-Saharan African countries, and cohort attrition (proportion retained at 6 and 12 months after ART initiation) among a subset of patients with follow-up information (n = 83,389). Log-linear regression compared mean rates of attrition, LTF, and death between …

Social Disorganization And The Public Level Of Crime Control: A Spatial Analysis Of Ecological Predictors Of Homicide Rates In Bogota, Colombia, Gipsy Escobar

Dissertations, Theses, and Capstone Projects

Research in the social disorganization tradition has found community disadvantage to be one of the strongest and most consistent macro-level predictors of homicides in urban areas in the United States (Pratt & Cullen 2005). This dissertation empirically tests the applicability of ecological theories of crime to the spatial distribution of homicides in Bogota, Colombia, while proposing alternative measures of social disorganization that are analogous to those used in the American literature but that are more reflective of both social realities and data availability in Colombia. The study used data from several sources including official homicide figures from the National Institute …

Brunkow Studies Health Of Midwest Freshwaters, Aldemaro Romero Jr.

Publications and Research

No abstract provided.

The Genome Of The Green Anole Lizard And A Comparative Analysis With Birds And Mammals, Jessica Alföldi, Federica Di Palma, Manfred Grabherr, Christina Williams, Lesheng Kong, Evan Mauceli, Pamela Russell, Craig B. Lowe, Richard Glor, Jacob D. Jaffe, David A. Ray, Stéphane Boissinot, Andrew M. Shedlock, Christopher Botka, Todd A. Castoe, John K. Colbourne, Matthew K. Fujita, Ricardo Godinez Moreno, Boudewijn F. Ten Hallers, David Haussler, Peter Novick

Publications and Research

The evolution of the amniotic egg was one of the great evolutionary innovations in the history of life, freeing vertebrates from an obligatory connection to water and thus permitting the conquest of terrestrial environments1. Among amniotes, genome sequences are available for mammals2 and birds3–5, but not for non-avian reptiles. Here we report the genome sequence of the North American green anole lizard, Anolis carolinensis. We find that A. carolinensis microchromosomes are highly syntenic with chicken microchromosomes, yet do not exhibit the high GC and low repeat content that are characteristic of avian microchromosomes3. Also, A. carolinensis mobile elements are very …

Administrative Censoring In Ecological Analyses Of Autism And A Bayesian Solution, Scott M. Bartell, Thomas A. Lewandowski

Publications and Research

Widely cited ecological analyses of autism have reported associations with mercury emissions, with precipitation, and race at the level of counties or school districts. However, state educational agencies often suppress any low numerical autism counts before releasing data—a phenomenon known as “administrative censoring.” Previous analyses did not describe appropriate methods for censored data analysis; common substitution or exclusion methods are known to introduce bias and produce artificially narrow confidence intervals. We apply a Bayesian censored random effects Poisson model to reanalyze associations between 2001 Toxic Release Inventory reported mercury emissions and 2000-2001 autism counts in Texas. Relative risk estimates for …

Assessing Syndromic Surveillance Of Cardiovascular Outcomes From Emergency Department Chief Complaint Data In New York City, Robert W. Mathes, Kazuhiko Ito, Thomas Matte

Publications and Research

Background Prospective syndromic surveillance of emergency department visits has been used for near-real time tracking of communicable diseases to detect outbreaks or other unexpected disease clusters. The utility of syndromic surveillance for tracking cardiovascular events, which may be influenced by environmental factors and influenza, has not been evaluated. We developed and evaluated a method for tracking cardiovascular events using emergency department free-text chief complaints. Methodology/Principal Findings There were three phases to our analysis. First we applied text processing algorithms based on sensitivity, specificity, and positive predictive value to chief complaint data reported by 11 New York City emergency departments for …

The Effect Of The Study Region On Gis Models Of Species Geographic Distributions And Estimates Of Niche Evolution; Preliminary Tests With Montane Rodents (Genus Nephelomys) In Venezuela, Ali Raza

Dissertations and Theses

Various niche-based techniques exist to model a species' potential geographic distribution in a Geographic Information Systems (GIS) framework. These models compare the environmental conditions of localities of a species' occurrence versus those of the overall study region. In addition to uses in areas such as macroecology and conservation biology, this approach has been applied recently to studies of niche evolution and historical biogeography. Definition of the study region is critical for all of these applications but has not been addressed previously. Here, I examine the effect of changes in the extent of the study region on potential distribution models of …

Egg Eviction Imposes A Recoverable Cost Of Virulence In Chicks Of A Brood Parasite, Michael G. Anderson, Csaba Moskát, Miklós Bán, Tomáš Grim, Phillip Cassey, Mark E. Hauber

Publications and Research

Background Chicks of virulent brood parasitic birds eliminate their nestmates and avoid costly competition for foster parental care. Yet, efforts to evict nest contents by the blind and naked common cuckoo Cuculus canorus hatchling are counterintuitive as both adult parasites and large older cuckoo chicks appear to be better suited to tossing the eggs and young of the foster parents. Methodology/Principal Findings Here we show experimentally that egg tossing imposed a recoverable growth cost of mass gain in common cuckoo chicks during the nestling period in nests of great reed warbler Acrocephalus arundinaceus hosts. Growth rates of skeletal traits and …

Mercury Exposure, Nutritional Deficiencies And Metabolic Disruptions May Affect Learning In Children, Renee Dufault, Roseanne Schnoll, Walter J. Lukiw, Blaise Leblanc, Charles Cornett, Lyn Patrick, David Wallinga, Steven G. Gilbert, Raquel Crider

Publications and Research

Among dietary factors, learning and behavior are influenced not only by nutrients, but also by exposure to toxic food contaminants such as mercury that can disrupt metabolic processes and alter neuronal plasticity. Neurons lacking in plasticity are a factor in neurodevelopmental disorders such as autism and mental retardation. Essential nutrients help maintain normal neuronal plasticity. Nutritional deficiencies, including deficiencies in the long chain polyunsaturated fatty acids eicosapentaenoic acid and docosahexaenoic acid, the amino acid methionine, and the trace minerals zinc and selenium, have been shown to influence neuronal function and produce defects in neuronal plasticity, as well as impact behavior …

De Novo Establishment Of Wild-Type Song Culture In The Zebra Finch, Olga Feher, Haibin Wang, Sigal Saar, Partha P. Mitra, Ofer Tchernichovski

Publications and Research

What sort of culture would evolve in an island colony of naive founders? This question cannot be studied experimentally in humans. We performed the analogous experiment using socially learned birdsong. Culture is typically viewed as consisting of traits inherited epigenetically, via social learning. However, cultural diversity has species-typical constraints1, presumably of genetic origin. A celebrated, if contentious, example is whether a universal grammar constrains syntactic diversity in human languages2. Oscine songbirds exhibit song learning and provide biologically tractable models of culture: members of a species show individual variation in song3 and geographically separated groups have local song dialects 4,5. Different …

Changing Corporate Practices To Reduce Cancer Disparities, Nicholas Freudenberg, Sandro Galea, Marianne Fahs

Publications and Research

While reducing racial/ethnic and socioeconomic disparities in cancer mortality has been identified as a national goal, current policies are unlikely to achieve it. In order to advance the development of policies for the primary prevention of cancer and cancer disparities, we propose that the practices of the tobacco, alcohol, and food industries be considered as modifiable social determinants of health. We review evidence that the practices of these industries in product design, marketing, retail distribution, and pricing contribute to cancer risk behavior, incidence, and disparities, then examine public health strategies designed to reduce health-damaging practices of these industries and encourage …

Does Economic Development Contribute To Sex Differences In Ischaemic Heart Disease Mortality? Hong Kong As A Natural Experiment Using A Case-Control Study, Mary Schooling, Tai Hing Lam, Sai Yin Ho, Kwok Hang Mak, Gabriel M. Leung

Publications and Research

Background
The male excess risk of premature ischemic heart disease (IHD) mortality may be partially due to an unknown macro-environmental influence associated with economic development. We examined whether excess male risk of IHD mortality was higher with birth in an economically developed environment.

Methods
We used multivariable logistic regression in a population-based case-control study of all adult deaths in Hong Kong Chinese in 1998 to compare sex differences in IHD mortality (1,189 deaths in men, 1,035 deaths in women and 20,842 controls) between Hong Kong residents born in economically developed Hong Kong or in contemporaneously undeveloped Guangdong province in China. …

Health Effects Of Exposure To Natural Arsenic In Groundwater And Coal In China: An Overview Of Occurrence, Guangqian Yu, Dianjun Sun, Yan Zheng

Publications and Research

Between 2001 and 2005, 21,155 of 445,638 wells in 20,517 villages in 292 counties in 16 provinces from China, or 5% of wells, were found to contain > 50 μg/L arsenic (As) by field testing with the Merck As kit. We achieved quality assurance of analysis of at least 10% of the wells containing > 50 μg/L As using hydride generation atomic fluorescence spectrometry and silver dithiodicarbomate spectrometry. Our best estimate of the population exposed to > 50 μg/L As in drinking water was 582,769. This is probably an underestimate for China because of the limited area surveyed. In a survey of 135,492 …

The Technical Fix Or The Systemic Solution For Urban Water Quality? A Case Study Of Grassroots Activism On Behalf Of New York City's Drinking Water, Mirele B. Goldsmith

Dissertations, Theses, and Capstone Projects

This case study examines the activities of the Croton Watershed Clean Water Coalition from 1996 until 2004. The Coalition opposed construction of a filtration plant for the Croton water supply. The study traces the Coalition’s campaign against filtration, which took place in the context of the widely heralded New York City Watershed Memorandum of Agreement (1997). Although the Agreement permitted New York City to avoid filtration for its Catskill and Delaware water supplies, plans were laid for filtration of the Croton supply.

My study is informed by political ecology which provides a framework for understanding politics, practices and contradictions involved …

Mapping Environmental Injustices: Pitfalls And Potential Of Geographic Information Systems In Assessing Environmental Health And Equity., Juliana Maantay

Publications and Research

Geographic Information Systems (GIS) have been used increasingly to map instances of environmental injustice, the disproportionate exposure of certain populations to environmental hazards. Some of the technical and analytic difficulties of mapping environmental injustice are outlined in this article, along with suggestions for using GIS to better assess and predict environmental health and equity. I examine 13 GIS-based environmental equity studies conducted within the past decade and use a study of noxious land use locations in the Bronx, New York, to illustrate and evaluate the differences in two common methods of determining exposure extent and the characteristics of proximate populations. …

Perceptions Of Patients Meeting The Criteria For A Diagnosis Of "Multiple Chemical Sensitivities": Exploration Of Social Situation And Need, Beth Miriam Lewis

Dissertations, Theses, and Capstone Projects

While no one explanation as to the possible nature of "multiple chemical sensitivities" has gained unanimous acceptance within the medical/science community, similar controversy does not exist with regard to the recognition of social problems generated for people suffering from this condition. In an effort to identify areas of psychosocial need requiring social work intervention, a descriptive study was carried out with a group of patients seen in an outpatient occupational health clinic. Medical charts of a deliberate sample of 423 clinic patients, seen during the period 1980-1990, were reviewed, yielding a total of 83 patients meeting criteria specific to MCS. …

Consumption, Silicosis, And The Social Construction Of Industrial Disease., D. Rosner, G. Markowitz

Publications and Research

In the wake of the bacterial revolution after Robert Koch identified the tuberculosis bacillus, medical and public health professionals classified the various forms of consumption and phthisis as a single disease--tuberculosis. In large measure, historians have adopted that perspective. While there is undoubtedly a great deal of truth in this conceptualization, we argue that it obscures almost as much as it illuminates. By collapsing the nineteenth-century terms phthisis and consumption into tuberculosis, we maintain that historians have not understood the effect of non-bacterial consumption on working-class populations who suffered from the symptoms of coughing, wasting away, and losing weight. In …

Pandora's Box Vol. 6 No. 8, York College

Pandora's Box

No abstract provided.