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Correlation Of Fluorescence Spectroscopy And Biochemical Oxygen Demand (Bod5) Using Regression Analysis, Alexander Tetteh Narteh

Theses and Dissertations

This research uses Regression analysis of fluorescence spectroscopy results to correlate with Biochemical Oxygen Demand (BOD5). Fluorescence spectroscopy was applied to samples taken from seven sample sites in the Provo and Orem waste water treatment plants found in Utah County. A total of 161 samples were collected for this research. 23 samples each were taken from four sites in the Provo waste water treatment plant namely Provo head works, aeration basin, primary filter settlement basin and the Provo effluent basin. The Orem head works, the clarifier and the Orem effluent basin were the three sample sites in the Orem waste …

Histone Deacetylase 6 (Hdac6) Is Critical For Tumor Cell Survival And Promotes The Pro-Survival Activity Of 14-3-3Ζ Viadeacetylation Of Lysines Within The14-3-3Ζ Binding Pocket, Jeffrey Benjamin Mortenson

Theses and Dissertations

Our understanding of non-histone acetylation as a means of cellular regulation is in its infancy. Using a mass spectrometry approach we identified acetylated lysine residues and monitored acetylation changes across the proteome as a consequence of metabolic stress (hypoxia). We observed changes in acetylation status of non-histone lysines in tumor cells. Through the use of small molecule inhibitors of histone deacetylase enzymes (HDACs) and siRNA screening identified HDAC6 as a pro-survival regulator of lysine acetylation during hypoxia. The phospho-binding protein 14-3-3ζ acts as a signaling hub controlling a network of interacting partners and oncogenic pathways. We show here that lysines …

Respite Care And Marital Quality In Parents Of Children With Down Syndrome, Michelle Norton

Theses and Dissertations

Parents of a child with a disability are at greater risk than other couples for having higher stress, adjustment difficulties, and lower marital quality. Respite care has been shown to reduce stress in parents of children with disabilities. This study focused on parents who have a child with Down syndrome and their reported marital quality and respite care received. One hundred and twelve couples, each consisting of a mother and a father who lived with their child with Down syndrome, completed questionnaires including the Revised Dyadic Adjustment Scale, Experience in Close Relationships Questionnaire, Daily Hassles and Uplifts Scale, and a …

Delimiting Species And Varieties Of Cycladenia Humilis (Apocynaceae), Holly Kathryn Brabazon

Theses and Dissertations

Taxonomic delimitation of rare species is vital for accurate assessments of diversity and for their conservation. Cycladenia humilis, the sole species of Cycladenia, is an enigmatic perennial widely dispersed across the western United States. Within this species there are three currently recognized varieties: C. humilis var. humilis in Northern California, C. humilis var. venusta in Southern California, and C. humilis var. jonesii in Utah and Northern Arizona. Some populations occur geographically in areas between the typical distribution of each variety and the presently accepted taxonomy inadequately addresses these populations. Using five nDNA regions, we seek to clarify relationships between current …

Dna Origami Stabilized And Seeded With 4'-Aminomethyltrioxsalen For Improved Dna Nanowire Fabrication, Matthew Paul Mcdowell

Theses and Dissertations

A fast emerging technology in the microelectronics field is bottom-up self-assembly of computer circuitry. A promising method to develop nanoelectronic devices through bottom-up self-assembly is the implementation of DNA-based technologies. Using DNA to create nanoelectronic devices is advantageous because of its already well understood base-paring and annealing qualities. These base-pairing and annealing qualities can be used to design and construct DNA nanostructures called DNA origami. DNA origami are specially designed structures made from single stranded DNA. Short single stranded DNA oligonucleotides called staple strands attach to a large single stranded DNA called a DNA scaffold. DNA staple strands and DNA …

Progress Towards The Total Synthesis Of Yaku'amide A, Zhiwei Ma

Theses and Dissertations

The synthetic progress towards yaku'amide A is described. The study leads to development of new synthetic methodologies. Base-free regioselective aminohydroxylation is convenient to deliver β-tert-hydroxyamino acids. A sequence consisting of alkylative esterification, Martin sulfurane mediated anti dehydration, a tandem azide reduction-O→N acyl transfer allows the rapid access of E- and Z-dehydroisoleucine-containing peptides from β-tert-hydroxyisoleucine derivatives. Those methods are effective in constructing complicated peptides and advanced subunits of yaku'amide A.

The Infectious Monster: Borders And Contagion In Yeti And Lágrimas En La Lluvia, Kiersty Lemon

Theses and Dissertations

Monsters are disruptive characters, who cross boundaries and blend categories. They come in various kinds: Non-human monsters, such as Dracula, created-by-human monsters like Frankenstein, human monsters like Hitler, and more-than-human monsters such as the X-men. These monsters can either be dangerous or helpful to humanity. Dangerous monsters appear as infectious, viral forces, while helpful monsters are inoculative forces for positive change. In either case, they penetrate the borders set up between normatively separate categories. Critics and authors have long realized the connection between heroes and monsters, often portraying them as necessary to one another, as two sides of a single …

Participation In Sports And The Development Of Resilience In Adolescents, Jason Johnson

Theses and Dissertations

Adolescents today are faced with an array of risk factors including sexual activity and drug and alcohol use, as well as environmental factors that are beyond their control, such as parental divorce and poverty. The attribute of resilience is an extremely desirable quality that, if developed, has the capacity to reduce the effect of many of these risk factors that many adolescents are exposed to. Sport participation is a potential intervention that a large portion of adolescents can have access to through school and community programs that could potentially foster resilience. The current causal-comparative, non-experimental study sought to add to …

Terminological Mediation In Information Technology And Related Fields, Jessica Smith Richards

Theses and Dissertations

Terminological dissonance is created by the inherent ambiguity of natural language and compounded by ontological specialization efforts within fields. Terminological dissonance creates high-risk miscommunications in two key areas: within Information Technology as a singular domain, and also between IT and other fields in interdisciplinary projects. A comprehensive literature review revealed a lack of previous effort to acknowledge or solve problems of terminological dissonance within Information Technology. This research provides a comprehensive overview and definition of the terminology mediation space as it relates to Information Technology and adjacent fields. An analysis and verification of the contents and implementation of the terminology …

Maoa Genotype X Environment Interaction And Influence On Monoamine Neurotransmitter Functioning In Rhesus Macaques (Macaca Mulatta), Daniel Loveland, Dr. J. Dee Higley

Journal of Undergraduate Research

Original Project Title: Why can’t we all just get along? MAOa genotype variation is associated with aggressive temperaments in nonhuman primates

In place of studying behavior differences among rhesus monkeys with differing MAOa genotypes, my research group and I chose to analyze the effects of genes and the environment on brain chemistry.

The Effects Of Trilostane And Dheas On Dopamine Release In The Nucleus Accumbens, Tyler Okelberry, Dr. Scott Steffensen

Journal of Undergraduate Research

Alcohol dependency is a serious, widespread problem in the United States. The Substance Abuse and Mental Health Services Administration reported that “In 2009, the number of persons aged 12 or older needing treatment for an alcohol use problem was 19.3 million (7.7 percent of the population aged 12 or older).” ¹ The following study contributed to a growing body of research about alcohol addiction and the brain. The study focused on a part of the brain called the nucleus accumbens. The release of the neurotransmitter dopamine in the nucleus accumbens has been implicated in the mental processes of reward and …

Inferring Pathway Dysregulation In Cancers From Multiple Types Of Omic Data, Shelley M. Macneil, William E. Johnson, Dean Y. Li, Stephen R. Piccolo, Andrea H. Bild

Faculty Publications

Although in some cases individual genomic aberrations may drive disease development in isolation, a complex interplay among multiple aberrations is common. Accordingly, we developed Gene Set Omic Analysis (GSOA), a bioinformatics tool that can evaluate multiple types and combinations of omic data at the pathway level. GSOA uses machine learning to identify dysregulated pathways and improves upon other methods because of its ability to decipher complex, multigene patterns. We compare GSOA to alternative methods and demonstrate its ability to identify pathways known to play a role in various cancer phenotypes. Software implementing the GSOA method is freely available from https://bitbucket.org/srp33/gsoa …

Discovery And Confirmation Of Novel Serum Biomarkers Diagnosing Alzheimer’S Disease, Tyler Mower, Dr. John Kauwe

Journal of Undergraduate Research

Background: Alzheimer’s disease (AD) remains challenging to diagnose, especially early disease. Useful serum AD biomarkers would be of great utility in clinical settings and in drug development efforts. We used a novel serum proteomic approach to interrogate the lowmolecular- weight proteome for AD biomarkers.

Experimental design: A discovery study used sera from 58 any-stage AD cases and 55 controls analyzed by capillary liquid chromatography-tandem mass spectrometry. Promising biomarkers were retested in a second, blinded confirmatory study (AD cases=68, controls=57). Several biomarkers replicated and multi-marker sets were modeled.

Results: The initial study found 59 potential AD biomarkers. Thirteen recurred in more …

Vibrio Cholera: Detection And Destruction, Amber Brown, Dr. Julianne Grose

Journal of Undergraduate Research

Cholera, the Disease: Cholera is a disease that affects three to five million people each year with approximately 100,000 deaths. Transmitted mainly by the drinking-­‐water supply, it causes an infection in the small intestine leading to severe diarrhea and vomiting. If left untreated, it can cause death within hours. The disease is caused by the bacterium Vibrio cholerae which was first isolated by Filippo Pacini in 1854. Vibrio cholerae is gram negative, comma shaped, and flagellated. It is easily treated with modern water purification techniques, and as such it is most prevalent in developing countries that lack this infrastructure. Countries …

Iron As A Biomarker For Alzheimer’S Disease, Samual Barlow, Dr. Jonathan Wisco

Journal of Undergraduate Research

Alzheimer’s Disease (AD) is one of the highest causes of death in the United States. After the age of 65, the chance of getting Alzheimer’s doubles every five years. As the average lifespan of Americans increases, the importance of understanding AD and finding more efficient ways to treat it increases as well. The earlier AD is treated, the more effectively we are able to treat it. Non-heme iron (Fe) has been shown to spatially correlate with Abeta. Since Fe causes a signal dropout in susceptibility-weighted Magnetic Resonance Imaging (MRI), this imaging modality could possibly be used as a way to …

Entomophilic Nematode Diversity And Distribution In Beaver Dam Wash Area, Westen Achibald, Dr. Byron Adams

Journal of Undergraduate Research

The Beaver Dam Wash National Conservation Area is considered an important biodiversity hotspot for the Western United States. The wash is an ecotone on the Northeastern edge of the Mojave Desert and is directly adjacent to both the Colorado Plateau and the Great Basin. Thus, this area contains various species of flora and fauna from each of the surrounding biomes. Prior research of the Beaver Dam Wash has documented high aboveground biodiversity for a desert ecosystem however no research has been conducted on belowground diversity. For this reason we chose to characterize the diversity and distribution of entomophilic nematodes, as …

Importance Of Rare Genetic Variants In Alzheimer’S Disease (Ttc3), Devan Bursey, Dr. John S. K. Kauwe

Journal of Undergraduate Research

Alzheimer’s is a neurodegenerative disease caused by the formation of amyloid plaques and neurofibrillary tangles. Most current research on Alzheimer’s disease has focused on using genome-wide association studies to identify common genetic variants however; past research has shown that rare genetic variants play an important role in the development of Alzheimer’s disease. For example, studies have shown that rare genetic variants in APP, PSEN1, and PSEN2 drastically increase an individual’s risk for Alzheimer’s disease (Tanzi). My research focused on specific rare genetic variant in the TTC3 gene (S1966X). This rare variant has a point mutation that causes a premature stop …

Biofilm Binding Capabilities Of Yersinia Pseudotuberculosis Mutants, Bailey Benson, Dr. David Erickson

Journal of Undergraduate Research

Yersinia pestis — the causative agent of the deadly bubonic plague, which killed over one-third of Europe in the 14th century – spreads quickly from person to person due to its ability to create a biofilm, characterized by bacterial adhesion to themselves and surfaces. The bacteria infects fleas and forms a biofilm in their midgut, which causes the flea to both feed more often and cough up bacteria biofim into each new host. In this way, the formation of a strong biofilm is essential for the rapid spread of the bubonic plague. In my experiment, I analyzed which genes would …

Replication Of Gene-Gene Interactions In Large Alzheimer Disease Dataset, Kevin Boehme, Dr. John "Keoni" Kauwe

Journal of Undergraduate Research

Alzheimer’s disease (AD) is a common and complex neurodegenerative disease. It is the most common cause of dementia and is characterized by the accumulation of amyloid plaques and neurofibrillary tangles. To date, many genetic loci have been found that modify AD risk, but collectively, they explain only a fraction of the heritability of the disease. It is hypothesized that rare variants with large effects as well as epistatic interactions account for much of the unexplained heritability in AD.

The Emerald Ash Borer: Beautifully Deadly, Preston Arnold, Dr. S. M. Bybee, Dr. N. P. Lord

Journal of Undergraduate Research

The Jewel Beetles (Coleoptera: Buprestidae) contain ~15,000 of the most stunning yet least understood species in the animal kingdom (Fig. 1; Bellamy and Nelson, 2002). Although it is the 8th largest beetle family and contains many species of biological interest and economic importance, the family is poorly studied. To date, only one molecular phylogeny has been published for the family, and the six subfamilial classifications are still in flux (Evans et al. 2014). Of particular interest within the family Buprestidae is the Emerald Ash Borer; (EAB; Agrilus planipennis) a destructive pest of great economic importance (Fairmare). The EAB was …

Understanding The Role Of Estrogen In The Mucosal Immune Response, Youna Choi, Dr. Eric Wilson

Journal of Undergraduate Research

Most antigens (foreign substances) enter an organism via mucosal surfaces. Thus, understanding the mechanisms involved in immune protection at these surfaces is of paramount importance. Immune responses are highly dependent on homing mechanisms responsible for directing lymphocyte (white blood cell) migration and accumulation at target tissues. Estrogen control of lymphocyte homing within the uterus has recently been established (2).

Anatomical Variation Of The Porcine Recurrent Laryngeal Nerve, Marc Christensen, Dr. Jonathan Wisco

Journal of Undergraduate Research

Selective reinnervation of the posterior cricoarytenoid muscle (PCA), accomplished by anastomosis of a transected recurrent laryngeal nerve (RLN) with the phrenic nerve, is the best treatment for vocal cord paralysis and RLN compromise. However, anatomical variation of the RLN in human patients contributes to the likelihood of post-operative complications such as laryngeal synkinesis. The purpose of this study, Anatomical Variation of the Porcine Recurrent Laryngeal Nerve, is to establish a clear and detailed understanding of RLN branching patterns in pigs, the animal model most similar to humans in regards to laryngeal anatomy, to determine nerve branches that are best …

Environmental And Adaptive Buffers That Mediate The Response Of Subalpine Ecosystems To Environmental Change, Lafe G. Conner

Student Works

This document reports the results of 4 studies of subalpine ecosystem ecology, describing ways that spatial heterogeneity in soils and plant communities mediate ecosystem responses to environmental change. Ecosystem responses to environmental change are also mediated by regional climate patterns and interannual variability in weather. In the first chapter we report the results of an experiment to test for the mediating effects of associational resistance in a forest community that experienced wide-spread beetle kill. We found that Engelmann spruce were more likely to survive a beetle outbreak when growing in low densities (host dilution) and not through other types of …

High Salinity Stabilizes Bacterial Community Composition And Activity Through Time, Tylan Wayne Magnusson

Theses and Dissertations

Dormancy is a plausible strategy for bacteria to overcome the effects of temporal fluctuations in resources or stresses and await more “optimal” conditions to resume metabolic activity and growth. Seasonal changes in environmental conditions force microbes to adjust their metabolic activity accordingly, and community composition drastically shifts. In extreme environments, however, the overriding effects of a constant stress may constrain the need or benefit of bacteria entering dormancy. In hypersaline lakes, high metabolic activity is required to maintain adaptations that permit survival. Sampling from six lakes on a salinity gradient (0.05% – 30.3%), we measured seasonal fluctuations in bacterial dormancy …

Exploring Intensive Longitudinal Measures Of Student Engagement In Blended Learning, Charles R. Graham

Faculty Publications

In this exploratory study we used an intensive longitudinal approach to measure student engagement in a blended educational technology course, collecting both self-report and observational data. The self-report measure included a simple survey of Likert-scale and open-ended questions given repeatedly during the semester. Observational data were student activity data extracted from the learning management system. We explored how engagement varied over time, both at the course level and between students, to identify patterns and influences of student engagement in a blended course. We found that clarity of instruction and relevance of activities influenced student satisfaction more than the medium of …

The Amaranth (Amaranthus Hypochondriacus) Genome: Genome, Transcriptome And Physical Map Assembly, Jared William Clouse

Student Works

Amaranthus hypochondriacus is an emerging pseudo-cereal native to the New World which has garnered increased attention in recent years due to its nutritional quality, in particular its seed protein, and more specifically its high levels of the essential amino acid lysine. It belongs to the Amaranthaceae family, is an ancient paleotetraploid that shows amphidiploid inheritance (2n=32), and has an estimated genome size of 466 Mb. Here we present a high-quality draft genome sequence of the grain amaranth A. hypochondriacus. The genome assembly consisted of 377 Mb in 3,518 scaffolds with an N50 of 371 kb. Repetitive element analysis predicted that …

The Amaranth (Amaranthus Hypochondriacus) Genome: Genome, Transcriptome And Physical Map Assembly, Jared William Clouse

Theses and Dissertations

Amaranthus hypochondriacus is an emerging pseudo-cereal native to the New World which has garnered increased attention in recent years due to its nutritional quality, in particular its seed protein, and more specifically its high levels of the essential amino acid lysine. It belongs to the Amaranthaceae family, is an ancient paleotetraploid that shows amphidiploid inheritance (2n=32), and has an estimated genome size of 466 Mb. Here we present a high-quality draft genome sequence of the grain amaranth A. hypochondriacus. The genome assembly consisted of 377 Mb in 3,518 scaffolds with an N50 of 371 kb. Repetitive element analysis predicted that …

Differential Receptors For Advanced Glycation End-Products (Rage) Expression In Preeclampsia, Intrauterine Growth Restriction And Gestational Diabetes, Kristen Lena Alexander

Theses and Dissertations

Preeclampsia (PE), intrauterine growth restriction (IUGR) and gestational diabetes (GDM) increase the risk of maternal and fetal morbidity and mortality. The roles of Advanced Glycation End-products (AGEs) are already well documented concerning inflammation, hypoxia and oxidative stress. AGEs bind to its receptor, Receptor for Advanced Glycation End-products (RAGE), and activate an inflammatory pathway. This pathway alters the efficacy of invasive trophoblast cells and in the placenta and can result in placental dysfunction. We hypothesized that the placental dysfunction found in PE, IUGR, and GDM resulted from an over activation of the RAGE-mediated inflammatory pathway. Using human placental samples, we found …

Adolescents' Perceptions Of Homophobic Language: Implications For Bullying Prevention, Benjamin M. Bailey

Theses and Dissertations

Large scientific studies have recognized homophobic language as a national concern (American Association of University Women [AAUW], 2001; Kosciw, Greytak, Diaz, & Bartkiewicz, 2010). Concerning perceptions of homophobic language use, quantitative studies were mostly conducted in specific areas of the United States and qualitative studies have largely approached the issue with the theory of masculinity. The current study proposed to approach the study actively challenging all assumptions about homophobic language use. This study assimilated 20 adolescents' perceptions of homophobic language, using a hermeneutic qualitative methodology. This study found that in addition to policing masculinity, homophobic language was used to police …

The Effects Of Inhibiting Wnt Secretion And Activity On Cranial And Neural Development, Julie Louise Hulet

Theses and Dissertations

Wnt signaling has been shown to have several roles in the development of sensory neurons, particularly in the ophthalmic portion of the trigeminal nerve. Many of these studies have relied on the conclusion that Wnt is necessary but not sufficient for the induction and maintenance of the neural precursor cells that develop in the ophthalmic placode. Wnt had been inhibited in the ophthalmic placode using a dominant negative t-cell factor (TCF) and resulted in the loss of Pax3 expression (indicative of undifferentiated placode cells) in all targeted cells, suggesting a loss of specification/commitment of these cells to the sensory neuron …