Digital Commons Network^™

Role Of The Viral Lana Protein In Human Cancers Caused By Kaposi’S Sarcoma-Associated Herpesvirus, Gregory Low, Brad Berges

Journal of Undergraduate Research

The purpose of our experiment was to ascertain the importance of the LANA protein encoded by the Kaposi’s Sarcoma-Associated Herpesvirus (KSHV). LANA is believed to be essential for the survival of KSHV in human cells. KSHV causes a variety of cancers including Kaposi’s sarcoma (KS), multicentric Castleman’s disease (MCD), and primary effusion lymphoma (PEL). These cancers most often appear in the immunocompromised and can be fatal. The mortality rate of PEL is ~60% after one year, KS 5-year mortality rate is ~30%, and MCD 5-year mortality rate is 35%. No known vaccine or anti-viral drug treatment is currently licensed for …

The Use Of Bacteriophage For Surface Sterilization Of Methicillin-Resistant Staphylococcus Aureus In Poultry Facilities, Trevor Wienclaw, Bradford Berges

Journal of Undergraduate Research

Staphylococcus aureus (SA) is potentially dangerous pathogen that can infect humans and animals alike¹. The primary treatment for such infections has been antibiotics, but even shortly after antibiotics began to be used, antibiotic-resistant strains, known as MRSA, were discovered. These resistant strains have since spread, and now account for over half of all clinical isolates⁴. A similar scenario developed in the livestock industry. Antibiotics have been used to treat diseased animals and to promote growth in healthy animals. This use lead to development of MRSA among these animals. These animals may merely be carriers or they …

Isolation And Characterization Of Novel Lytic Phage To Treat Mrsa, Tyler White, Bradford Berges

Journal of Undergraduate Research

The bacterium Staphylococcus Aureus is the cause of a serious skin disease that is known to cause life-threatening infections such as pneumonia, endocarditis, meningitis, sepsis, bacteremia, and toxic shock syndrome [1]. Nonetheless, most SA infections are readily remedied via antibiotic treatment with methicillin. However, over the course of frequent exposure to various antibiotics, the bacteria have evolved a mutant strain (MRSA) that is completely resistant to the drug. In 2005 an estimated 11,000 deaths occurred that can be attributed to SA, with the majority caused by MRSA isolates [2]. Albeit the mutant is named MRSA, isolates of this strain are …

Finding Clues To Phosphate Homeostasis Through Transposon Sequencing, Tanner Dean, William Mccleary

Journal of Undergraduate Research

Though Escherichia Coli is a thoroughly investigated species of bacteria, questions still remain concerning genes involved in phosphate homeostasis. Phosphate homeostasis is the idea that a cell or bacterium adapts to changing environmental phosphate concentrations. Cells need to adapt to changing phosphate conditions because phosphate is essential to the biochemistry of many cellular processes. A cell therefore, must be able to collect and store phosphate when there is excess or scavenge and utilize stored phosphate in times when there are low levels of extracellular phosphate available. This process is not entirely understood in E.coli or other single celled organisms. A …

Novel G-Protein Coupled Receptor Expression And Modulation Of Synaptic Plasticity, Michael Thayer Christensen, Dr. Jeff Edwards

Journal of Undergraduate Research

According to the Centers for Disease Control and Prevention, Alzheimer’s disease – infamously known for its patients’ loss of memory and other intellectual abilities – is the sixth most common cause of death in the United States. Sadly this is just one of many ailments people experience that result in learning and memory loss. Why do so many suffer from these neurodegenerative states? One fundamental problem is that the complex learning and remembering process is not well understood. A specific brain region called the hippocampus is involved in short-term declarative memory; however, many of its intricate signaling pathways that mediate …

Confirming The Spatial Relationship Between Iron, Tau Protein, And Amyloid Beta Within The Subiculum As A Means To Better Detect Alzheimer’S Disease With Magnetic Resonance Imaging, Brandon Herrington, Jonathan Wisco

Journal of Undergraduate Research

As the 6^th leading cause of death in the United States¹, and because of the significant deterioration it causes in the quality of life of its victims, Alzheimer’s disease is an area where research to improve its early diagnosis is paramount to establishing new treatments. Alzheimer’s disease appears to show its effects at a particularly early stage within the hippocampus². More specifically, the subicular area of the hippocampus is noted as a region that is subjected to more severe pathological changes due to the disease³. Braak staging is a method used to classify, …

The Effect Of Gut Microbiota On Starvation Resistance In D. Melanogaster, Alec Judd, John Chaston

Journal of Undergraduate Research

It has already been established that gut microbiota affect starvation resistance, fat (TAG) content, and development in D. melanogaster. Previous studies in this lab have suggested that effects of the microbiome on these traits are correlated, but this prediction has not been explicitly tested. We are specifically interested in identifying individual bacterial genes that may mediate microbial effects on all three host traits. One way to identify genes with causal influence on animal traits is MGWA (Meta Genome-Wide Association). To this end we have measured starvation resistance in D. melanogaster individually associated with a panel of 43 bacterial strains, and …

Learning Chemistry Through Experimentation, Kyle Long, Jennifer Nielson

Journal of Undergraduate Research

For the past five years, Dr. Jennifer Nielson has conducted research in Kampala, Uganda, located in south-central Africa. I have been able to join her for two of the five years, including this past year for nearly three weeks in August. Our research focuses on teaching basic chemistry principle that are difficult to comprehend by using experiments that demonstrate the general concept of atomic structures and functions.

Marital Satisfaction, Error-Observation, And The Brain: Harmful Or Beneficial Effects Of Spouse Observation?, Chelsea Romney, Michael Larson

Journal of Undergraduate Research

Romney, Chelsea Marital Satisfaction, Error-observation, and the Brain: Harmful or Beneficial Effects of Spouse Observation? Faculty Mentor: Larson, Michael, Department of Psychology and Neuroscience Introduction Rewarding marital relationships are associated with many positive outcomes in one’s physical and mental health (Robles, & Kiecolt-Glaser, 2003). These benefits include improved cardiovascular functioning (Kiecolt-Glaser, & Newton, 2001), decreased depression risk (Robins & Reiger, 1991), higher self-reported levels of happiness (Proulx & Snyder-Rivas, 2013), and overall lower rates of mortality (Manzoli, Villari, Pirone & Boccia, 2007). Furthermore, positive health outcomes are not only due to marital status, but also to the quality of one’s …

Marital Satisfaction, Error-Observation, And The Brain: Harmful Or Beneficial Effects Of Spouse Observation?, Chelsea Romney, Michael Larson

Journal of Undergraduate Research

Romney, Chelsea Marital Satisfaction, Error-observation, and the Brain: Harmful or Beneficial Effects of Spouse Observation? Faculty Mentor: Larson, Michael, Department of Psychology and Neuroscience Introduction Rewarding marital relationships are associated with many positive outcomes in one’s physical and mental health (Robles, & Kiecolt-Glaser, 2003). These benefits include improved cardiovascular functioning (Kiecolt-Glaser, & Newton, 2001), decreased depression risk (Robins & Reiger, 1991), higher self-reported levels of happiness (Proulx & Snyder-Rivas, 2013), and overall lower rates of mortality (Manzoli, Villari, Pirone & Boccia, 2007). Furthermore, positive health outcomes are not only due to marital status, but also to the quality of one’s …

Presenilin E318g Variant And Alzheimer’S Disease Risk: The Cache Country Study, Ariel Hippen, John Kauwe

Journal of Undergraduate Research

Alzheimer’s disease is the leading cause of dementia in the elderly and the third most common cause of death in the United States. A vast number of genes regulate Alzheimer’s disease, including Presenilin 1 (PSEN1). It is possible that novel variants in the PSEN1 gene have an effect on Alzheimer’s disease status. A recent study suggested that one of these variants, PSEN1 E318G, significantly affects Alzheimer’s disease status in a large case-control dataset, particularly in connection with the APOEε4 allele [1].

Sensory Integration In Zebrafish Larvae, Hannah Waddel, Dr. Arminda Suli

Journal of Undergraduate Research

A major task of the central nervous system is to make sense of the environment and mount an appropriate reaction. The ability to organize and integrate inputs from different sensory systems is critical for survival in animals. Sensory integration dysfunction is implicated in human disorders such as autism and dyslexia. Swimming behaviors such as rheotaxis, defined as swimming against a current, require the integration of different sensory systems such as mechanosensory hair cells, the visual system, and the vestibular system. In this project, we attempted to create an assay to measure the rheotaxis behavior of Danio rerio (zebrafish) larvae, in …

Software Package For Mass Spectrometry Isotope Analysis And Extraction, Michael Porter, Dr. John Price

Journal of Undergraduate Research

Proteins are involved in nearly every cellular process. They transport molecules, replicate DNA, catalyze reactions, respond to stimuli, and form the structural framework of the cell. The diversity of protein function has led to an interest in understanding the cellular production and control of individual proteins which in turn is key to understanding how the cell responds to the environment and what occurs on a molecular level during disease.

The Role Of Subtelomeric Silencing In Aging, Mark Roth, Jonathan Alder, Phd

Journal of Undergraduate Research

Telomeres, located at the ends of chromosomes, are repetitive DNA sequences composed of TTAGGG repeated thousands of times. Each time a cell copies its DNA a small amount of telomeric DNA is lost due to the end replication problem. Because of this, telomeres are eventually lost. New telomeres are synthesized by telomerase. Telomerase has both a protein reverse transcriptase component (TERT) and an RNA template (TERC) that it uses to synthesize new telomeres; however, expression is tightly controlled and is not expressed in most cells in our bodies. This limits the number of times that most of our cells can …

Solving The Structure Of The Raptor-Cct Complex, Grant Ludlam, Barry Willardson

Journal of Undergraduate Research

The protein Raptor is an essential component of the mechanistic target of rapamycin (mTOR) cell signaling complex 1 (mTORC1) (1). The mTORC1 complex is a master regulator of cell growth, making it a high-priority target in cancer and inflammation research (2). Before Raptor can be assembled into the mTORC1, it is first folded by the chaperone protein cytosolic chaperonin containing TCP1 (CCT). CCT is composed of two rings of 8 different subunits, which together form a barrel shape. CCT substrates are folded in the 85 Å wide folding cavity inside the barrel.

Exercising To Stay Mentally Fit, Tyler Hammond, Dr. Jerffrey Edwards

Journal of Undergraduate Research

Both exercise and stress have an impact on learning and memory. Exercise appears to have positive effects on learning and memory while stress appears to have negative effects on learning and memory. Previous work in our lab has demonstrated that exercise enhances long-term potentiation mediated by electrical stimulus in the hippocampus and that stress decreases long-term potentiation mediated by electrical stimulus in the hippocampus. Long-term potentiation is a measure of the strengthening of the synapses following an electrical stimulus intended to model learning and memory. The hippocampus is the area of the brain commonly deemed responsible for long-term declarative memories.

How Users Perceive And Respond To Security Messages: A Neurois Research Agenda And Empirical Study, Bonnie Anderson, Anthony Vance, C. Brock Kirwan, David Eargle, Jeffrey Jenkins

Faculty Publications

Users are vital to the information security of organizations. In spite of technical safeguards, users make many critical security decisions. An example is users' responses to security messages—discrete communication designed to persuade users to either impair or improve their security status. Research shows that although users are highly susceptible to malicious messages (e.g., phishing attacks), they are highly resistant to protective messages such as security warnings. Research is therefore needed to better understand how users perceive and respond to security messages. In this article, we argue for the potential of NeuroIS—cognitive neuroscience applied to information system (IS)—to shed new light …

Accepting Evolution And Believing In God: How Religious Persons Perceive The Theory Of Evolution, Katherine F. Manwaring

Theses and Dissertations

Students frequently hold an incorrect view of evolution. There are several potential barriers that prevent students from engaging evolutionary theory including lack of knowledge, limited scientific reasoning ability, and religiosity. Our research provides tools for overcoming barriers related to religiosity and diagnoses the barriers preventing students from fully engaging in learning the theory of evolution. This was a two-part study. The first part of our study addressed two hypothesized barriers to learning evolutionary theory among members of The Church of Jesus Christ of Latter-day Saints (LDS or Mormon): (1) religious views stemming from incorrect understanding of the Church's neutral stance …

A Model Of Children's Acquisition Of Grammatical Word Categories From Adult Language Input Using An Adaption And Selection Algorithm, Emily Marie Berardi

Theses and Dissertations

Previous models of language acquisition have had partial success describing the processes that children use to acquire knowledge of the grammatical categories of their native language. The present study used a computer model based on the evolutionary principles of adaptation and selection to gain further insight into children's acquisition of grammatical categories. Transcribed language samples of eight parents or caregivers each conversing with their own child served as the input corpora for the model. The model was tested on each child's language corpus three times: two fixed mutation rates as well as a progressively decreasing mutation rate, which allowed less …

Addressing Parental Vaccination Questions In The School Setting: An Integrative Literature Review, Karlen E. Luthy, Jana L. Burningham, Lacey M. Eden, Janelle L B Macintosh, Renea L. Beckstrand

Student Works

School nurses work in a unique environment with key opportunities to address parental

concerns and questions regarding their child’s health. A common concern for parents during school enrollment is childhood vaccination safety and efficacy. As public health leaders, school nurses are well respected among parents, therefore school nurses are in a prime position to educate parents and promote childhood vaccinations while also dispelling common vaccination myths. The purpose of this integrative literature review is to synthesize evidence-based answers to common parental questions regarding childhood vaccinations.

Full Issue, Studia Antiqua

Studia Antiqua

No abstract provided.

Perception As Reality: The Intersection Of Genre And Ethnic Identity In Classical History, Dustin Simmons

Studia Antiqua

No abstract provided.

Creation Of An Eight-Member Plasmid Library For Promoter Swapping To Control Chromosomal Gene Expression In E. Coli, Matt Phillips, Dr. William Mccleary

Journal of Undergraduate Research

The ability to control gene expression in bacteria has been essential in solving problems in many fields, including medicine and environmental protection. Recent advances in genomic and metabolic modeling tools have led to the development of a new technique called promoter swapping which enables researchers to “swap” any native gene promoter with one that has been specifically engineered. Promoter swapping uses viral recombination proteins to swap DNA in the chromosome rather than in plasmids, allowing for constant and permanent expression levels. Our goal was to create eight template plasmids with promoters of increasing strengths to be used in promoter swapping. …

Microbial Pretreatment Of Waste For Anaerobic Digestion, Braden Myers, Jaron Hansen

Journal of Undergraduate Research

The aim of this research was to demonstrate Caldicellulosiruptor bescii is a feasible microbial pretreatment of lignocellulose for enhanced production of biogas when coupled with secondary anaerobic digestion. Before anaerobic digestion of waste can reach its maximum energy production potential, economically sound methods for pretreatments that allow increased digestion of waste materials must be developed. Many types of waste cannot be broken down sufficiently by anaerobic digestion alone. Overcoming this hurdle through successful feedstock pretreatment would unlock a vast potential supply of renewable energy feedstock materials.

Mexican American Families, Nicole Rose, Dr. Greg Thompson

Journal of Undergraduate Research

Researchers define familismo as a “strong identification with the family” (Triandis, Marin, Betancourt, Lisansky, & Chang, 1982). Sabogal et al. said that “perceived support from family,” “family obligations,” and third, using family as cultural “referents” are important parts of familismo(Sabogal, Marín, Otero-Sabogal, Marín, & Perez-Stable, 1987). All researchers seem to have an underlying assumption that familismo-style relationships are phenomena that occur between blood-relation (Sabogal et al., 1987)(Steidel & Contreras, 2003)(Triandis et al., 1982)(Davila, Reifsnider, & Pecina, 2011). I argue that Mexican kinship is not defined simply by blood relations and that a kin group can be formed through reciprocal relationships. …

Infant Aggression In Rhesus Macaques, Stephen Anderson, Dr. James Higley

Journal of Undergraduate Research

Temperament is defined as a pattern of behaviors that remain stable and show continuity over time and across different contexts (Clarke & Boinski, 1995). These behavioral patterns can be observed early in life, and can serve as a predictor of future behaviors (Weinstein & Capitanio, 2008). Temperamental differences are largely a result of interaction effects between genetic and environmental factors. These interactions can be complex, and there is a great need to better understand the nature of those interactions (Clarke & Boinski, 1995). The purpose of this project (which is still ongoing) is to better understand the features of early …

Depression, Suicide, And Performance Monitoring: Identifying Neuroelectric Markers Of Suicidal Behavior, Kaylie Carbine, Michael Larson

Journal of Undergraduate Research

From 2000-2009, suicide mortality rates increased by 15% (Rockett, et al., 2012) and 98% of individuals who complete suicide have diagnosable psychopathology (Bertolote, Fleischmann, De Leo, & Wasserman, 2003). Individuals at risk for suicide exhibit cognitive impairments in decision-making and problem-solving abilities (Pollock & Williams, 2004; Jollant, et al., 2005). These cognitive deficits may be related to deficits in performance monitoring. Performance monitoring is the ability to continually assess behavior in order to make adjustments and improve performance. Performance monitoring is mediated by the anterior cingulate cortex (ACC), which is related to cognitive control abilities. Furthermore, suicidal thoughts and behaviors …

Understanding The Interaction Between Ulk1 And Atg9 And Autophagy, Ryan Hyatt, Joshua L. Andersen

Journal of Undergraduate Research

Autophagy is an adaptive catabolic process of self-digestion, a process by which the cell recycles aged organelles and other structures. Interestingly, changes in the regulation of autophagy have been linked to infections, cancers, neurodegeneration, aging, and heart disease (Arroyo, Daniela S. et al. 2014). Understanding the mechanisms which control autophagy will aid in better treatment of those diseases, specifically in the development of effective pharmaceuticals.

The Mechanism Of Homogeneous Hg-Catalyzed Methane Partial Oxidation, Steven Butler, Daniel Ess

Journal of Undergraduate Research

There is now access to vast amounts of inexpensive natural gas, due in part to shale gas discoveries. Abundant natural gas provides significant motivation to develop methods for methane partial oxidation. One major target for methane oxidation is methanol. Natural gas is principally methane, but also includes significant amounts of ethane and propane. Methanol can be produced from natural gas via high-temperature generation of syngas (mixture of H2 and CO).

Plant Microfossils Recovered From Dental Calculus At Casas Grandes, Mexico, Daniel King, Michael T. Searcy, Kyle Waller

Faculty Publications

Microfossil analysis is a technique used to better understand prehistoric diets. As part of a larger multinational project, we gathered and analyzed 112 samples of dental calculus (fossilized plaque) from human remains discovered at Paquimé and other sites in the Casas Grandes river valley to identify various microfossils still present in the silica matrix. With this information, we are able to better understand the flora present during ancient times and how it was used (food, processing, etc.).