Digital Commons Network^™

Research Report: High Tunnel Tomato Fruit Cluster Pruning, Caterina Roman, Rebecca G. Sideman

Faculty Publications

Tomatoes are a high value crop grown worldwide. Indeterminate varieties are commonly grown in high tunnel structures throughout New England for the fresh market. Indeterminate tomato plants often suffer from a phenomenon called ‘June drop’ in which the plant’s first four to five cluster of fruit set perfectly but the subsequent two to three clusters have poor set and plant productivity drops suddenly. While cluster thinning (e.g., reducing the number of fruit allowed to mature per cluster) has been successfully shown to increase fruit size, it has generally not increased marketable yield. We hypothesized that reducing the fruit load by …

Potato Processing In The Home: Sustainability And Nutritional Impacts, Aubin Payne

Biological and Agricultural Engineering Undergraduate Honors Theses

Potatoes are the world's fourth most consumed crop. Their versatility and long shelf-life make them a staple food for millions of people worldwide. Still, the increasing consumption of highly processed potato products in developed countries has damaged the public's appreciation of potatoes as a valuable source of essential nutrients. Additionally, as public awareness of environmental sustainability increases, the average consumer is more likely to value processing methods that mitigate environmental damage.

Researchers simulated several home storage and processing conditions to find out how nutrition and environmental impact are affected by the home processing timeline. Then, a nutrient analysis, life cycle …

Pestfacts Wa Issue 03 - May 2022, Svetlana Micic, Dustin Severtson, Jean Galloway, Cindy L. Webster

PestFacts WA

PestFacts WA Issue 03 - May 2022 contents:

• Seeing chewing damage in sprayed canola crops but can’t find the culprit?
• Mites and lucerne flea are active
• Slaters
• Meet PestFacts WA team member – Svetlana Micic
• Field pea blackspot forecasts for WA are available online
• PestFacts WA podcast

A Small Stem Assay For Chestnut Blight Resistance In Hybrid American Chestnut Trees, Evelyn Odle

Honors Theses

Cryphonectria parasitica (Murr.) Barr is the causal agent for the chestnut blight disease, which was brought to North America in the late 19th century on nursery stock from Japan (Anagnostakis 1987). A pandemic of chestnut blight lasted for the next half century, nearly wiping out all American chestnut trees (Castanea dentata Borkh.). Restoration works to restoring the American chestnut to its native range in North America’s canopy has been going on for the past century. The American Chestnut Foundation has strived to breed a resistant American chestnut by backcross breeding with Chinese species (C. mollissima Blume) since the 1980s. The …

Through The Leaves: Understanding Population Genetic Structure Of Clematis Morefieldii, Keith Andrew Greenway

Honors Capstone Projects and Theses

No abstract provided.

Winners And Losers In Dryland Reforestation: Species Survival, Growth, And Recruitment Along A 33-Year Planting Chronosequence, Clifton Albrecht, Zarek Contreras, Kimberly Wahl-Villarreal, Mitch Sternberg, Bradley O. Christoffersen

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Reforestation in the Lower Rio Grande Valley (LRGV) of Texas began in the 1960s and to date over 6,475 ha of land has been reforested. However, there has been minimal assessment to understand differential species success, compositional trends, and the aboveground C sequestration potential of these developing forests. We coupled quantitative planting information of >50 native woody tree and shrub species with surveys of 5,223 stems of 4,606 individuals in a chronosequence of restored forests ranging in age from 1 to 33 years to estimate species-specific mortality rates, biomass accumulation and recruitment, as well as compositional trends in the herbaceous …

Distribution And Genomic Diversity Of Pollen-Borne Viruses And Viroids At The Interface Of Peach And Wild Prunus Spp. In The Southeastern United States, Fabian Omar Rodriguez Bonilla

All Theses

Prunus necrotic ringspot virus (PNRSV), prune dwarf virus (PDV), and peach latent mosaic viroid (PLMVd) are important pollen-borne pathogens that affect peach orchards in the southeastern United States. My aim with this research is to identify potential sources of virus/viroid inoculum sources in the wild and determine pathogen movement and interactions between wild Prunus spp. and cultivars of peach (P. persica). In Chapter I, I review the literature on pollen borne viruses and viroids in peach. In Chapter II, I surveyed for these pathogens near peach production areas in South Carolina and Georgia, sampling from three endemic wild …

Chromosome-Level Thlaspi Arvense Genome Provides New Tools For Translational Research And For A Newly Domesticated Cash Cover Crop Of The Cooler Climates, Adam Nunn, Isaac Rodríguez-Arévalo, Zenith Tandukar, Katherine Anna Frels, Adrián Contreras-Garrido, Pablo Carbonell-Bejerano, Panpan Zhang, Daniela Ramos Cruz, Katharina Jandrasits, Christa Lanz, Anthony Brusa, Marie Mirouze, Kevin Dorn, David W. Galbraith, Brice A. Jarvis, John C. Sedbrook, Donald L. Wyse, Christian Otto, David Langenberger, Peter F. Stadler, Detlef Weigel, M. David Marks, James A. Anderson, Claude Becker, Ratan Chopra

Department of Agronomy and Horticulture: Faculty Publications

Thlaspi arvense (field pennycress) is being domesticated as a winter annual oilseed crop capable of improving ecosystems and intensifying agricultural productivity without increasing land use. It is a selfing diploid with a short life cycle and is amenable to genetic manipulations, making it an accessible field-based model species for genetics and epigenetics. The availability of a high-quality reference genome is vital for understanding pennycress physiology and for clarifying its evolutionary history within the Brassicaceae. Here, we present a chromosome-level genome assembly of var. MN106-Ref with improved gene annotation and use it to investigate gene structure differences between two accessions (MN108 …

Floating Treatment Wetlands For Brackish Waters: Plant Selection And Nutrient Uptake Potential., Andrea Landaverde

All Theses

Brackish water bodies in coastal regions provide critical ecosystem services that support human and environmental health. Anthropogenic activities such as agricultural and industrial activities, construction, urban settlements, and tourism contribute to increased inputs of nitrogen (N) and phosphorus (P) in brackish coastal ecosystems. Excess nutrients can lead to impaired water quality and affect marine organisms. Floating treatment wetlands (FTWs) are a vegetated-base technology used to remove contaminants from water column, that has been mainly studied and applied in freshwater systems. Application of FTWs in brackish systems requires further investigation, as high salinity in brackish waters could result in toxicity to …

Effects Of Thermal Processing On Peach Puree Of Different Cultivars: Analysis Of Biochemical Alteration, Non-Enzymatic Browning Reaction, And Color Changes, James Hayes

All Theses

The effects of pasteurization temperature and time on the change in seven peach puree variables over a 6-week accelerated shelf-life test (35°C) were evaluated. The variables of interest were three color measures [ L* (lightness), a* (redness), and b* (yellowness)]; two brown pigment measures [spectrophotometric absorption at 420 nm (Browning Index) and 443 nm (Hydroxymethylfurfural)]; °Brix; and pH). Puree was collected from three different cultivars (2 freestone and 1 clingstone) and puree samples from each cultivar were subjected to 20 combinations of pasteurization temperatures (70°C, 80°C, 90 °C, 100°C) and same hold times (0 minutes, 1 minute, 3 minutes, 5 …

Enabling Breeding For Targeted Heat Requirement In Peach, Omer Atagul

All Theses

Peach [Prunus persica (L.) Batsch] germplasm varies in heat requirement and bloom time. This variability can be utilized in breeding for targeted environment or overall climate resilience. Development of molecular tools to aid in targeted selection of dormancy related traits is needed to support breeding for these traits. This project furthers our understanding of heat requirement accumulation diversity and genetic control in peach.

Peach bloom date (BD) is determined by the dynamic relationship of temperature requirements, from the sequential fulfillment of chill requirement (CR) and heat requirement (HR). Knowledge of HR and its influence on BD would provide deeper …

Genetic Control Of Prickles And Plant Height In Blackberry, Carmen Johns

Graduate Theses and Dissertations

The fresh-market blackberry (Rubus L. subgenus Rubus Watson) industry has been expanding for the past two decades. Blackberry market growth can be attributed to many factors including expanded production regions, improved production systems, and release of superior cultivars. Blackberry breeding is a time- and labor-intensive process which would benefit from implementation of molecular markers for highly heritable, important traits. Next generation sequencing, a high-quality reference genome, and software capable of analyzing this complex genome were applied in a genome-wide association study (GWAS) to reveal maker-trait associations related to prickles and plant height variation in fresh-market blackberry. In 2020 and 2021, …

Investigation Of The Binding Domain Interfaces Of The C-Terminus Of The Albino3 Insertase And The 43kda Chloroplast Signal Recognition Particle Subunit Via Single Molecule Förster Resonance Energy Transfer, Amanda Tomanek

Chemistry & Biochemistry Undergraduate Honors Theses

Fluorescent labeling is a technique used for visualizing functional groups contained in biomolecules by fluorescence imaging. This technique was used in this project to analyze post-translational targeting of light-harvesting chlorophyll-binding proteins (LHCP), which are the core complexes that harvest sunlight to drive photosynthetic electron transfer. This protein is synthesized in the cytosol and post-translationally targeted to the stroma of chloroplasts. CpSRP43 is a signal recognition particle (SRP) subunit unique to chloroplasts, which has been shown to interact with the stroma-soluble C-terminus of the thylakoid-bound Albino3 insertase (Alb3-Cterm). In the chloroplast stroma, targeting to thylakoids is performed via the cpSRP pathway …

Epidemiology And Impacts Of A Leaf Spot Disease In Veratrum Viride (Melanthiaceae), Leeah R. Sutton, Foster Levy

Undergraduate Honors Theses

Fungal phytopathogens can cause disease epidemics in crops, weeds, and
populations of native plants. To investigate the impact of a foliar phytopathogen on the native herbaceous species, Veratrum viride, a demographic and disease assessment was carried out on two high elevation grassy bald populations on Roan Mountain, Tennessee. A leaf spot disease impacted all plants in both populations, causing widespread premature senescence of leaves and stems. Disease severity increased over the course of the growing season. Based on host disease symptoms and fungal conidia morphology, Pseudocercosporella sublineolata was shown to be the causal pathogen. A study of herbarium specimens …

Antimicrobial Assay Of Sagebrush Roots, Lauren Rachel (Moody) Mcfadden

Undergraduate Honors Capstone Projects

Plants produce secondary metabolites for various functions, one of which is antibacterial activities. Sagebrush has historically been used by Native Americans for different medicinal purposes, suggesting that it may have secondary metabolites that would have medicinal values, including antimicrobial activities, and can be a natural source for antibiotics. This study aims to carry out the antimicrobial activity of Sagebrush root extract against a handful of bacteria. We tested the antimicrobial activity of root extract of Sagebrush against six bacteria such as Bacillus subtilis, Bacillus cereus, E. coli DHSα (Lab cloning strain), Agrobacterium tumefaciens GV3101 (Lab cloning strain), Pseudomonas …

Opportunities For Optimal Apple Production Management In Arid Conditions, Sam Johnson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Apple trees are susceptible to biotic and abiotic stresses in the Intermountain West. The arid climate along with non-ideal soils make apple production challenging. Also, as high-quality agricultural land is developed, crop production gets pushed to land that often is saline. Apple trees grow poorly in saline soils. If apples are going to be grown in Utah, rootstocks must be identified that will tolerate saline soils. The USDA rootstock breeding program produced some rootstocks that may show salt tolerance. This project assessed the salt tolerance of these apple rootstocks in the greenhouse and in the field. Test rootstocks were compared …

Temporal Dynamics And Seed Dispersal In Plant-Frugivore Communities Of The Dominican Republic, Spencer Christian Schubert

Biological Sciences Theses & Dissertations

Plant-animal mutualisms are a foundational component of biodiversity in terrestrial ecosystems. Most tropical forest plants have adapted to produce fleshy fruits to attract frugivorous animals to disperse seeds. Interaction patterns among plant taxa and their seed dispersers are driven by a complex suite of factors involving their evolutionary history and environmental context, and the structure of these mutualistic networks are theoretically tied to their ecological function. I carried out a series of field studies to investigate the temporal dynamics of mutualistic interactions of plant and avian frugivore communities in the central Dominican Republic and how their characteristics affect seed dispersal …

Impact Of Delaying Irrigation On Wilting, Seed Yield, And Other Agronomic Traits Of Determinate Mg5 Soybean, Francia Ravelombola, Andrea Acuna, Liliana Florez-Palacios, Chengjun Wu, Derrick Harrison, Maria De Oliveira, Joshua Winter, Marcos Da Silva, Trenton Roberts, Christopher Henry, Fernando Grignola, Ehsanollah Shakiba, Leandro Mozzoni

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Soybean production in the U.S. Mid-South relies heavily on irrigation with 85% of soybean surfaces irrigated in Arkansas. Reduction in irrigation due to water quantity restrictions will significantly affect soybean seed yield, making variety selection increasingly important. The objective of the study was to assess if irrigation onsets at different reproductive stages affect wilting, seed yield, and key agronomic traits on determinate maturity group 5 (MG 5) soybean. One-hundred sixty-five F₄-derived populations of recombinant inbred lines with determinate growth habit, similar maturity, and contrasting wilting potential were planted in an augmented strip-plot design in four environments as a …

Towards Conserving Crop Wild Relatives Along The Texas–Mexico Border: The Case Of Manihot Walkerae, Gisel Garza, Crystian Sadel Venegas Barrera, Jon Dale, José Guadalupe Martínez-Ávalos, Teresa Patricia Feria-Arroyo

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Walker’s Manihot, Manihot walkerae, is an endangered species endemic to south Texas and northeastern Mexico and is a Crop Wild Relative (CWR) of the international and economically important crop cassava (M. esculenta). Manihot walkerae is globally endangered (IUCN’s Redlist, Texas list, USA); however, it is not recognized on the Mexican list of endangered species (NOM-059-SEMARNAT). We assessed the status of M. walkerae in Mexico and re-evaluated its global status. According to our analysis, M. walkerae should be considered an endangered species based on the IUCN’s assessment method and a threatened species in Mexico based on the Mexican criteria. Our findings …

Agricultural Intensification Can Help Protect The Amazon Forest And Reduce Global Warming / Protecting The Amazon Forest And Reducing Global Warming Via Agricultural Intensification, Fabio R. Marin, Alencar J. Zanon, Juan P. Monzon, José F. Andrade, Evandro H.F.M. Silva, Gean L. Richter, Luis A.S. Antolin, Bruna S.M.R. Ribeiro, Giovanna G. Ribas, Rafael Battisti, Alexandre B. Heinemann, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

The Amazon basin includes 550 M ha covered with rainforests, with 60% of this area being in Brazil. Conversion of rainforest for soybean production raises concerns about the degree to which Brazil can reconcile production and environmental goals. Here we investigated the degree to which intensification could help Brazil produce more soybean without further encroachment of the Amazon Forest. Our analysis shows that continuation of current trends in soybean yield and area would lead to conversion of additional 5.7 M ha of forests and savannas during the next 15 years, with an associated 2550 Mt of CO2eq released into the …

Rare Elfin Abundance Correlates With Host Plant Density, Matthew Look

Biology Student Scholarship

Matthew Look ’22
Major: Environmental Biology
Faculty Mentor: Dr. Rachael Bonoan, Biology

The rare frosted elfin butterfly (Callophrys irus) is a host plant specialist; it lays eggs on only two plant species, including small yellow indigo (Baptisia tinctoria). This makes the butterfly especially vulnerable to habitat fragmentation. Using indigo samples and butterfly survey data, we examined the effect of indigo quantity and quality on elfin abundance at Gavins Pond (Sharon/Foxboro, MA). Indigo density significantly affected butterfly count—frosted elfins were more likely to be spotted in patches with high indigo density. While nutritional analysis is ongoing, current findings suggest that augmenting …

Evaluating Alternative Ebullition Models For Predicting Peatland Methane Emission And Its Pathways Via Data–Model Fusion, Shuang Ma, Lifen Jiang, Rachel M. Wilson, Jeff P. Chanton, Scott Bridgham, Shuli Niu, Colleen M. Iversen, Avni Malhotra, Jiang Jiang, Xingjie Lu, Jason Keller, Xiaofeng Xu, Daniel M. Ricciuto, Paul J. Hanson, Yiqi Luo

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Understanding the dynamics of peatland methane (CH₄) emissions and quantifying sources of uncertainty in estimating peatland CH₄ emissions are critical for mitigating climate change. The relative contributions of CH₄ emission pathways through ebullition, plant-mediated transport, and diffusion, together with their different transport rates and vulnerability to oxidation, determine the quantity of CH₄ to be oxidized before leaving the soil. Notwithstanding their importance, the relative contributions of the emission pathways are highly uncertain. In particular, the ebullition process is more uncertain and can lead to large uncertainties in modeled CH₄ emissions. To improve model simulations …

Climate Change And Management Impacts On Soybean N Fixation, Soil N Mineralization, N2O Emissions, And Seed Yield, Elvis F. Elli, Ignacio A. Ciampitti, Michael J. Castellano, Larry C. Purcell, Seth Naeve, Patricio Grassini, Nicolas C. La Menza, Luiz Moro Rosso, André F. De Borja Reis, Péter Kovács, Sotirios V. Archontoulis

Department of Agronomy and Horticulture: Faculty Publications

Limited knowledge about how nitrogen (N) dynamics are affected by climate change, weather variability, and crop management is a major barrier to improving the productivity and environmental performance of soybean-based cropping systems. To fill this knowledge gap, we created a systems understanding of agroecosystem N dynamics and quantified the impact of controllable (management) and uncontrollable (weather, climate) factors on N fluxes and soybean yields. We performed a simulation experiment across 10 soybean production environments in the United States using the Agricultural Production Systems sIMulator (APSIM) model and future climate projections from five global circulation models. Climate change (2020–2080) increased N …

Hybrid Incompatibilities In Metrosideros, Jacyln Martinez

Undergraduate Research Symposium Podium Presentations

Prediction: Postzygotic reproductive isolating barriers, relating to hybrid incompatibilities are contributing to the speciation of Metrosideros

Big Bud Disease In Tomatoes And Peppers, Claudia Nischwitz, Erin Petrizzo

All Current Publications

This fact sheet provides information on the symptoms of big bud on tomatoes and peppers. It reviews the disease cycle and recommendations on controlling beet leafhopper and managing big bud disease in Utah.

P-Flux: A Phosphorus Budget Dataset Spanning Diverse Agricultural Production Systems In The United States And Canada, M. R. Williams, P. Welikhe, J. Bos, K. King, M. Akland, D. J. Augustine, C. Baffaut, E. G. Beck, A. Bierer, D. D. Bosch, Elizabeth H. Boughton, C. B. Brandani, E. Brooks, Anthony R. Buda, M. Cavigelli, J. Faulkner, G. Feyereisen, A. Fortunato, B. Lee, Jason M. Unrine

Plant and Soil Sciences Faculty Publications

No abstract provided.

Roles Of Phospholipase Dε In Arabidopsis And Soybean Response To Nitrogen Deficiency, Shuaibing Yao

Dissertations

Phospholipase D (PLD) hydrolyzes phospholipids to produce phosphatidic acid (PA) and plays important roles in plant growth, development, and stress response. Of 12 PLDs in Arabidopsis, PLDε is involved in nitrogen response in Arabidopsis and canola, but the mechanism remained elusive. This study was undertaken to investigate how PLDε mediates plant response to nitrogen availability. Nitrogen deficiency induces an increase in PLDε transcript and protein levels and an increased association with intracellular membranes. PLDε interacts with autophagy-related protein 8e (ATG8e), and two of the four predicted ATG8-interacting motifs in PLDε are required for PLDε-ATG8e interactions. PLDε hydrolyzes phosphatidylethanolamine (PE) conjugated …

Microbial Diversity And Community Structure In Sediments Associated With The Seagrass (Thallassia Testudinum) In Apalachicola Bay, Florida, Rahma Ahmed, Thomas Mcelroy, Troy Mutchler

Symposium of Student Scholars

Seagrass is an angiosperm which provides many ecosystem services in coastal areas, such as providing food, shelter and nurseries for many species, and decreasing the impact of waves on shorelines. A global assessment reported that 29% of known seagrass meadows are in a state of decline due to the effects of human activity. Seagrass is commonly found in shallow marine waters where they form meadows containing a microbiome that plays an important role in providing nutrients for seagrass growth, though little is known about the microorganisms within the seagrass meadow sediments. Our project collected sediments from seagrass meadows and adjacent …

The Effect Of Clay On The Inhibitory Effect Of Mustard Seed Meal On Velvetleaf Seedling Growth, Heeyun Oh

Honors Theses

Mustard seed meal (MSM) has been studied as a biofumigant in suppressing weed growth in an organic-friendly way. Previous studies have shown that MSM in the presence of elevated sand content was highly effective in suppressing the germination of velvetleaf seeds, and that as clay/silt in sand content increased, MSM effectiveness decreased in suppressing seed germination. Based on these results, it was postulated that clay may have effects on MSM by inhibiting this biofumigant from suppressing weed growth. Two different types of pure clay--kaolin and montmorillonite--were selected with their increasing concentrations. Low concentrations of clay do not seem to influence …

Peningkatan Hasil Tiga Varietas Bawang Merah Asal Biji Dengan Pemanfaatan Pupuk Organik Ikan Di Dataran Tinggi Basah, Bina Karo, Agustina Erlinda Marpaung, Susilawati Barus, Rina Christina Hutabarat, Rasiska Tarigan

Jurnal Kultivasi

Salah satu cara untuk meningkatkan produktivitas tanaman bawang merah pada musim hujan yaitu dengan penggunaan bahan tanaman yang sehat melalui penggunaan benih true shallot seeds (TSS), karena secara umum penggunaan umbi bawang merah sebagai bahan perbanyakan tidak efektif di musim hujan. Penelitian ini bertujuan untuk mengetahui dosis dan jenis pupuk organik ikan yang dapat meningkatkan produksi tiga varietas bawang merah asal TSS di dataran tinggi basah. Penelitian ini dilaksanakan mulai bulan Mei – September 2018 di Instalasi Penelitian dan Pengkajian Teknologi Pertanian (IP2TP) Berastagi, Kabupaten Karo, pada ketinggian tempat 1340 meter dengan jenis tanah Andisol. Rancangan yang digunakan adalah Rancangan …