Digital Commons Network^™

Identification Of Candidate Genes And Genomic Selection For Seed Protein In Soybean Breeding Pipeline, Jun Qin, Fengmin Wang, Qingsong Zhao, Ainong Shi, Tiantian Zhao, Qijian Song, Waltram Ravelombola, Hongzhou An, Long Yan, Chunyan Yang, Mengchen Zhang

Horticulture Faculty Publications and Presentations

Soybean is a primary meal protein for human consumption, poultry, and livestock feed. In this study, quantitative trait locus (QTL) controlling protein content was explored via genome-wide association studies (GWAS) and linkage mapping approaches based on 284 soybean accessions and 180 recombinant inbred lines (RILs), respectively, which were evaluated for protein content for 4 years. A total of 22 single nucleotide polymorphisms (SNPs) associated with protein content were detected using mixed linear model (MLM) and general linear model (GLM) methods in Tassel and 5 QTLs using Bayesian interval mapping (IM), single-trait multiple interval mapping (SMIM), single-trait composite interval mapping maximum …

Seed Longevity And Climatic Tolerance Of San Joaquin Wooly-Threads (Monolopia Congdonii; Asteraceae) An Endangered Plant From The San Joaquin Desert, California, Paul Excoffier

Master's Theses

San Joaquin wooly-threads (Monolopia congdonii; Asteraceae) is a federally-listed, endangered annual plant species from the desert areas of the San Joaquin Valley. Its limited range puts it at risk of extinction if the climate changes in such a way as to hinder its growth and reproduction. The primary aims of the study were to 1) determine how long-lived the seeds of the M. congdonii are, a key determinant of survival of desert annual plant populations through long droughts and 2) determine how severely hotter, drier conditions impact the ability of emerged plants to grow and reproduce. Secondarily, I …

Medicinal Plant Use For Type-2 Diabetes Treatment In The Traditional Vietnamese Medicine System Of Southern Vietnam, Lan Truong

Dissertations, Theses, and Capstone Projects

This ethnobotanical study examines the traditional health care system of the Mekong River Delta in Vietnam. The basic inquiry focuses on how the healers in the traditional Vietnamese medicine (TVM) system are treating a disease relatively new in Vietnam, type-2 diabetes (T2D). The study includes a description of the system in which the healers work. The research design compares two locations, one on the mainland (Rạch Giá City) and the other on a nearby island (Phú Quốc Island).

There are six chapters. The first chapter establishes foundational information about the region, population, and the traditional medical system. The results of …

Differential Gene Expression In Tall Fescue Tissues In Response To Water Deficit, Manohar Chakrabarti, Padmaja Nagabhyru, Christopher L. Schardl, Randy D. Dinkins

School of Integrative Biological & Chemical Sciences Faculty Publications

Tall fescue (Festuca arundinacea Schreb.) is a popular pasture and turf grass particularly known for drought resistance, allowing for its persistence in locations that are unfavorable for other cool-season grasses. Also, its seed-borne fungal symbiont (endophyte) Epichloë coenophiala, which resides in the crown and pseudostem, can be a contributing factor in its drought tolerance. Because it contains the apical meristems, crown survival under drought stress is critical to plant survival as well as the endophyte. In this study, we subjected tall fescue plants with their endophyte to water-deficit stress or, as controls with normal watering, then compared plant …

Wastewater-Recycled Struvite As A Phosphorus Source In A Wheat-Soybean Double-Crop Production System In Eastern Arkansas, Niyi Sunday Omidire, Kristofor R. Brye

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Fertilizer-phosphorus (P) sources are mainly derived from rock phosphate (RP), which is a finite, actively mined resource. With growing human populations globally, alternative P sources are vitally important to ensure future food security. Precipitation of the mineral struvite (MgNH₄PO₄·6H₂O) from wastewater could be a potential alternative fertilizer-P option from crop production. The objective of this study was to evaluate the effects of chemically precipitated struvite (CPST), compared with triple superphosphate (TSP) and an unamended control (UC) treatment, and irrigation (irrigated and non-irrigated/dryland) on above- (dry matter, yield, and tissue-N, -P, and -Mg concentrations and …

Field-Evolved Δg210-Ppo2 From Palmer Amaranth Confers Pre-Emergence Tolerance To Ppo-Inhibitors In Rice And Arabidopsis, Pamela Carvalho-Moore, Gulab Rangani, Ana Claudia Langaro, Vibha Srivastava, Aimone Porri, Steven J. Bowe, Jens Lerchl, Nilda R. Burgos

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Resistance to protoporphyrinogen IX oxidase (PPO)-inhibitors in Amaranthus palmeri and Amaranthus tuberculatus is mainly contributed by mutations in the PPO enzyme, which renders herbicide molecules ineffective. The deletion of glycine210 (ΔG210) is the most predominant PPO mutation. ΔG210-ppo2 is overexpressed in rice (Oryza sativa c. ‘Nipponbare’) and Arabidopsis thaliana (Col-0). A foliar assay was conducted on transgenic T1 rice plants with 2× dose of fomesafen (780 g ha−1), showing less injury than the non-transgenic (WT) plants. A soil-based assay conducted with T2 rice seeds confirmed tolerance to fomesafen applied pre-emergence. In agar medium, root growth of WT …

Targeting Tor And Snrk1 Genes In Rice With Crispr/Cas9, Bhuvan Pathak, Chandan Maurya, Maria C. Faria, Zahra Alizada, Soumen Nandy, Shan Zhao, Muhammed Jamsheer K, Vibha Srivastava

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Genome targeting with CRISPR/Cas9 is a popular method for introducing mutations and creating knock-out effects. However, limited information is currently available on the mutagenesis of essential genes. This study investigated the efficiency of CRISPR/Cas9 in targeting rice essential genes: the singleton TARGET OF RAPAMYCIN (OsTOR) and the three paralogs of the Sucrose non-fermenting-1 (SNF1)-related kinase 1 (OsSnRK1α), OsSnRK1αA, OsSnRK1αB and OsSnRK1αC. Strong activity of constitutively expressed CRISPR/Cas9 was effective in creating mutations in OsTOR and OsSnRK1α genes, but inducible CRISPR/Cas9 failed to generate detectable mutations. The rate of OsTOR mutagenesis was relatively lower and only the …

Plectus Of The Prairie: A Case Study Of Taxonomic Resolution From A Nematode Biodiversity Survey, Abigail Borgmeier, Kaitlin Gattoni, Timothy Harris, Rebecca Higgins, Peter Mullin, Dorota Porazinska, Kirsten S. Powers, David A. Wedin, Tom Powers

Department of Plant Pathology: Faculty Publications

Taxonomic resolution is a critical component of biodiversity assessments. In this case study, we examined a single taxon within a larger study of nematode diversity to evaluate the taxonomic resolution of different diversity assessment methods. The selected taxon was the microbial-feeding genus Plectus, a group considered to include multiple cosmopolitan species. The methods included a morphological evaluation by light microscopy, Sanger sequencing of PCR amplicons of COI and 18S gene regions, and 18S metabarcoding sequencing. The study sites were 15 remnant tallgrass prairie plots in eastern Nebraska. In the morphological analysis, we observed two basic morphotypes, a short-tailed form …

Young Forests And Fire: Using Lidar–Imagery Fusion To Explore Fuels And Burn Severity In A Subalpine Forest Reburn, Kristin H. Braziunas, Diane C. Abendroth, Monica G. Turner

Aspen Bibliography

Anticipating fire behavior as climate change and fire activity accelerate is an increasingly pressing management challenge in fire-prone landscapes. In subalpine forests adapted to infrequent, stand-replacing fire, self-limitation of burn severity in short-interval fire is incompletely understood. Spatially explicit fuels data can support assessments of landscape-scale fire risk and fuel feedbacks on burn severity. For a ~1450-km² largely forested landscape in the US Northern Rocky Mountains, we used airborne lidar and imagery to predict and map canopy and surface fuels. In a fire that burned mature (>125-year-old) and also reburned young (~30-year-old) subalpine forest, we then asked: (1) …

Climate Resilient Potato Systems For The 21st Century And Beyond, Brett A. Lynn

Doctor of Plant Health Program: Dissertations and Student Research

Climate change’s effects will dramatically reshape food systems and food security in the twenty-first century and beyond. Given potato’s susceptibility to heat and drought, climate change is poised to disproportionately affect potato production. Globally, potato is the fourth most important crop and yields a higher caloric density than any other commercial crop. Thus, disruptions to potato production bear serious implications for global food security.

In the United States, considerable potato production occurs in the arid West, which already faces water scarcity. This scarcity is anticipated to increase in many areas due to climate change. In addition to scarcity, growers will …

Association Mapping Across A Multitude Of Traits Collected In Diverse Environments In Maize, Ravi V. Mural, Guangchao Sun, Marcin Grzybowski, Michael C. Tross, Hongyu Jin, Christine Smith, Linsey Newton, Carson M. Andorf, Margaret R. Woodhouse, Addie M. Thompson, Brandi Sigmon, James C. Schnable

Center for Plant Science Innovation: Faculty Publications

Classical genetic studies have identified many cases of pleiotropy where mutations in individual genes alter many different phenotypes. Quantitative genetic studies of natural genetic variants frequently examine one or a few traits, limiting their potential to identify pleiotropic effects of natural genetic variants. Widely adopted community association panels have been employed by plant genetics communities to study the genetic basis of naturally occurring phenotypic variation in a wide range of traits. High-density genetic marker data—18M markers—from 2 partially overlapping maize association panels comprising 1,014 unique genotypes grown in field trials across at least 7 US states and scored for 162 …

Transcriptional Analysis Of Maize Under Drought Stress And The Impact Of Plant Maturity, Oliver J. Oviedo

Biology ETDs

Climate change related drought is projected to harm maize production. Water use strategies can help mitigate the impact of drought on crop yield. However, little is known about maize metabolic response to drought at different developmental stages. To shed light on this, drought conditions were applied to maize at the six-leaf stage (V6), twelve leaf stage (V12), and tassel stage (VT). V6 and VT took eight days to achieve a low stomatal conductance threshold, but V12 took 16 days. Differential gene expression analysis of the transcriptome indicates that V6 showed the most response with 53 impacted metabolic pathways, many of …

Efficacy And Timing Of Application Of Fungicides, Biofungicides, Host-Plant Defense Inducers, And Fertilizer To Control Phytophthora Root Rot Of Flowering Dogwoods In Simulated Flooding Conditions In Container Production, Krishna Neupane, Bhawana Ghimire, Fulya Baysal-Gurel

Agricultural and Environmental Sciences Faculty Research

Phytophthora root rot caused by Phytophthora cinnamomi Rands is one of the major diseases of flowering dogwoods (Cornus florida L.). The severity of root rot disease increases when the plants are exposed to flooding conditions. A study was conducted to determine the efficacy and timing of application of different fungicides, biofungicides, host plant defense inducers, and fertilizer to manage Phytophthora root rot in month-old seedlings in simulated flooding events for 1-, 3-, and 7- days. Preventative treatments were drench applied 3 weeks and 1 week before flooding whereas curative treatments were applied 24 hrs. after flooding. Dogwood seedlings were inoculated …

Genetically Explicit Model May Explain Multigenerational Control Of Emergent Turing Patterns In Hybrid Mimulus, Emily Simmons

Biology and Medicine Through Mathematics Conference

No abstract provided.

Sodium Mediates Developmentally Plastic Responses In Plants And Herbivores, Luis Santiago-Rosario

LSU Doctoral Dissertations

Sodium plays a crucial role in organismal performance, trophic-level interactions, and eco-evolutionary dynamics. For plants, sodium impacts osmoregulation, growth, and water uptake. For animals, sodium is essential influencing osmoregulatory processes, muscle and neural development, and blood regulation. My dissertation aims to disentangle why sodium mismatch affects resource-consumer interactions and its influence on morphological and behavioral plasticity. First, I identified how sodium impacts plant performance and sodium accumulation strategies. I initially focused my research on understanding how increasing substrate sodium affects plant growth and tissue sodium accumulation strategies in controlled settings using a systematic review approach. I found that saltier plants …

Cytotoxic Activity Of Non-Specific Lipid Transfer Protein (Nsltp1) From Ajwain (Trachyspermum Ammi) Seeds, Saud O. Alshammari, Taibah Aldakhil, Qamar A. Alshammari, David Salehi, Aftab Ahmed

Pharmacy Faculty Articles and Research

Background

Trachyspermum ammi, commonly known as Ajwain, is a member of the Apiaceae family. It is a therapeutic herbal spice with diverse pharmacological properties, used in traditional medicine for various ailments. However, all previous studies were conducted using small molecule extracts, leaving the protein’s bioactivity undiscovered.

Aim

The current study aimed to demonstrate the cytotoxic activity of Ajwain non-specific lipid transfer protein (nsLTP1) in normal breast (MCF10A), breast cancer (MCF-7), and pancreatic cancer (AsPC-1) cell lines. Also, to evaluate its structural stability in human serum as well as at high temperature conditions.

Methods

The cytotoxic activity of Ajwain nsLTP1 was …

The Plant And The Pathogen: Elucidating The Relationship Between Root-Knot Nematodes, Ph Levels, And Arabidopsis Thaliana Development, Rachel Garnett

Undergraduate Theses and Capstone Projects

Root-knot nematodes (RKNs) within the Meloidogyne genus are considered one of the largest threats to plant health and subsequent crop yield and profit (Forghani and Hajihassani 2020; Bernard et al. 2017). As a pest that presents global consequences, its mitigation through sustainable interventions may confer results for the treatment of similar plant pathogens. A member of the Brassicaeae family, Arabidopsis thaliana, was chosen for this study to determine how this model plant responds to RKN-standard pH media. pH was varied between control and experimental groups, and the phenotypic variables of primary root length and plant height were observed and analyzed. …

Investigation Of The Direct Effect Of A Precision Ascophyllum Nodosum Biostimulant On Nitrogen Use Efficiency In Wheat Seedlings, Łukasz Łangowski, Oscar Goñi, Elomofe Ikuyinminu, Ewan Feeney, Shane O'Connell

Publications

Reduction in the greenhouse gas (GHG) emissions and nitrogen (N) pollution of ground water by improving nitrogen use efficiency (NUE) in crops has become an intensively investigated research topic in pursuit of a more sustainable future. Although, distinct solutions have been proposed there are only a few reports documenting the detailed interplay between observed plant growth dynamics and changes in plant N related transcriptional and biochemical changes. It was previously demonstrated that the application of a formulated biostimulant (PSI-362) derived from Ascophyllum nodosum (ANE) improves N uptake in Arabidopsis thaliana and in barley. In this study, the effect of PSI-362 …

A Common Garden Experiment Suggests Local Adaptation In Stomata Size But Not Stomata Density In Common Milkweed (Asclepias Syriaca), Alyssa Gundel

Undergraduate Theses and Capstone Projects

Local adaptation is a common process that occurs in organisms with wide geographic ranges to maximize fitness in different environments. One specific species that has been shown to have certain locally adapted traits is Common Milkweed, Asclepias syriaca. A handful of these traits include height, stem count, number of leaves, and length and width of the leaves. The size and density of stomata, the pores underneath the leaf used for gas exchange and transpiration, may also be influenced by environmental conditions; however, this relationship has not been studied in common milkweed. In order to analyze population-level differences in the density …

Evaluating Cover Crops To Determine The Best Management Practice For The Suppression Of Tall Waterhemp And Italian Ryegrass, Samuel R. Reeves

Theses and Dissertations

To combat herbicide resistance among weeds, non-herbicide methods of control, such as cover crops, are becoming widely adapted. Experiments were conducted to determine how to effectively establish and manage cover crops in order to suppress tall waterhemp and Italian ryegrass and to assess their overall impact on soybean growth and yield. Various cover crop establishment methods were evaluated, and it was determined that interseeding at the R7 growth stage of soybean was the least effective method for proper cover crop establishment. Biomass data demonstrated that interseeding created the least amountof cover crop biomass, with no differences found among the other …

Procedures For Genetic Modification Of Miscanthus X Giganteus, A Biomass Crop, Anjali Arpan

Theses and Dissertations

Development of genetic improvement procedures for the bioenergy crop, Miscanthus × giganteus (M×g; triploid), are desired for trait improvement. Agrobacterium tumefaciens has been used in other Miscanthus spp. for genetic improvement, but not in M×g, nor have more than a few genes been introduced at a given time. Transformation procedures for M×g were developed; studies included use of A.tumefaciens (strain LBA4404) and A. rhizogenes (strain A4) for introduction of seven genes isolated (by other researchers) from Sorghum bicolor involved in sorgoleone biosynthesis (an allelopathic compound), and selectable marker gene neomycin phosphotransferase II. Procedural development included generation of …

Evaluation Of Agronomic Performance And Weed Control In Soybean Grown With Different Row Configurations, Planting Dates, And Soil Textures, Franklin Read Kelly

Theses and Dissertations

Planting date, seeding rate, soil texture, and row configuration are important factors in soybean production. Each of these factors can impact overall production and yield of soybean immensely. Growers can have difficulty making decisions about how to best manage their production systems with these factors in mind. Therefore, research was conducted from 2019 to 2021 at the Delta Research and Extension Center in Stoneville, MS, to evaluate the agronomic performance, yield components, and weed control of soybean planted with different planting dates, row configurations, soil textures and/or seeding rates. Common row configurations utilized in Mississippi soybean production were compared to …

Effects Of Pruning Timing, Leaf Removal, And Shoot Thinning On 'Midsouth' Winegrape Quality In South Mississippi, Haley Nicole Williams

Theses and Dissertations

‘MidSouth’, a relatively low maintenance interspecific hybrid bunch grape currently grown in South Mississippi, has low sugar and high acid levels for red wine use. Two studies, conducted at the Mississippi State University McNeill Research Unit in 2020 and 2021, determined the effects of pruning timing, leaf removal, and shoot thinning on ‘MidSouth’ development and fruit and wine quality. Treatments in the first study included early versus normal pruning timing, both with and without leaf removal, and treatments in the second study included leaf removal, shoot thinning, and control vines. Cluster temperatures, leaf chlorophyll, berries per cluster, berry and cluster …

Characterization Of Corynespora Cassiicola Resistance To The Quinone Outside Inhibitor Fungicides, Elucidation Of Fitness Parameters, And Defining Alternative Fungicide Product Strategies In Mississippi Soybean, Xiaopeng Wang

Theses and Dissertations

Target spot, caused by Corynespora cassiicola, is a common lower canopy disease of soybean in the southern United States. Given the recent resurgence of target spot and increasing reports of resistance to the quinone outside inhibitor (QoI) fungicide class within C. cassiicola, a survey of C. cassiicola from the Mississippi soybean production system was initiated in 2019 to determine the nature of its resistance mechanisms. A total of 819 monoconidial isolates were collected from 228 geographic field locations in 75 Mississippi counties. The molecular mechanism of resistance was determined using a PCR-RFLP analysis by comparing nucleotide sequences in …

Reassessment Of Species Boundaries And Phylogenetic Relationships In The Desmodium Ciliare Complex (Fabaceae) Using Morphological And Dna Data, Joshua Wilkinson

Master's Theses

Desmodium (Beggar's ticks) is a generally weedy genus of approximately 280 species in the angiosperm family Fabaceae (Subfamily Papilionoideae, Tribe Desmodieae) characterized by indehiscent loments constricted into segments. Within the Southeastern U.S., the Desmodium ciliare group is one of two Desmodium species complexes that have been historically difficult, with much argument about the limits of species and the role of hybridization. There are three commonly recognized species within the D. ciliare group, D. ciliare (Muhl. ex Willd.) DC., Desmodium marilandicum (L.) DC., and D. obtusum (Muhl. ex Willd.) DC., with two supposed hybrids in addition to the …

Quantifying The Effects Of Abiotic Stress On Early Season Growth, Development, And Physiological Characteristics In Corn, Charles Hunt Walne

Theses and Dissertations

Corn is one of American agriculture's greatest success stories, where we have witnessed incredible increases in yield potential over the last half-century. However, abiotic stress is still the primary limiting factor preventing plants from reaching their true yield potential. In addition, agriculture is not exempt from the deleterious effects of changing weather patterns and the altered climate our world will face as time progresses. Thus, increasing our understanding of how crops interact with their environment both above and below the soil will be crucial to increasing production on a global scale while maximizing profitability at a local level. Five studies …

Investigating The Role Of Small Rna Pathways In Arabidopsis Shoot Gravitropism, Julia Lott

Honors Theses

The plant stem grows against the gravitational force, a phenomenon called negative gravitropism. In the model dicotyledonous plant Arabidopsis thaliana, gravity is sensed by starch-filled amyloplasts, which trigger the shoot gravitropic response through the action of a growth hormone called auxin. In the darkness, a group of transcription factors named PHYTOCHROME-INTERACTING FACTORS (PIFs) promote stem negative gravitropism by inhibiting the starch metabolism in the endodermal amyloplasts. Red light promotes starch metabolism and converts amyloplasts into other types of plastids (e.g., chloroplasts) through the red/far-red light photoreceptors—phytochromes. Consequently, red-light-grown seedlings lose starch granules in amyloplasts and exhibit agravitropic growth. However, the …

Restoration Through Reassembly: Evaluating The Role Of Native Plants In Combatting Chinese Tallow, Olaniyi Ajala

Electronic Theses and Dissertations

Non-native, invasive species disrupt ecological processes and functions, posing a serious threat to natural ecosystems. By examining the growth metrics of the non-native, invasive tree, Chinese tallow (Triadica sebifera [L.] Roxb.), hereafter tallow, across different flooding and light regimes, I investigated how restructuring native communities with valuable native species will prevent the reestablishment of tallow. I studied the changes in morphological and physiological traits of tallow when growing with water tupelo (Nyssa aquatica L.), sugarberry (Celtis occidentalis L.), and green ash (Fraxinus pennsylvanica Marshall). I found that in the non-flooded and high irradiance treatments, tallow's growth …

Isolation Of Arabidopsis Thaliana Plants Homozygous For An Insertional Inactivation Mutation Within Atprp4., Sydney Raitz, Timothy D. Trott

Faculty Works

The AtPRP4 gene in Arabidopsis thaliana has been shown to function in several specific parts of the plant’s cell wall. It is shown to be expressed in the seeds, radicles, roots, leaves, inflorescences, and embryos of Arabidopsis thaliana. These patterns have suggested unique functions for ATPRP4 in determining cell-type-specific wall structure during the development of a plant as well as contributing to defense reactions against physical damage to the plant and pathogen infection within the plant. In this study, a simple DNA prep was performed on the true leaves of Arabidopsis thaliana. Subsequent PCR reactions were performed using …

Climatic Influences On Summer Use Of Winter Precipitation By Trees, Gregory R. Goldsmith, Scott T. Allen, Sabine Braun, Rolf T. W. Siegwolf, James W. Kirchner

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Trees in seasonal climates may use water originating from both winter and summer precipitation. However, the seasonal origins of water used by trees have not been systematically studied. We used stable isotopes of water to compare the seasonal origins of water found in three common tree species across 24 Swiss forest sites sampled in two different years. Water from winter precipitation was observed in trees at most sites, even at the peak of summer, although the relative representation of seasonal sources differed by species. However, the representation of winter precipitation in trees decreased with site mean annual precipitation in both …