Digital Commons Network^™

The Circuitous Path To The Comparison Of Simulated Values From Crop Models With Field Observations, Albert Weiss, Wally Wilhelm

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The Journal of Agricultural Science, Cambridge has been a fixture in dissemination of crop simulation models and the concepts and data upon which they are built since the inception of computers and computer modeling in the mid-20th century. To quantify the performance of a crop simulation model, model outputs are compared with observed values using statistical measures of bias, i.e. the difference between simulated and observed values. While applying these statistical measures is unambiguous for the experienced user, the same cannot always be said of determining the observed or simulated values. For example, differences in accessing crop development can be …

Influence Of Resource Pulses And Perennial Neighbors On The Establishment Of An Invasive Annual Grass In The Mojave Desert, Rebecca E. Drenovsky, J. J. James, M. A. Caird, R. L. Sheley

Biology

Invasion by exotic annual grasses is one of the most significant threats to arid ecosystems in the western USA. Current theories of invasibility predict plant communities become more susceptible to invasion whenever there is an increase in the amount of unused resources. The objective of this field study was to examine how resource pulses and temporal variation in resource demand by the native shrub vegetation influences establishment of the invasive annual grass Schismus arabicus. Water and nitrogen were applied as pulses in early spring, mid-spring, or continuously throughout the growing season to plots containing either Atriplex confertifolia or Atriplex …

Whole-Genome Expression Profiling Defines The Hrpl Regulon Of Pseudomonas Syringae Pv. Tomato Dc3000, Allows De Novo Reconstruction Of The Hrp Cis Element, And Identifies Novel Coregulated Genes, Adriana O. Ferreira, Christopher R. Myers, Jeffrey S. Gordon, Gregory B. Martin, Monica Vencato, Alan Collmer, Misty D. Wehling, James R. Alfano, Gabriel Moreno-Hagelsieb, Warren F. Lamboy, Geneviene Declerck, David J. Schneider, Samuel W. Cartinhour

Department of Plant Pathology: Faculty Publications

Pseudomonas syringae pv. tomato DC3000 is a model pathogen of tomato and Arabidopsis that uses a hypersensitive response and pathogenicity (Hrp) type III secretion system (T3SS) to deliver virulence effector proteins into host cells. Expression of the Hrp system and many effector genes is activated by the HrpL alternative sigma factor. Here, an open reading frame-specific whole-genome microarray was constructed for DC3000 and used to comprehensively identify genes that are differentially expressed in wild-type and ΔhrpL strains. Among the genes whose differential regulation was statistically significant, 119 were upregulated and 76 were downregulated in the wild-type compared with the ΔhrpL …

Nebline, November/December 2006

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Extension Offers Guardianship Trainings Mandated By the Nebraska Supreme Court
Guardianships Happen for Variety of Reasons
Pruning Ornamental Plants
Spark Up the Fireplace with Color
Test Nitrogen Levels this Fall, Begin Planning for Spring Fertilization
Free Soybean Cyst Nematode Sample Kits Available
Farming No-Till Increases for Major Nebraska Crops, Better for Environment, Fuel Saved
Computerized Farm Financial Recordkeeping Workshops
Preparing a Thanksgiving Feast Does Not Have to be Difficult!
Monte Cristo Sandwich Recipe
$tretch Your Food Dollar with Healthy Snacks
Time-Saving Kitchen Tools for Holiday Gifts
President’s Notes — Alice’s Analysis
Household Hints: Tips for a Warm, Cozy and Efficient …

Hydrologic Properties Of Pervious Concrete, Joe D. Luck, Stephen R. Workman, Stephen F. Higgins, Mark S. Coyne

Plant and Soil Sciences Faculty Publications

Pervious concrete is concrete made by eliminating most or all of the fine aggregate (sand) in the concrete mix, which allows interconnected void spaces to be formed in the hardened product. These interconnected void spaces allow the concrete to transmit water at relatively high rates. The main objective of this project was to conduct research on the potential application of pervious concrete in agricultural settings, specifically for use in animal feed lots, manure storage pads, animal manure and bedding compost facilities, or floor systems in animal buildings. Laboratory tests were conducted on replicated samples of pervious concrete formed from two …

Convergence Of Agriculture And Energy: Implications For Research And Policy, Kenneth Cassman, Vernon Eidman, Eugene Simpson, Larry Berger, Robert Loomis, Marie Walsh, Todd A. Peterson, Edward Runge

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Access to an adequate energy supply at reasonable cost is crucial for sustained economic growth. Unfortunately, oil prices and the need to import from politically unstable countries lowers the reliability of the U.S. energy supply and hinders economic development. Although biofuels have been identified as an important component of the national strategy to decrease U.S. dependence on imported oil, the ability to sustain a rapid expansion of biofuel production capacity raises new research and policy issues. This document seeks to identify the most critical of these issues to help inform the policy development process. The goal is to enhance the …

Plant Reproductive Allocation Predicts Herbivore Dynamics Across Spatial And Temporal Scales, Tom E. X. Miller, Andrew J. Tyre, Svata M. Louda

School of Biological Sciences: Faculty Publications

Life-history theory suggests that iteroparous plants should be flexible in their allocation of resources toward growth and reproduction. Such plasticity could have consequences for herbivores that prefer or specialize on vegetative versus reproductive structures. To test this prediction, we studied the response of the cactus bug (Narnia pallidicornis) to meristem allocation by tree cholla cactus (Opuntia imbricata). We evaluated the explanatory power of demographic models that incorporated variation in cactus relative reproductive effort (RRE; the proportion of meristems allocated toward reproduction). Field data provided strong support for a single model that defined herbivore fecundity as a …

Microbial Content Of Abattoir Wastewater And Its Contaminated Soil In Lagos, Nigeria, A. O. Adesemoye, B. O. Opere, S. C. O. Makinde

Department of Plant Pathology: Faculty Publications

Microbial content of wastewater in two abattoirs and the impact on microbial population of receiving soil was studied in Agege and Ojo Local Government Areas in Lagos State, Nigeria. Wastewater samples were collected from each of the abattoirs over three months period and examined for microbial content. Soil samples contaminated with the wastewaters were also collected and analyzed for microbial content as compared to soil without wastewater contamination in the neighborhood (control). Some physico-chemical parameters of the samples such as total dissolved solid, chemical oxygen demand, etc., were examined. The wastewater samples from both abattoirs were highly contaminated; Agege abattoir …

Center For Grassland Studies Newsletter, Fall 2006, Volume 12, No. 4

Center for Grassland Studies: Newsletters

Chemical Characteristics of Aging Golf Greens by Roch Gaussoin, Department of Agronomy and Horticulture, UNL

Can Ecophysiological Characteristics Explain the Success of Woody Species in the Sandhills of Nebraska? by Kathleen Eggemeyer, Tala Awada, F. Edwin Harvey, David Wedin, Xinhua Zhou and Sue Ellen Pegg, School of Natural Resources, UNL

Comparison of a Long Yearling System to Calf-fed Performance and Economics by Will Griffin and Terry Klopfenstein, Department of Animal Science, UNL

A Tale of Two States by Jana Beckman, Kansas Center for Sustainable Agriculture and Alternative Crops, K-State Research and Extension

2006 Nebraska Grazing Conference Best Yet!

Lake Mead National Recreation Area Vegetation Monitoring And Management: Final Close-Out Report, Time Period: October 1, 2005 To September 30, 2006, Margaret N. Rees

Vegetation Monitoring

The National Park Service (NPS) at Lake Mead National Recreation Area (LAME) entered into a cooperative agreement with the University of Nevada, Las Vegas (UNLV) to accomplish vegetation monitoring and management activities. This report summarizes activities that took place by UNLV under this task agreement between October 1, 2005, and September 30, 2006. The activities included:

• Weed Sentry mapping and treating incipient populations of exotic invasive plants throughout Clark County, including along shorelines of Lakes Mead and Mohave;
• Monitoring of targeted rare native plant species;
• Sahara mustard research; and
• Providing technical assistance upon request to the NPS vegetation manager.

In …

Intsormil Crsp: Sorghum, Millet And Other Grains Collaborative Research Support Program: Leader With Associates Cooperative Agreement No. Eep-A-00-06-0016-00; Award From The U.S. Agency For International Development To The University Of Nebraska-Lincoln, Joseph Schmidt

INTSORMIL Scientific Publications

Pursuant to the authority contained in the Foreign Assistance Act of 1961, as amended, the U.S. Agency for International Development (USAID) hereby awards to University of Nebraska - Lincoln (hereinafter referred to as the "Recipient"), the sum of $9,000,000.00 to provide support for a program in Sorghum, Millet, and Other Grains Collaborative Research Support Program as described in the Schedule of this award and in Attachment B, entitled "Program Description."

This Leader with Associates Cooperative Agreement is effective and obligation is made as of 09-30-2006 and shall apply to expenditures made by the Recipient in furtherance of program objectives during …

Ecophysiology Of Two Native Invasive Woody Species And Two Dominant Warm-Season Grasses In The Semiarid Grasslands Of The Nebraska Sandhills, Kathleen D. Eggemeyer, Tala Awada, David A. Wedin, F. Edwin Harvey, Xinhua Zhou

School of Natural Resources: Faculty Publications

Populations of Pinus ponderosa and Juniperus virginiana are expanding into semiarid Sandhills grasslands in Nebraska. To evaluate the physiological basis of their success, we measured the seasonal course of leaf gas exchange, plant water status, and carbon isotope discrimination in these two native trees and two native C₄ grasses (Schizachyrium scoparium and Panicum virgatum). Compared to the trees, grasses had higher net photosynthetic rates (A_net) and water use efficiency (WUE) and more negative predawn and midday water potentials (Ψ) in June and July. While leaf Ψ and rates of leaf gas exchange declined for all …

Nitrate Accumulation And Movement Under Deficit Irrigation In Soil Receiving Cattle Manure And Commercial Fertilizer, D. D. Tarkalson, J. O. Payero, S. M. Ensley, Charles A. Shapiro

Department of Agronomy and Horticulture: Faculty Publications

Nitrate leaching from agricultural soils can increase groundwater nitrate concentrations. The objectives of the study were to assess the accumulation and movement of nitrate in the soil profile over a 2-year period under def¬icit irrigation conditions following a one time application of N in cattle feedlot manure and commercial fertilizer to corn at rates to achieve yield goals expected under conditions of full irrigation. Cattle manure and ammonium nitrate were applied in 2002 at the University of Nebraska recommended rate (1M and 1F, respectively) and cat¬tle manure was applied at twice the recommended rate (2M) for N for the 2002 …

Nebline, September 2006

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

4-H Partners With Lincoln After-School Programs
After-School Youth Participate in County Fair 4-H Activities
Free E-mail Horticulture Newsletter
Storing Vegetables and Fruit
Too Late to Spray Bagworms
Deep Watering in Fall Can Prevent Tree Death
A Clean Garden This Fall Means A Disease-Free Garden Next Spring
Take Precautions To Avoid Serious Injury When Operating ATVs
Stocking Up on MyPyramid- Style After-School Snacks
Fruit Muesli Recipe
$tretch Your Food Dollars with Beans
President’s Notes — Alice’s Analysis
Household Hints: Stain Removal Tips
Fall Maintenance
FCE News & Events
Starting the “New Year” Out Right
Chemical Control of Eastern Redcedar
Eastern Nebraska …

The Evolution Of Organismal Complexity In Angiosperms As Measured By The Information Content Of Taxonomic Descriptions, J. Gordon Burleigh, Justen B. Whittall, Michael J. Sanderson

Biology

We describe an information theoretic method for measuring relative organismal complexity. The complexity measure is based on the amount of information contained in formal taxonomic descriptions of organisms. We examine the utility of this measure for quantifying the complexity of plant families. The descriptions are subjective by nature, but we find a significant correlation in the complexity values of plant families from two independently authored sets of formal taxonomic descriptions. An analysis of the evolution of complexity across angiosperms found evidence of a pattern of increasing complexity. Our measure of complexity provides an operational definition of complexity that may be …

Artificial Burrows And The Deer Mouse: Do Number Of Entrances Influence Use?, Glennis A. Kaufman, Donald W. Kaufman

The Prairie Naturalist

We examined use of artificial burrows by the deer mouse (Peromyscus maniculatus) in mixed grass prairie in north central Kansas. We predicted differential use of burrows, such that the deer mouse would prefer two entrance burrows in non-winter months when predatory snakes were active, but prefer one entrance burrows in winter when cold, windy conditions existed. We installed 20 pairs of artificial burrows (one single entrance and one double entrance) in summer 1988. We examined these burrows on seven dates from autumn 1988 to autumn 1989. All mice (n = 70) used two entrance burrows at least …

First Record Of The Least Shrew In Wyoming; And Clostridium Perfingens Type A Enterotoxemia In A Captive Adult White-Tailed Deer, Shauna R. Marquardt, Brian C. Bartels, Cheryl A. Schmidt, Joshua A. Delger, Kevin L. Monteith, Jonathan A. Jenks

The Prairie Naturalist

First Record of the Leaast Shrew in Wyoming by Shauna R. Marquardt, Brian C. Bartels, and Cheryl A. Schmidt; and Clostridium perfingens Type A Enterotoxemia in a Captive Adult White-tailed Deer by Joshua A. Delger , Kevin L. Monteith, and Jonathan A. Jenks.

Habitat Characteristics Of Spring Blackbird Roosts In East-Central South Dakota, H. Jeffrey Homan, Richard S. Sawin, George M. Linz, William J. Bleier

The Prairie Naturalist

In the northern Great Plains, blackbirds (Icteridae) roost almost exclusively in emergent-dominated wetlands. The physical characteristics of wetland roosts are not well understood. From March 20 to April 20, 1999, we studied 16 wetlands used as blackbird roosts in east-central South Dakota. Six wetlands had major roosts (range: 102,000-298,000 blackbirds); whereas, 10 wetlands had minor roosts (range: 2,010-34,000 blackbirds). Maximum roost size was correlated directly with emergent vegetation area (P = 0.05) and possibly with wetland basin area (P ≤ 0.10). Water depths were greater at used sites within wetlands of major roosts (median = 44 cm) than …

The Prairie Naturalist, Volume 38, Number 3, September 2006, Elmer J. Finck, Hilary Gillock

The Prairie Naturalist

The Prairie Naturalist (September 2006) 38(3)

Editor: Elmer J. Finck

Assistant editor: Hilary Gillock

Great Plains Natural Science Society

Artificial Burrows and the Deer Mouse: Do Number of Entrances Influence Use? GLENNIS A. KAUFMAN1 and DONALD W. KAUFMAN, pages 145-154

Evaluating Genetic Viability of Pronghorn in Wind Cave National Park JONATHAN A. JENKSi , CHRISTOPHER N. JACQUES, JARET D. SIEVERS, ROBERT W. KLAVER, R. TERRY BOWYER, and DANIEL E. RODDY, pages 155-165

Age Structure and Reproductive Activity of the Blue Sucker in the Milk River, Missouri River Drainage, Montana JULIE BEDNARSKl1 and DENNIS L. SCARNECCHIA, pages 167-182

Habitat Characteristics of …

Reviews: Natural History Of Javelinas; And Three Dvds On Bats, Louis A. Harveson, Jean Legge

The Prairie Naturalist

Reviews of Javelinas: Collared Peccaries of the Southwest (2006) by Jane Manaster, Texas Tech University Press, Lubbock, Texas, 85 pages (review by Louis A. Harveson) and of The Secret World of Bats (DVD), Building Homes for Bats (DVD), and Kids Discover Bats (DVD) (2005) published by Bat Conservation International (review by Jean Legge).

Cloning Of Nt.Cviqii Nicking Endonuclease And Its Cognate Methyltransferase: M.Cviqii Methylates Ag Sequence, Siu-Hong Chan, Zhenyu Zhu, David Dunigan, James L. Van Etten, Shuang-Yong Xu

Department of Plant Pathology: Faculty Publications

Chlorella virus NY-2A has a large, highly methylated dsDNA genome (45% of the cytosines are 5-methylcytosine and 37% of the adenines are N⁶-methyladenine). Here, we report the cloning, expression, and characterization of the NY-2A-encoded CviQII nicking-modification (N-M) system. The nicking endonuclease, Nt.CviQII, recognizes R ↓ AG (R = A or G, ↓ indicating cleavage site) sequences and cleaves the phosphodiester bond 5′ to the adenosine. Because of the difficulty in cloning and expressing the wild-type Nt.CviQII, C-terminal truncation mutants were generated and full-length Nt.CviQII was reconstructed by intein-mediated peptide ligation. The truncation mutants and the reconstructed full-length Nt.CviQII …

Pseudomonas SyringaeHrpj Is A Type Iii Secreted Protein That Is Required For Plant Pathogenesis, Injection Of Effectors,And Secretion Of The Hrpz1 Harpin, Zheng Qing Fu, Ming Guo, James R. Alfano

Center for Plant Science Innovation: Faculty Publications

The bacterial plant pathogen Pseudomonas syringae requires a type III protein secretion system (TTSS) to cause disease. The P. syringae TTSS is encoded by the hrp-hrc gene cluster. One of the genes within this cluster, hrpJ, encodes a protein with weak similarity to YopN, a type III secreted protein from the animal pathogenic Yersinia species. Here, we show that HrpJ is secreted in culture and translocated into plant cells by the P. syringae pv. tomato DC3000 TTSS. A DC3000 hrpJ mutant, UNL140, was greatly reduced in its ability to cause disease symptoms and multiply in Arabidopsis thaliana …

Biologic Cycling Of Silica Across A Grassland Bioclimosequence, S. W. Blecker, Rebecca L. Mcculley, O. A. Chadwick, E. F. Kelly

Plant and Soil Sciences Faculty Publications

The dynamics of biologic Si cycling in grassland ecosystems are largely unknown and likely to impact mineral weathering rates regionally and diatom productivity globally; key regulatory processes in the global Si cycle are closely tied to the global carbon cycle. Across a bioclimatic sequence spanning major grassland ecosystems in the Great Plains, soil biogenic silica depth distributions are similar to that of soil organic carbon; however, unlike soil organic carbon, quantities of soil biogenic silica decrease with increasing precipitation, despite an increase in annual biogenic inputs through litterfall across the same gradient. Though comprising only 1–3% of the total Si …

Inducible Yeast System For Viral Rna Recombination Reveals Requirement For An Rna Replication Signal On Both Parental Rnas, Hernan Garcia-Ruiz, Paul Ahlquist

Department of Plant Pathology: Faculty Publications

To facilitate RNA recombination studies, we tested whether Saccharomyces cerevisiae, which supports brome mosaic virus (BMV) replication, also supports BMV RNA recombination. Yeast strains expressing BMV RNA replication proteins 1a and 2a^pol were engineered to transiently coexpress two independently inducible, overlapping, nonreplicating derivatives of BMV genomic RNA3. B33' lacked the coat protein gene and negative-strand RNA promoter. B35' lacked the positive-strand RNA promoter and had the coat gene replaced by the selectable URA3 gene. After 12 to 72 h of induction, B33' and B35' transcription was repressed and Ura⁺ yeast cells were selected. All Ura⁺ cells …

Latex Of Sciadopitys Verticillata (Thunb.) Siebold And Zuccarini: Antibiotic Properties, Phytochemistry, And Inhibition Of Adventitious Rooting Of Stem Cuttings., David Ira Yates

Electronic Theses and Dissertations

Sciadopitys verticillata was subjected to three propagation treatments designed to inhibit coagulation of its latex-like sap at the cut ends of the stem cuttings. Twenty-four hour soaking in water prior to rooting hormone application significantly enhanced production of adventitious roots. Old wood stem cuttings from shade-grown trees rooted at higher proportions than stem cuttings collected from sun-grown trees. Height, age, and place of origin of the source trees were not important factors in successful rooting. Antibacterial activity against some human pathogens and soil bacterial species was detected in latex application trials but the antibiotic activity was not related to the …

Nebraska Vine Lines, Volume Viii, Issue 3. August/September 2006.

Nebraska Vine Lines (2003–2006)

• Novemer 11th Workshop: Focuses on New Cultivars

• WOW! It’s Been a Hot One.

• Faculty Development Leave — Part II

• A NEW TASTING ROOM IN RAVENNA

• SUMMER FIELD DAY OPPORTUNITIES

• NWGGA Grant-Funded Field Days

• REAMS SPRINKLER SUPPLY

• Three New Wine Grapes from Cornell

• Wine Doggie Bag—LB 388 (Supported)

Frozen Beetle Treats Are Environmentally Friendly, W. John Hayden

Biology Faculty Publications

At my rural household, the most vexatious insect pest has got to be the ubiquitous Japanese beetle. Native to Japan, these pests have infested most of eastern North America, with isolated infestations appearing in some western states. One reason that Japanese beetles are so bad is that they deliver a double-whammy: the larvae (grubs) consume roots and are particularly destructive of turf and pasture grasses while the adults consume leaves and flowers of a wide variety of plants, leaving behind skeletonized versions of the plant parts consumed.

Isolation Of An Active Lv1 Gene From Cattle Indicates That Tripartite Motif Protein-Mediated Innate Immunity To Retroviral Infection Is Widespread Among Mammals, Laura M.J. Ylinen, Zuzana Keckesova, Benjamin L.J. Webb, Robert J.M. Gifford, Timothy P.L. Smith, Greg J. Towers

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Lv1/TRIM5α (tripartite motif 5α) has recently emerged as an important factor influencing species-specific permissivity to retroviral infection in a range of primates, including humans. Old World monkey TRIM5α blocks human immunodeficiency virus type 1 (HIV-1) infectivity, and the human and New World monkey TRIM5α proteins are inactive against HIV-1 but active against divergent murine (N-tropic murine leukemia virus [MLV-N]) and simian (simian immunodeficiency virus from rhesus macaque [SIVmac]) retroviruses, respectively. Here we demonstrate antiviral activity of the first nonprimate TRIM protein, from cattle, active against divergent retroviruses, including HIV-1. The number of closely related human TRIM sequences makes assignment of …

Notes On Invasive Plants In The Rio Grande Delta Of Cameron County, Texas., Robert I. Lonard, Frank W. Judd

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

No abstract provided.

Genetics And Inheritance Of Seed Dormancy Inflicted By Seed- Coat Factors In Rice (Oryza Sativa L.), Z. L. Kanyeka

Tanzania Journal of Science

The study was undertaken to investigate the genetic mode of inheritance of dormancy imposed by the hull (seed coat) in rice seeds. Freshly harvested seeds of parents, F1 and F2 populations of a cross between a dormant cultivar Kisegese and non-dormant strain K2004 were used. Germination test of the de-hulled (without seed coat) and un-dehulled (whole or with seed coat) seeds were conducted at 10 days intervals starting at 15 days after harvesting (15DAH) for 65 days. The seeds were sown in petri dishes. Numbers of germinated and un-germinated seeds were recorded at 7 days after sowing. Germination of seeds …