Digital Commons Network^™

Mycotoxin Occurrence And Aspergillus Flavus Soil Propagules In A Corn And Cotton Glyphosate-Resistant Cropping Systems, K. N. Reddy, H. K. Abbas, R. M. Zablotowicz, C. A. Abel, C. H. Koger

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The effects of cotton–corn rotation and glyphosate use on levels of soil-borne Aspergillus flavus, aflatoxin and fumonisin contamination in corn and cotton seed were determined during 2002–2005 in Stoneville, Mississippi (USA). There were four rotation systems (continuous cotton, continuous corn, cotton–corn and corn–cotton) for both glyphosate-resistant (GR) and non-GR cultivars–herbicide system arranged in a randomized complete block design with four replications. Aspergillus flavus populations in surface (5-cm depth) soil, sampled before planting (March/April), mid-season (June) and after harvest (September), ranged from 1.47 to 2.99 log (10) cfu g^-1 soil in the four rotation systems. Propagules of A. flavus …

First Report Of Yersinia Ruckeri Biotype 2 In The Usa, Cova R. Arias, Oscar Olivares-Fuster, Karl Hayden, Craig A. Shoemaker, John M. Grizzle, Phillip H. Klesius

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

A polyphasic characterization of atypical isolates of Yersinia ruckeri (causative agent of enteric redmouth disease in trout) obtained from hatchery-reared brown trout Salmo trutta in South Carolina was performed. The Y. ruckeri isolates were biochemically and genetically distinct from reference cultures, including the type strain, but were unequivocally ascribed to the species Y. ruckeri, based on API 20E, VITEK, fatty acid methyl ester profiles, and 16S rRNA gene sequencing analysis. These isolates were nonmotile and unable to hydrolyze Tween 20/80 and were therefore classified as Y. ruckeri biotype 2. Genetic fingerprint typing of the isolates via enterobacterial repetitive intergenic …

Mineralization Of Nitrogen In Soils Amended With Dairy Manure As Affected By Wetting/Drying Cycles, D. B. Watts, H. A. Torbert, S. A. Prior

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Interest in manure management and its effects on nitrogen (N) mineralization has increased in recent years. The focus of this research was to investigate the N-mineralization rates of different soil types in Coastal Plain soils and compare them to a soil from Illinois. Soils with and without dairy composted manure addition were subjected to different wetting/drying cycles [constant moisture at 60% waterfilled pore space (WFPS) and cycling moisture from 60 to 30% WFPS] under laboratory conditions at three different temperatures (11 °C, 18 °C, and 25 °C). Samples were collected from three different soil types: Catlin (Mollisols), Bama (Ultisols), and …

Non-Composted Municipal Solid Waste Processing Byproduct Effect On Soil Reclamation, H. Allen Torbert, Dick L. Gebhart, Ryan R. Busby, Kenneth N. Potter, Deborah R. Curtain

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

A new garbage processing technology has been developed that sterilizes and separates inorganic and organic components of municipal solid waste. The non-composted byproduct of this process, Fluff ®, has the potential to be utilized as a soil amendment to improve soil conditions in highly degraded soils. A study was initiated to evaluate Fluff as a soil amendment for establishing native grasses on disturbed US Army training lands. The Fluff was incorporated into a sandy loam soil at Fort Benning Military Reservation, GA on two sites: a moderately degraded and a highly degraded soil. The Fluff was incorporated at rates of …

Alkaline Phosphatase Reactivity In The Vagina And Uterovaginal Junctionsperm-Storage Tubules Of Turkeys In Egg Production: Implications Forsperm Storage, M. R. Bakst, V. Akuffo

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

1. Currently there remains contradictory intortliation on the localisation and possible roleof alkaline phosphatase (AP) in the chicken and Japanese quail oviducts.

2.Using turkeys with a hard-shelled egg in their uteri, vaginal and uterovaginal junction mucosae werestretched and fixed as whole mounts prior to the Imistochemical localisation of All activity.

3.Scattered All reactive cells were observed in the vaginal and uteiovaginal junction surface epitheliaand intense All reactivity of the sperm-storage tubule (SST) epithelium, localised to its apical border.

4.We suggest that such All in hens in egg production may reflect cell dif.ftreiitiation andproliferation in the vagina and SST and possibly …

Adrenomedullin (Am) And Adrenomedullin Binding Protein (Am-Bp) In The Bovine Mammary Gland And Milk: Effects Of Stage Of Lactation And Experimental Intramammary E. Coli Infection, Ted H. Elsasser, Anthony V. Capuco, Thomas J. Caperna, Alfredo Martínez, Frank Cuttitta, Stanislaw Kahl

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Adrenomedullin (AM) has been characterized as an endogenous tissue survival factor and modulator of many inflammatory processes. Because of the increased susceptibility of the mammary gland to infection during the time surrounding parturition in the cow, we investigated how milk and tissue content of AM and its binding protein (AM-BP) might be affected by the stage of lactation and the udder health status. Milk and mammary biopsy samples were obtained from Holstein cows 21 days prior to and at various times after calving to represent the dry period and early and midstages of lactation. Additional cows received an intramammary challenge …

Identification And Characterization Of Aquaporin-9 (Aqp9) In Porcine Hepatic Tissue And Hepatocytes In Monolayer Culture, Thomas J. Caperna, Amy E. Shannon, Mark P. Richards, Wesley M. Garrett, Neil C. Talbot

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Aquaporins (AQPs) are members of a large family of integral membrane proteins involved in the rapid movement of water and neutral solutes across cell membranes. In this study, we have prepared an affinity-purified porcine-specific polyclonal antiserum to AQP9 and have investigated the distribution and expression of AQP9 in pig liver tissue and in hepatocytes in primary culture. Immunocytochemical analysis showed that AQP9 was primarily localized in the membrane structures of hepatocytes and was not associated with intrahepatic bile ducts or blood vessels. Western blot analysis indicated that AQP9 ranged in apparent molecular mass between 27 and 38 kD in whole …

Isolation And Characterization Of Porcine Visceral Endoderm Cell Lines Derived From In Vivo 11-Day Blastocysts, Neil C. Talbot, Le Ann Blomberg, Ayesha Mahmood, Thomas J. Caperna, Wesley M. Garrett

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Two porcine cell lines of yolk-sac visceral endoderm, designated as PE-1 and PE-2, were derived from in vivo 11-d porcine blastocysts that were either ovoid (PE-1) or at the early tubular stage of elongation (PE-2). Primary and secondary culture of the cell lines was done on STO feeder cells. The PE-1 and PE-2 cells morphologically resembled visceral endoderm previously cultured from in vivo-derived ovine and equine blastocysts and from in vitro-derived bovine blastocysts. Analysis of the PE-1- and PE-2-conditioned medium by 2D-gel electrophoresis and matrix-assisted laser desorption/ionization-time-of-flightmass spectrometry demonstrated that they produced serum proteins. Reverse transcriptase polymerase chain …

Proteomic And Genetic Analysis Of Glycinin Subunits Of Sixteen Soybean Genotypes, Savithiry Natarajan, Chenping Xu, Hanhong Bae, Bryan A. Bailey, Perry Cregan, Thomas J. Caperna, Wesley M. Garrett, Devanand Luthria

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

We investigated proteomic and genomic profiles of glycinin, a family of major storage proteins in 16 different soybean genotypes consisting of four groups including wild soybean (Glycine soja), unimproved cultivated soybean landraces from Asia (G. max), ancestors of N. American soybean (G. max), and modern soybean (G. max) genotypes. We observed considerable variation in all five glycinin subunits, G1, G2 G3, G4 and G5 using proteomics and genetic analysis. Two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) and mass spectrometry (MS) analysis showed that the wild genotypes had a range of 25-29 glycinin protein spots that included …

Characterization Of Biological Types Of Cattle (Cycle Vii): Influence Of Postpartum Interval And Estrous Cycle Length On Fertility, R. A. Cushman, M. F. Allan, R. M. Thallman, L. V. Cundiff

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Genetic improvement in reproductive efficiency through selection is difficult because many reproductive traits are binomial and have low heritabilities. Before genetic markers can be generated for fertility in cows, greater characterization of reproductive phenotypes is needed to understand the components of the trait. The current study tested the hypotheses that: 1) breeds vary in postpartum interval to estrus (PPIE) and estrous cycle length, 2) a longer estrous cycle immediately before breeding increased pregnancy rates, and 3) a greater number of cycles before breeding increased conception rates. The postpartum interval to estrus, estrous cycle length, and number of cycles before breeding …

Livestock Management During Drought In The Northern Great Plains. I. A Practical Predictor Of Annual Forage Production, R. E. Kruse, M. W. Tess, R. K. Heitschmidt

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

This research addressed the hypothesis that spring precipitation data can be used to detect agricultural drought early in the growing season. The Rangetek range model was used to simulate yearly forage data based on historical precipitation and temperature records from the USDA-ARS Fort Keogh Livestock and Range Research Laboratory (Miles City, MT) and the Agriculture and Agri-Food Canada Manyberries Substation (Lethbridge, AB, Canada). Monthly total precipitation and monthly average maximum and minimum temperatures were used to develop regression equations predicting growing season forage production at the Fort Keogh Laboratory and Manyberries Substation. At Fort Keogh Laboratory, a combination of fall …

Using Comparative Genomics To Reorder The Human Genome Sequence Into A Virtual Sheep Genome, Brian Dalrymple, Ewen Kirkness, Mikhail Nefedov, Sean Mcwilliam, Abhirami Ratnakumar, Wes Barris, Shaying Zhao, Jyoti Shetty, Jillian Maddox, Margaret O'Grady, Frank Nicholas, Allan Crawford, Tim Smith, Pieter De Jong, John Mcewan, V. Hutton Oddy, Noelle Cockett

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Background: Is it possible to construct an accurate and detailed subgene-level map of a genome using bacterial artificial chromosome (BAC) end sequences, a sparse marker map, and the sequences of other genomes?
Results: A sheep BAC library, CHORI-243, was constructed and the BAC end sequences were determined and mapped with high sensitivity and low specificity onto the frameworks of the human, dog, and cow genomes. To maximize genome coverage, the coordinates of all BAC end sequence hits to the cow and dog genomes were also converted to the equivalent human genome coordinates. The 84,624 sheep BACs (about 5.4-fold genome coverage) …

Construction And Characterization Of A Full-Length Cdna Library For The Wheat Stripe Rust Pathogen, Peng Ling, Meinan Wang, Xianming Chen, Kimberly A. Garland-Campbell

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Puccinia striiformis is a plant pathogenic fungus causing stripe rust, one of the most important diseases on cereal crops and grasses worldwide. However, little is know about its genome and genes involved in the biology and pathogenicity of the pathogen. We initiated the functional genomic research of the fungus by constructing a full-length cDNA and determined functions of the first group of genes by sequence comparison of cDNA clones to genes reported in other fungi.

Dominant Species Constrain Effects Of Species Diversity On Temporal Variability In Biomass Production Of Tallgrass Prairie, H. Wayne Polley, Brian J. Wilsey, Justin D. Derner

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Species diversity is thought to stabilize functioning of plant communities. An alternative view is that stability depends more on dynamics of dominant species than on diversity. We compared inter-annual variability (inverse of stability) of aboveground biomass in paired restored and remnant tallgrass prairies at two locations in central Texas, USA. Data from these two locations were used to test the hypothesis that greater richness and evenness in remnant than restored prairies would reduce variability in aboveground biomass in response to natural variation in rainfall. Restored prairies were chosen to be similar to paired remnant prairies in characteristics other than species …

Nitrogen Contribution Of Peanut Residue To Cotton In A Conservation Tillage System, B. Meso, K. S. Balkcom, C. W. Wood, J. F. Adams

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Leguminous crops, particularly winter annuals, have been utilized in conservation systems to partially meet nitrogen (N) requirements of succeeding summer cash crops. Previous research also highlights the benefits of utilizing summer annual legumes in rotation with non-leguminous crops. This study assessed the N contribution of peanut (Arachis hypogaea L.) residues to a subsequent cotton (Gossypium hirsitum L.) crop in a conservation system on a Dothan sandy loam (fine-loamy, kaolinitic, thermic Plinthic Kandiudults) at Headland, AL during the 2003–2005 growing seasons. Treatments were arranged in a split plot design, with main plots of peanut residue retained or removed from …

Influence Of Soil Moisture On Root Colonization Of Glyphosate-Treated Soybean By Fusarium Species, Nathan E. Means, Robert J. Kremer

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The widespread use of glyphosate-resistant (GR) cropping systems may impact rhizosphere microbial associations and crop productivity. It was previously reported that glyphosate accumulation in the rhizosphere may stimulate colonization of soybean [Glycine max (L.) Merr.] roots by soilborne Fusarium. Field studies often reveal inconsistent root colonization by Fusarium, especially during growing seasons characterized by contrasting rainfall patterns. Therefore, this study was conducted to determine the impact of different soil moisture contents on root colonization of glyphosate-treated soybean by Fusarium species. Glyphosate (0.84 kg ae ha^-1) was applied to greenhouse-grown glyphosate-resistant (GR) soybean at the two to …

Genetic Diversity In Populations Of Xanthomonas Campestris Pv. Campestris In Cruciferous Weeds In Central Coastal California, A. Ignatov, A. Sechler, E. L. Schuenzel, I. Agarkova, B. Oliver, A. K. Vidaver, N. W. Schaad

Department of Plant Pathology: Faculty Publications

Xanthomonas campestris pv. campestris (X. campestris) infects a large number of cruciferous plants, including weeds. California has one of the largest and most diverse populations of wild cruciferous plants in the world. Although considerable information is available on the genetic diversity of X. campestris in commercial crop plants, nothing is known about the diversity in strains infecting weeds. To assess the genetic diversity among strains of X. campestris in weeds in noncultivated and cultivated areas, strains of the pathogen were isolated from populations of cruciferous weeds growing in coastal valley crop-production sites and from remote nonproduction sites along the …

Expression Analysis Of Rice Defense-Related Genes In Turfgrass In Response To Magnaporthe Grisea, Young-Ki Jo, Guo-Liang Wang, Michael J. Boehm

Department of Plant Pathology: Faculty Publications

Magnaporthe grisea (anamorph = Pyricularia grisea) causes blast on rice (Oryza sativa) and gray leaf spot on turfgrass. Gray leaf spot is a serious disease on St. Augustinegrass (Stenotaphrum secundatum), perennial ryegrass (Lolium perenne), and tall fescue (Festuca arundinacea). Virulence assays performed in this study revealed that M. grisea collected from rice could also cause disease on St. Augustinegrass and tall fescue. One rice isolate, Che86061, caused similar disease reactions on susceptible cultivars of rice and St. Augustinegrass and an incompatible interaction on resistant cultivars of both species. To explore whether …

Climate Change, Biofuels, And Global Food Security, Kenneth G. Cassman

Department of Agronomy and Horticulture: Faculty Publications

There is a new urgency to improve the accuracy of predicting climate change impact on crop yields because the balance between food supply and demand is shifting abruptly from surplus to deficit. This reversal is being driven by a rapid rise in petroleum prices and, in response, a massive global expansion of biofuel production from maize, oilseed, and sugar crops. Soon the price of these commodities will be determined by their value as feedstock for biofuel rather than their importance as human food or livestock feed [1]. The expectation that petroleum prices will remain high and supportive government policies in …

A Dialogue On Interdisciplinary Collaboration To Bridge The Gap Between Plant Genomics And Crop Sciences, P. C. Struik, Kenneth G. Cassman, M. Koornneef

Department of Agronomy and Horticulture: Faculty Publications

In the future, more food needs to be produced with increasingly scarce natural resources. Genomics can play a key role in accelerating yield gains because it helps to improve our understanding of genetic traits and assists in breeding for better crop performance. The scientific muscle of genomics attracted tremendous research investments, but the efficiency with which these investments are paying off is still low. How can we accelerate the application of molecular genetics to our understanding of crop physiology and subsequently to crop improvement? The missing link is a more detailed understanding of the effects of gene function on crop …

Grassland Composition Affects Season Shifts In Seed Preference By Pogonomyrmex Barbatus (Hymenoptera: Myrmicinae) In The Edwards Plateau, Texas, Nancy Nicolai, Jerry L. Cook, Fred E. Smeins

Department of Agronomy and Horticulture: Faculty Publications

The effects of season and community composition as generated by livestock herbivory of differing intensity on seed species preference by Pogonomyrmex barbatus (F. Smith) were studied in a semiarid savanna on the Edward’s Plateau, TX. Seasonal differences in nutrient requirements of the colony could lead to differential preferences for seeds harvested in spring and fall. Field cafeteria studies were conducted to test the hypothesis that late successional species, with their high nutrient content, would be chosen regardless of grazing intensity or season. Commercial seeds of known nutrient content were used to test the hypothesis that high protein levels would be …

Nbs1 Mediates Atr-Dependent Rpa Hyperphosphorylation Following Replication-Fork Stall And Collapse, Karoline C. Manthey, Stephen Opiyo, Jason G. Glanzer, Diana Dimitrova, James Elliott, Gregory G. Oakley

Department of Agronomy and Horticulture: Faculty Publications

Post-translational phosphorylation of proteins provides a mechanism for cells to switch on or off many diverse processes, including responses to replication stress. Replication-stress-induced phosphorylation enables the rapid activation of numerous proteins involved in DNA replication, DNA repair and cell cycle checkpoints, including replication protein A (RPA). Here, we report that hydroxyurea (HU)-induced RPA phosphorylation requires both NBS1 (NBN) and NBS1 phosphorylation. Transfection of both phosphospecific and nonphosphospecific anti-NBS1 antibodies blocked hyperphosphorylation of RPA in HeLa cells. Nijmegen breakage syndrome (NBS) cells stably transfected with an empty vector or with S343A-NBS1 or S278A/S343A phospho-mutants were unable to hyperphosphorylate RPA in DNA-damage-associated …

Simulation Study Of The Competitive Ability Of Erect, Semi-Erect, And Prostrate Cowpea (Vigna Unguiculata) Genotypes, G. Wang, M. E. Mcgiffen Jr., John L. Lindquist, J. D. Ehlers, I. Sartorato

Department of Agronomy and Horticulture: Faculty Publications

Ecophysiological simulation models provide a quantitative method to predict the effects of management practices, plant characteristics, and environmental factors on crop and weed growth and competition. The INTERCOM interplant competition model was parameterized, calibrated by monoculture data for three cowpea (Vigna unguiculata) genotypes that differed in growth habit, common sunflower (Helianthus annuus) and common purslane (Portulaca oleracea), and used to simulate competition of cowpea cover crops with sunflower or purslane. The simulation results were compared with observations from field competition experiments in 2003 and 2004. INTERCOM more accurately simulated actual field data for the …

Cell Wall Proteome In The Maize Primary Root Elongation Zone. Ii. Region-Specific Changes In Water Soluble And Lightly Ionically Bound Proteins Under Water Deficit1[W][Oa], Jinming Zhu, Sophie Alvarez, Ellen L. Marsh, Mary E. Lenoble, In-Jeong Cho, Mayandi Sivaguru, Sixue Chen, Henry T. Nguyen, Yajun Wu, Daniel P. Schachtman, Robert E. Sharp

Department of Agronomy and Horticulture: Faculty Publications

Previous work on the adaptation of maize (Zea mays) primary roots to water deficit showed that cell elongation is maintained preferentially toward the apex, and that this response involves modification of cell wall extension properties. To gain a comprehensive understanding of how cell wall protein (CWP) composition changes in association with the differential growth responses to water deficit in different regions of the elongation zone, a proteomics approach was used to examine water soluble and loosely ionically bound CWPs. The results revealed major and predominantly region-specific changes in protein profiles between well-watered and water-stressed roots. In total, 152 …

Map Location Of The Rpp1 Locus That Confers Resistance To Soybean Rust In Soybean, D. L. Hyten, G. L. Hartman, R. L. Nelson, R. D. Frederick, V. C. Concibido, J. M. Narvel, P. B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

Soybean rust (SBR), caused by Phakopsora pachyrhizi, was first discovered in North America in 2004 and has the potential to become a major soybean [Glycine max (L.) Merr.] disease in the USA. Currently, four SBR resistance genes have been identifi ed but not mapped on the soybean genetic linkage map. One of these resistance genes is the Rpp1 gene, which is present in the soybean accession PI 200492. The availability of molecular markers associated with Rpp1 will permit marker-assisted selection and expedite the incorporation of this gene into U.S. cultivars. We compared simple sequence repeat (SSR) markers between …

Barcsoysnp23: A Panel Of 23 Selected Snps For Soybean Cultivar Identification, M. S. Yoon, Q.J. Song, I. Y. Choi, James E. Specht, D. L. Hyten, P. B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

This report describes a set of 23 informative SNPs (BARCSoySNP23) distributed on 19 of the 20 soybean linkage groups that can be used for soybean cultivar identification. Selection of the SNPs to include in this set was made based upon the information provided by each SNP for distinguishing a diverse set of soybean genotypes as well as the linkage map position of each SNP. The genotypes included the ancestors of North American cultivars, modern North American cultivars and a group of Korean cultivars. The procedure used to identify this subset of highly informative SNP markers resulted in a significant increase …

Ethylene Involvement In The Regulation Of The H+-Atpase Csha1 Gene And Of The New Isolated Ferric Reductase Csfro1 And Iron Transporter Csirt1 Genes In Cucumber Plants, Brian M. Waters, Carlos Lucena, Francisco J. Romera, Gena G. Jester, April N. Wynn, Carmen L. Rojas, Esteban Alcántara, Rafael Pérez-Vicente

Department of Agronomy and Horticulture: Faculty Publications

In previous works using ethylene inhibitors and precursors, it has been shown that ethylene participates in the regulation of several Fe-deficiency stress responses by Strategy I plants, such as enhanced ferric reductase activity, rhizosphere acidification, and subapical root hair development. Furthermore, recent evidence suggests that ethylene could regulate the expression of both the ferric reductase and the iron transporter genes of Strategy I plants by affecting the FER (or FER-like) transcription factor. Recently, two H⁺-ATPase genes have been isolated from cucumber roots, CsHA1 and CsHA2. CsHA1 is up-regulated under Fe deficiency while CsHA2 is constitutively expressed. In …

Fertility Restoration Of The Sorghum A3 Male-Sterile Cytoplasm Through A Sporophytic Mechanism Derived From Sudangrass, Hoang V. Tang, Jeffrey F. Pedersen, Christine D. Chase, Daryl R. Pring

Department of Agronomy and Horticulture: Faculty Publications

Fertility restoration of sorghum [Sorghum bicolor (L.) Moench] lines carrying the IS1112C (A3 group) male-sterile cytoplasm has been documented as a two-gene gametophytic mechanism involving complementary action of restoring alleles designated Rf3 and Rf4, as derived from IS1112C. Fertility restoration capability has also been reported from sudangrass (S. bicolor subsp. drummondii) populations. We describe characteristics of a fertility restoration system derived from sudangrass, in which male-sterile individuals were observed at high frequency in backcross and F2-F3 segregating populations. Segregation analyses were consistent with a sporophytic restoration system involving two complementary genes. Pollen iodine staining in fertile …

Array-Based Genotyping And Expression Analysis Of Barley Cv. Maythorpe And Golden Promise, Harkamal Walia, Clyde Wilson, Pascal Condamine, Abdelbagi M. Ismail, Jin Xu, Xinping Cui, Timothy J. Close

Department of Agronomy and Horticulture: Faculty Publications

Background: Golden Promise is a salt-tolerant spring barley closely related to Maythorpe. Salt tolerance in Golden Promise has been attributed to a single mutation at the Ari-e locus (on 5H) resulting from irradiation of Maythorpe. Golden Promise accumulates lower shoot Na⁺ compared to Maythorpe when growing under saline conditions. This study focused on elucidating the genetic basis and mechanisms involved in this difference. Results: The level of polymorphism between the two genotypes was explored using the Barley1 GeneChip for single feature polymorphisms (SFPs) and an oligonucleotide pool assay for single nucleotide polymorphisms (SNPs). Polymorphism analyses revealed three haplotype blocks …

Genetic Analysis Of A Novel Alaska Barley Yellow Dwarf Virus In The Family Luteoviridae, N.L. Robertson, Roy C. French

Department of Plant Pathology: Faculty Publications

A new plant virus belonging to the family Luteoviridae and isolated from diseased oat (Avena sativa L.) plants was discovered in Alaska in 2003. Even though plants with red/orange leaves were indicative of barley yellow dwarf disease, they were not reactive to specific antibodies corresponding to barley yellow dwarf virus (BYDV)-MAV, -PAV, -SGV, and cereal yellow dwarf virus-RPV from enzyme-linked immunosorbent assays (ELISA). An alternative RT-PCR assay that incorporated Shu-F/Yan-R primers for detection of BYDV-MAV, -PAS, -PAV, and SGV was effective in producing ~830-nt fragments that contained genomic sequences to the 3’-terminus of the polymerase gene (ORF 2), the …