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Improving The Efficiency Of Fall Applied N With Cover Crops, Corey Lacey

Theses and Dissertations

Nitrate loss studies in Midwestern tile-drained fields have found that fall applied nitrogen (N) resulted in elevated nitrate concentrations in tile water during both the corn and soybean year of a 2 year rotation. The effectiveness of cover crops to reduce nitrate leaching when N is spring applied has been well demonstrated, however there is a dearth of knowledge on the ability of cover crops to reduce nitrate leaching in a system where N is fall applied. Thus, the objectives of this research were to (i) investigate the efficacy of winter cover crops to reduce nitrate leaching from fall applied …

Calmodulin-Mediated Signal Transduction Pathways In Arabidopsis Are Fine-Tuned By Methylation, Joydeep Banerjee, Roberta Magnani, Meera Nair, Lynnette M. Dirk, Seth Debolt, Indu B. Maiti, Robert L. Houtz

Department of Plant Pathology: Faculty Publications

Calmodulin N-methyltransferase (CaM KMT) is an evolutionarily conserved enzyme in eukaryotes that transfers three methyl groups to a highly conserved lysyl residue at position 115 in calmodulin (CaM). We sought to elucidate whether the methylation status of CaM plays a role in CaM-mediated signaling pathways by gene expression analyses of CaM KMT and phenotypic characterization of Arabidopsis thaliana lines wherein CaM KMT was overexpressed (OX), partially silenced, or knocked out. CaM KMT was expressed in discreet spatial and tissue-specific patterns, most notably in root tips, floral buds, stamens, apical meristems, and germinating seeds. Analysis of transgenic plants with genetic dysfunction …

Decomposition Patterns And Nitrogen Dynamics Of Black Mangrove (Avicennia Germinans)Leaf Litter In Disturbed Estuaries Linked To The Lower Laguna Madre, Texas, Mario Alberto Marquez

Theses and Dissertations - UTB/UTPA

Estuaries are among the most productive aquatic systems in the world but are subject to both anthropogenic and natural disturbances. With increasing environmental concerns, efforts have become commonplace in assessing the status and trends of environmental conditions. In this study, an assessment of ecosystem status of various estuaries affected by different disturbances, was attempted through the examination of key functional processes such as leaf litter decomposition and nutrient dynamics during decay. Three estuaries located along the Brownsville Ship Channel near the southern terminus of the Lower Laguna Madre in Texas were studied. The overlying goal of this study was to …

Botrytis Neck Rot Of Onion, Claudia Nischwitz

All Current Publications

No abstract provided.

Effect Of Mycorrhizal Colonization And Light Limitation On Growth And Reproduction Of Lima Bean (Phaseolus Lunatus L.), Daniel J. Ballhorn, Jess A. Millar

Biology Faculty Publications and Presentations

Plants can respond with sink stimulation of photosynthesis when colonized with fungal or bacterial root symbionts, compensating costs of carbohydrate allocation to the microbes. However, constraints may arise under light limitation when plants cannot extensively increase photosynthesis. We hypothesize that under such conditions the costs for maintaining the symbiosis outweigh the benefits, ultimately turning the mutualist microbes into parasites, resulting in reduced plant growth and reproduction.

Using lima bean (Phaseolus lunatus) as experimental plant, we applied two levels of light (full light, 75% shading) and microbial inoculation (sterile soil, mycorrhizal fungi) and quantified both vegetative and generative plant …

Quantitative Relationship Of Soil Texture With The Observed Population Density Reduction Of Heterodera Glycines After Annual Corn Rotation In Nebraska, Oscar Perez-Hernandez, Loren J. Giesler

Department of Plant Pathology: Faculty Publications

Soil texture has been commonly associated with the population density of Heterodera glycines (soybean cyst nematode: SCN), but such an association has been mainly described in terms of textural classes. In this study, multivariate analysis and a generalized linear modeling approach were used to elucidate the quantitative relationship of soil texture with the observed SCN population density reduction after annual corn rotation in Nebraska. Forty-five commercial production fields were sampled in 2009, 2010, and 2011 and SCN population density (eggs/100 cm3 of soil) for each field was determined before (Pi) and after (Pf) annual corn rotation from ten 3 3 …

The System I And System Iii Holocytochrome C Synthases In Cytochrome C Biogenesis, Brian San Francisco

All Theses and Dissertations (ETDs)

Cytochromes c are proteins that are involved in important redox reactions in organisms from every kingdom of life. C-type cytochromes, uniquely, possess a covalently bound heme. Since cytochromes c are assembled at their site(s) of function: outside of the cytoplasmic membrane in bacteria, in the chloroplast lumen, or in the mitochrondrial intermembrane space), their assembly poses unique challenges to heme trafficking and post translational modification. Three major systems exist in nature for cytochrome c assembly, termed systems I, II, and III. Using recombinant Escherichia coli, aspects of systems I and III were analyzed, with an emphasis on the synthase protein(s) …

Forward Genetic Screen Of Trichomes For Discovery Of Cytoskeleton-Based Mutants, Adam M. Fessenden, Samuel Belteton, Daniel B. Szymanski

The Summer Undergraduate Research Fellowship (SURF) Symposium

Understanding plant cell development and what genes influence cell growth can lead to breakthroughs in beneficial areas such as bioremediation, agricultural production, and biofuels. However, information on many of the genes that control plant cell growth is either unknown or severely limited. Further research to fully comprehend the genetic pathways within the cells will enable the genetic engineering of plants to further benefit society. One approach is the combined use of a forward genetic screen, sophisticated growth analysis, and gene identification. Using Arabidopsis thaliana trichomes, leaf hairs, as a model system, the mutagenized population of thousands of plants was screened …

Development Of A Metabolomic Method To Define The Phenylalanome In Arabidopsis Thaliana, Cole G. Wunderlich, Clint Chapple, Xu Li

The Summer Undergraduate Research Fellowship (SURF) Symposium

In the study of metabolomics, one of the greatest challenges can be accurately identifying compounds detected in biological extracts, especially when standards are not readily available. Current metabolomic methods are also limited in that they provide little to no information about a compound’s metabolic origin. In this study, we sought to address these issues by developing a novel metabolomic method that employs stable isotope feeding, LC-MS, Xcms, and an analytical software algorithm to study the ‘phenylalanome’ of Arabidopsis thaliana. Using this approach we were able to develop a method that, based on current results, is capable of detecting over …

Streptomycin Resistance Of Erwinia Amylovora Isolated From Apple (Malus Domesticus) In Utah, Claudia Nischwitz

All Current Publications

No abstract provided.

Diffuse Migratory Connectivity In Two Species Of Shrubland Birds: Evidence From Stable Isotopes, Steven T. Knick, Matthias Leu, John T. Rotenberry, Steven E. Hanser, Kurt A. Fesenmyer

Articles

Connecting seasonal ranges of migratory birds is important for understanding the annual template of stressors that influence their populations. Brewer’s sparrows (Spizella breweri) and sagebrush sparrows (Artemisiospiza nevadensis) share similar sagebrush (Artemisia spp.) habitats for breeding but have different population trends that might be related to winter location. To link breeding and winter ranges, we created isoscapes of deuterium [stable isotope ratio (δ) of deuterium; δ ²H] and nitrogen (δ ¹⁵N) for each species modeled from isotope ratios measured in feathers of 264 Brewer’s and 82 sagebrush sparrows and environmental …

Sorghum Mutant Rg Displays Antithetic Leaf Shoot Lignin Accumulation Resulting In Improved Stem Saccharification Properties, Carloalberto Petti, Anne E. Harman-Ware, Mizuki Tateno, Rekha Kushwaha, Andrew Shearer, A. Bruce Downie, Mark Crocker, Seth Debolt

Horticulture Faculty Publications

BACKGROUND: Improving saccharification efficiency in bioenergy crop species remains an important challenge. Here, we report the characterization of a Sorghum (Sorghum bicolor L.) mutant, named REDforGREEN (RG), as a bioenergy feedstock.

RESULTS: It was found that RG displayed increased accumulation of lignin in leaves and depletion in the stems, antithetic to the trend observed in wild type. Consistent with these measurements, the RG leaf tissue displayed reduced saccharification efficiency whereas the stem saccharification efficiency increased relative to wild type. Reduced lignin was linked to improved saccharification in RG stems, but a chemical shift to greater S:G ratios in RG stem …

Impact Of Mid-Successional Dominant Species On The Diversity And Progress Of Succession In Regenerating Temperate Grasslands, Sandor Bartha, Szilard Szentes, Andras Horvath, Judit Hazi, Zita Zimmerman, Csaba Molnar, Istvan Dancza, Katalin Margoczi, Robert Pal, Dragica Purger, David Schmidt, Miklos Ovari, Cecelia Komoly, Zsuszanna Sutyinszki, Gabor Szabo, Andras Istvan Csatho, Melinda Juhasz, Karoly Penksza, Zsolt Molnar

Biological Sciences

(i) Which species dominate mid-successional old-fields in Hungary? How does the identity of these species relate to local (patch-scale) diversity and to the progress of succession? (ii) Which species have the strongest negative impact on diversity in spontaneous old-field succession and what generalizations are possible about traits of these species? (iii) Are these species dominant or subordinate components in mature target communities? (iv) Do native or alien species have stronger effects on the diversity and progress of succession?

Life History Comparison Of Two Green Lacewing Species Chrysoperla Johnsoni And Chrysoperla Carnea (Neuroptera: Chrysopidae), Kaushalya G. Amarasekare, Peter W. Shearer

Agricultural and Environmental Sciences Faculty Research

We investigated the life histories of two green lacewing species, Chrysoperla johnsoni Henry, Wells, and Pupedis from western North America, and Chrysoperla carnea (Stephens) (Neuroptera: Chrysopidae) from western Europe in the laboratory. There were both similarities and differences in their life history characteristics. C. johnsoni exhibited a significantly longer developmental time for egg, first instar, and pupal stage than C. carnea. C. carnea exhibited a significantly shorter egg to adult developmental time than C. johnsoni. Except for the pupal stage, the survival of all other life history stages was not species-specific. All C. carnea pupae were able to develop …

Observation-Based Algorithm Development For Subsurface Hydrology In Northern Temperate Wetlands, Chun-Mei Chiu

Open Access Dissertations

This study investigates wetland subsurface hydrology, as well as biogeochemistry - which is strongly influenced by water and temperature dynamics - as these interactions are expected to be highly significant, yet remain poorly represented in current ecosystem and climate models.

Northern wetlands have received widespread public attention due to steadily increasing summer mean global temperatures, extreme precipitation events and higher rates of natural greenhouse gas emissions, as well as the significant impacts on them due to human activities. The goal of my graduate research has been to improve quantification of the role of subsurface hydrology in northern wetlands by using …

Growing South Dakota (Fall 2013), College Of Agriculture &. Biological Sciences

Growing South Dakota (Publication of the College of Agriculture, Food and Environmental Sciences)

[Page] 2 Crop Watchers: Plant Science Department Research Efforts Strive To Enhance Farming Practices
[Page] 5 Profiles In Leadership: David Wright; Collegiate Leadership Matters
[Page] 6 Fall Collegiate News
[Page] 8 Opportunities To Explore: College’s Summer Camps Help Spark Career Interests
[Page] 10 Collaborative Campaign: Sales Of Cull Cows Helping Fund New SDSU Cow-Calf Facility
[Page] 12 Notable
[Page] 13 A Message From The SDSU Foundation

Tallgrass Prairie Center Newsletter, Autumn 2013, University Of Northern Iowa. Tallgrass Prairie Center.

Tallgrass Prairie Center Newsletter

Inside This Issue:

-- New Roles at the Tallgrass Prairie Center
-- UNI Roadside Program Takes Storm Lake by Storm: 27th Annual Roadside Conference Marks "A Watershed Year"
-- Volunteer Tree Control
-- To what forb does this seed pod belong?
-- Milkweeds for Monarchs and Other Native Pollinators
-- Featured Student Employees/Interns

Nomenclatural Transfers In The Pantropical Genus Myrsine (Myrsinaceae), Jon M. Ricketson, John J. Pipoly Iii

Marine & Environmental Sciences Faculty Articles

The names of 14 taxa of Rapanea Aubl. are transferred to Myrsine L. (Myrsinaceae). The 14 new combinations include: M. acutiloba (Mez) Ricketson & Pipoly [≡ R. acutiloba Mez]; M. amischocarpa (A. C. Sm.) Ricketson & Pipoly [≡ R. amischocarpa A. C. Sm.]; M. boivinii (Mez) Ricketson & Pipoly [≡ R. boivinii Mez]; M. comorensis (Mez) Ricketson & Pipoly [≡ R. comorensis Mez]; M. courboniana (Mez) Ricketson & Pipoly [≡ R. courboniana Mez]; M. crassiramea (A. C. Sm.) Ricketson & Pipoly [≡ R. crassiramea A. C. Sm.]; M. daphnoides (Mez) Ricketson & Pipoly [≡ R. daphnoides Mez]; M. forbesii (Mez) …

Functional Characterization Of Metallothioneins In Arabidopsis And Barley, Nimnara Yookongkaew

Open Access Dissertations

Metalothioneins (MTs) are metal binding proteins that can bind metals such as Cu, Zn, and Cd but the functions of MTs in plants are largely unknown. To understand the function of MTs in Arabidopsis, T-DNA insertion mutants lacking 4 MT genes including MT1a, MT2a, MT2b and MT3 were developed. The quadruple mutant (mt1a/mt2a/mt2b/mt3) showed no visible phenotype under standard growth conditions. However, it accumulated higher Cu in leaves compared to wild type but lower Cu in seeds. Further analysis showed that triple mutants lacking both MT1a and MT2b, which are highly expressed in vascular tissues, had similar …

Regulation Of D-Galacturonate Metabolism In Caulobacter Crescentus By Humr, A Laci-Family Transcriptional Repressor, Craig Stephens, Aaesha I. Sheikh, Deborah Caswell, Cynthia Dick, Spencer Gang, Justin Jarrell, Ankita Kohli, Amanda Lieu, Jared Lumpe, Meghan Garrett, Jennifer Parker

Biology

The oligotrophic freshwater bacterium Caulobacter crescentus encodes a cluster of genes (CC_1487 to CC_1495) shown here to be necessary for metabolism of D-galacturonate, the primary constituent of pectin, a major plant polymer. Sequence analysis suggests that these genes encode a version of the bacterial hexuronate isomerase pathway. A conserved 14 bp sequence motif is associated with promoter regions of three operons within this cluster, and is conserved in homologous gene clusters in related alpha-Proteobacteria. Embedded in the hexuronate gene cluster is a gene (CC_1489) encoding a member of the LacI family of bacterial transcription factors. This gene product, designated here …

Plant Community Composition And Structure Monitoring In Scotts Bluff National Monument, 2013 Annual Report, Isabel Ashton, Michael Prowatzke

United States National Park Service: Publications

Introduction

During the last century, much of the prairie within the Northern Great Plains has been plowed for cropland, planted with non-natives to maximize livestock production, or otherwise developed, making it one of the most threatened ecosystems in the United States. Within Nebraska, greater than 77% of the area of native mixed grass prairie has been lost since European settlement (Samson and Knopf 1994). The National Park Service (NPS) plays an important role in preserving and restoring some of the last pieces of intact prairies within its boundaries. The stewardship goal of the NPS is to “preserve ecological integrity and …

The Role Of Soil Microorganisms In The Resistance Of Giant Ragweed, Horseweed, And Common Lambsquarters To Glyphosate, Jessica Renee Schafer-Bugg

Open Access Dissertations

Continuous glyphosate use has contributed to an increasing number of problematic glyphosate-resistant (GR) weeds. The mechanism of resistance in many GR weeds is poorly understood, in part, due to a poor understanding of how exactly glyphosate kills a plant. In previous research, the efficacy of glyphosate was demonstrated to be strongly influenced by root invading soil-borne microorganisms. However, this interaction among plants, glyphosate, and soil microorganisms has only been studied in a number of crop plants, but not in weed species. This is surprising since the soil biotic environment has a strong impact on the activity of this important herbicide. …

Genetic Engineering Of Black Cherry (Prunus Serotina) For Reproductive Sterility And Insect Pest Resistance, Ying Wang

Open Access Dissertations

Black cherry (Prunus serotina Ehrh.) is one of the most valuable hardwoods for high- end cabinetry, furniture, architectural millwork, paneling, and veneer. However, the damage caused by cambial-mining insect pests triggers gummosis in black cherry, a non-specific defense response in which resinous gum is deposited at the site of injury. The gum defects dramatically decrease the yield of high-quality black cherry lumber, and the value can be reduced by as much as 90%. The goal of this project was to optimize the transformation and in vitro rooting system, and to develop transgenic black cherry for reproductive sterility and insect pest …

Management Of Potato Leafhopper And Maple Spider Mite On Nursery Grown Maples, Julia Prado Beltran

Open Access Dissertations

Potato leafhopper Empoasca fabae (Harris) (Homoptera: Cicadellidae) and maple spider mite Oligonychus aceris (Shimer) (Acarina: Tetranychidae) are important pests of maple trees. Investigations determined how insecticide use and fertilization impacted the abundance of E. fabae and O. aceris on `Red Sunset' red maple and `Autumn Blaze' Freeman maples. Bifenthrin applications directed against leafhoppers reduced damage to both cultivars, but increased O. aceris on Autumn Blaze. Using a threshold of one leafhopper per branch to trigger pesticide applications protected Red Sunset maples from leafhopper injury. It also prevented outbreaks of O. aceris on Autumn Blaze because few trees reached this density. …

Ozonation Systems As A Non-Chemical Alternative For Stored Grain Protection, Carlos A. Campabadal

Open Access Dissertations

The use of ozone as a non-chemical alternative in stored grain protection was studied by conducting scale-up demonstrations using a fixed bed ozonation system and developing a semi-continuous counterflow and a continuous flow ozonation treatment system. The objectives of this research were to determine the efficacy of ozonation to control insect pests without affecting end-use quality; to prove the concept of the semi-continuous counterflow ozonation system to ozonate grain at a faster rate and quantify its effect on mold growth reduction; to evaluate the efficacy of a modified screw conveyor for pest control by treating grain in a continuous-flow ozonation …

Construction Of A Sonchus Yellow Net Virus Minireplicon: A Step Toward Reverse Genetic Analysis Of Plant Negative-Strand Rna Viruses, Uma Ganesan, Jennifer N. Bragg, Min Deng, Sharon Marr, Mi Yeon Lee, Shasha Qian, Manling Shi, Justin Kappel, Cole Peters, Yeon Lee, Michael M. Goodin, Ralf G. Dietzgen, Zhenghe Li, Andrew O. Jackson

Plant Pathology Faculty Publications

Reverse genetic analyses of negative-strand RNA (NSR) viruses have provided enormous advances in our understanding of animal viruses over the past 20 years, but technical difficulties have hampered application to plant NSR viruses. To develop a reverse genetic approach for analysis of plant NSR viruses, we have engineered Sonchus yellow net nucleorhabdovirus (SYNV) minireplicon (MR) reporter cassettes for Agrobacterium tumefaciens expression in Nicotiana benthamiana leaves. Fluorescent reporter genes substituted for the SYNV N and P protein open reading frames (ORFs) exhibited intense single-cell foci throughout regions of infiltrated leaves expressing the SYNV MR derivatives and the SYNV nucleocapsid (N), phosphoprotein …

Redbud Seedpods Hold Surprises, W. John Hayden

Biology Faculty Publications

As fall advances across the Old Dominion, canopies of redbud, the 2013 VNPS Wildflower of the Year, transform themselves from green to gold, revealing seed pods also changing color from pale green to dark chocolaty brown. These seedpods, which may be retained on the tree into winter, are typical legume fruits, the product of the flower’s simple pistil, each containing several seeds. Unlike most legumes, however, redbud seed pods seem disinclined to open and release individual seeds for dispersal. Redbud fruits tend to disperse intact. Once on the ground, the inevitable action of weather and microbes gradually degrades the pod, …

Wildflowers & Other Herbaceous Plants Of Utah Rangelands, Mindy Pratt, Chad Reid, Roger Banner, James Bowns

All Current Publications

No abstract provided.

Rates Of Carbon And Nitrogen Stable Isotope Turnover In Fin Tissues Of Gambusia Affinis, Michael Bingham, Dr. Jeff Bullock

Journal of Undergraduate Research

The principle objectives of this research analysis were to determine the uptake and turnover rates of carbon and nitrogen stable isotopes in fish and to establish if this isotope verification procedure is possible by testing tissue samples of their fins. This investigation is separated into two main experiments: first, the stable isotope incorporation in the new growth of fin tissue, and second, the rate of stable isotope turnover in the old growth of fin tissue. Both experiments of this study were done with Gambusia affinis, a species of fish better know as mosquito fish.

The Maya Defensive Earthworks And Agricultural Land Use Of Tikal, Ryan Sweetwood, Dr. Richard Terry

Journal of Undergraduate Research

Concurrent with the settlement surveys and excavations, Soil scientist from Brigham Young University and from Guatemala examined 62 soil profiles and collected soil samples for analysis at the Brigham Young University soil and plant analysis laboratory. The samples are currently being characterized for physical and chemical properties at the laboratory. Stable carbon isotopes will be analyzed to investigate the extent of ancient maize agriculture in the areas inside and outside the earthwork, using methods recently applied in several parts of the Maya Lowlands (Jensen 2003; Jensen et al. nd; Webb et al., nd; Webb, Henry, and Healy 2004). The soil …