Digital Commons Network^™

A Molecular Framework Phylogeny For Ptilotus (Amaranthaceae), Timothy A. Hammer

Biological Sciences Theses & Dissertations

Ptilotus (Amaranthaceae) is an Australian genus with over 100 species, most of which occur in arid Western Australia. Ptilotus has been a taxonomically difficult genus; despite rigorous morphological studies into the genus over many years, previous workers have found it difficult to delimit infrageneric groups due to inconsistent morphological variation. With the goal to establish a phylogenetic framework for the genus, 100 taxa were sampled, including 87 Ptilotus spp., and the ITS nrDNA and matK cpDNA were sequenced. The phylogeny was reconstructed using Bayesian, maximum likelihood and maximum parsimony analyses on separate and concatenated datasets. Morphological characters were assessed and …

Warming, Competition, And Bromus Tectorum Population Growth Across An Elevation Gradient, Aldo Compagnoni, Peter B. Adler

Green Canyon Environmental Research Area, Logan Utah

Cheatgrass (Bromus tectorum) is one of the most problematic invasive plant species in North America and climate change threatens to exacerbate its impacts. We conducted a two‐year field experiment to test the effect of warming, competition, and seed source on cheatgrass performance across an elevation gradient in northern Utah. We hypothesized that warming would increase cheatgrass performance, but that warming effects would be limited by competing vegetation and by local adaptation of cheatgrass seed sources. The warming treatment relied on open top chambers, we removed vegetation to assess the effect of competition from neighboring vegetation, and we reciprocally …

Sesquiterpene Synthase Gene And Protein, Joe Chappell, Bryan T. Greenhagen

Plant and Soil Sciences Faculty Patents

The invention relates to sesquiterpene synthases and methods for their production and use. Particularly, the invention provides nucleic acids comprising the nucleotide sequence of citrus valencene synthase (CVS) which codes for at least one CVS. The invention further provides nucleic acids comprising the nucleotide sequence coding for amino acid residues forming the tier 1 and tier 2 domains of CVS. The invention also provides for methods of making and using the nucleic acids and amino acids of the current invention.

Limited Alpine Climatic Warming And Modeled Phenology Advancement For Three Alpine Species In The Northeast United States, Michael L. Davis, Kenneth D. Kimball, Douglas M. Weihrauch, Georgia L. D. Murray, Kenneth Rancourt

Ecology Center Publications

• Premise of the study: Most alpine plants in the Northeast United States are perennial and flower early in the growing season, extending their limitedgrowing season. Concurrently, they risk the loss of reproductive efforts to late frosts. Quantifying long-term trends in northeastern alpine flower phenology and late-spring/early-summer frost risk is limited by a dearth of phenology and climate data, except for Mount Washington, New Hampshire (1916 m a.s.l.).
• Methods: Logistic phenology models for three northeastern US alpinespecies (Diapensia lapponica, Carex bigelowii and Vaccinium vitis-idaea) were developed from 4 yr (2008–2011) of phenology and air temperature measurements from 12 …

Selection And Genetic Drift In North American Maize, Collin Lamkey

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Characterizing the impact of selection and genetic drift in the formation of heterotic groups and patterns in maize can reveal important insights into the mechanism underlying adaptation, and the relative importance of each force in defining population structure. The objectives were to characterize the role selection for hybrid performance had in defining population structure in both a reciprocal full-sib selection (RFS) program and a large collection of historically important inbred lines.

The Illumina GoldenGate Assay was used to genotype the University of Nebraska-Lincoln Replicated Recurrent Selection (UNL-RpRS) program. Eight cycles of S1-progeny and RFS selection were conducted for an index …

Ergovaline Stability In Tall Fescue Based On Sample Handling And Storage Methods, Krista La Moen Lea, Lori Smith, Cynthia Gaskill, Robert Coleman, S. Ray Smith

Plant and Soil Sciences Faculty Publications

Ergovaline is an ergot alkaloid produced by the endophyte Neotyphodium coenophialum (Morgan-Jones and Gams) found in tall fescue [Schedonorus arundinacea (Schreb.) Dumort.] and blamed for a multitude of livestock disorders. Ergovaline is known to be unstable and affected by many variables. The objective of this study was to determine the effect of sample handling and storage on the stability of ergovaline in tall fescue samples. Fresh tall fescue was collected from a horse farm in central Kentucky at three harvest dates and transported on ice to the University of Kentucky Veterinary Diagnostic Laboratory. Plant material was frozen in liquid …

Polypeptides, Nucleic Acid Molecules, And Methods For Synthesis Of Triterpenes, Joe Chappell, Thomas D. Niehaus, Shigeru Okada, Timothy P. Devarenne, David Watt

Plant and Soil Sciences Faculty Patents

This application relates to the polypeptides, nucleic acid molecules, vectors, transfected cells, and methods for synthesis of triterpenes, including botryococcene.

Chlorovirus Skp1-Binding Ankyrin Repeat Protein Interplay And Mimicry Of Cellular Ubiquitin Ligase Machinery, Eric A. Noel, Ming Kang, Jiri Adamec, James L. Van Etten, George A. Oyler

James Van Etten Publications

The ubiquitin-proteasome system is targeted by many viruses that have evolved strategies to redirect host ubiquitination machinery. Members of the genus Chlorovirus are proposed to share an ancestral lineage with a broader group of related viruses, nucleo-cytoplasmic large DNA viruses (NCLDV). Chloroviruses encode an Skp1 homolog and ankyrin repeat (ANK) proteins. Several chlorovirus-encoded ANK repeats contain C-terminal domains characteristic of cellular F-boxes or related NCLDV chordopox PRANC (pox protein repeats of ankyrin at C-terminal) domains. These observations suggested that this unique combination of Skp1 and ANK repeat proteins might form complexes analogous to the cellular Skp1-Cul1-F-box (SCF) ubiquitin ligase complex. …

Organic Treatments For Control Of Pepper Weevil (Coleoptera: Curculionidae), Karla M. Addesso, Philip A. Stansly, Barry C. Kostyk, Heather J. Mcauslane

Agricultural and Environmental Sciences Faculty Research

The pepper weevil, Anthonomus eugenii Cano (Coleoptera: Curculionidae) is a major pest of pepper (Capsicum spp.; Solanales: Solanaceae) in the southern United States, Mexico, Central America and the Caribbean. Feeding and oviposition cause flower and fruit abscission and internal fruit damage resulting in serious yield losses. Females lay eggs in flower buds and small fruits, shielding larvae from contact pesticides, leaving only the adult stage vulnerable. The purpose of this study was to investigate low-risk and organic products for use against the pepper weevil to provide both organic and conventional growers with more control options. A neem product (Ecozin® …

Response Of Conifer-Encroached Shrublands In The Great Basin To Prescribed Fire And Mechanical Treatments, Richard F. Miller, Jaime Ratchford, Bruce A. Roundy, Robin J. Tausch, April Hulet, Jeanne C. Chambers

Articles

In response to the recent expansion of piñon and juniper woodlands into sagebrush-steppe communities in the northern Great Basin region, numerous conifer-removal projects have been implemented, primarily to release understory vegetation at sites having a wide range of environmental conditions. Responses to these treatments have varied from successful restoration of native plant communities to complete conversion to nonnative invasive species. To evaluate the general response of understory vegetation to tree canopy removal in conifer-encroached shrublands, we set up a region-wide study that measured treatment-induced changes in understory cover and density. Eleven study sites located across four states in the Great …

Msh1-Induced Non-Genetic Variation Provides A Source Of Phenotypic Diversity In Sorghum Bicolor, Roberto De La Rosa Santamaria, Mon-Ray Shao, Guomei Wang, David O. Nino-Liu, Hardik Kundariya, Yashitola Wamboldt, Ismail M. Dweikat, Sally Ann Mackenzie

Department of Agronomy and Horticulture: Faculty Publications

MutS Homolog 1 (MSH1) encodes a plant-specific protein that functions in mitochondria and chloroplasts. We showed previously that disruption or suppression of the MSH1 gene results in a process of developmental reprogramming that is heritable and non-genetic in subsequent generations. In Arabidopsis, this developmental reprogramming process is accompanied by striking changes in gene expression of organellar and stress response genes. This developmentally reprogrammed state, when used in crossing, results in a range of variation for plant growth potential. Here we investigate the implications of MSH1 modulation in a crop species. We found that MSH1-mediated phenotypic variation in Sorghum bicolor …

A Novel Partitivirus That Confers Hypovirulence On Plant Pathogenic Fungi, Xueqiong Xiao, Jiasen Cheng, Jinghua Tang, Yanping Fu, Daohong Jiang, Timothy S. Baker, Said A. Ghabrial, Jiatao Xie

Plant Pathology Faculty Publications

Members of the family Partitiviridae have bisegmented double-stranded RNA (dsRNA) genomes and are not generally known to cause obvious symptoms in their natural hosts. An unusual partitivirus, Sclerotinia sclerotiorum partitivirus 1 (SsPV1/WF-1), conferred hypovirulence on its natural plant-pathogenic fungal host, Sclerotinia sclerotiorum strain WF-1. Cellular organelles, including mitochondria, were severely damaged. Hypovirulence and associated traits of strain WF-1 and SsPV1/WF-1 were readily cotransmitted horizontally via hyphal contact to different vegetative compatibility groups of S. sclerotiorum and interspecifically to Sclerotinia nivalis and Sclerotinia minor. S. sclerotiorum strain 1980 transfected with purified SsPV1/WF-1 virions also exhibited hypovirulence and associated traits similar …

The Trehalose Pathway In Maize: Conservation And Gene Regulation In Response To The Diurnal Cycle And Extended Darkness, Clémence Henry, Samuel W. Bledsoe, Allison Siekman, Alec Kollman, Brian M. Waters, Regina Feil, Mark Stitt, L. Mark Lagrimini

Department of Agronomy and Horticulture: Faculty Publications

Energy resources in plants are managed in continuously changing environments, such as changes occurring during the day/night cycle. Shading is an environmental disruption that decreases photosynthesis, compromises energy status, and impacts on crop productivity. The trehalose pathway plays a central but not well-defined role in maintaining energy balance. Here, we characterized the maize trehalose pathway genes and deciphered the impacts of the diurnal cycle and disruption of the day/night cycle on trehalose pathway gene expression and sugar metabolism. The maize genome encodes 14 trehalose-6-phosphate synthase (TPS) genes, 11 trehalose-6-phosphate phosphatase (TPP) genes, and one trehalase gene. Transcript abundance of most …

A Review Of The Removal Of Arundo Donax From A Riparian Area Within San Timoteo Canyon, Catherine E. Howe

Electronic Theses, Projects, and Dissertations

A site within San Timoteo Canyon was revisited, 13-14 years after treatment, to look at long-term effects of Arundo donax removal. The data obtained were used to determine whether A. donax had re-invaded, other non-native species had established the area, or if native species were able to grow in place of the removed A. donax. The previous removals included a combination of grinding large patches of A. donax and then foliar spraying, foliar spraying of uncut plants, and direct spraying of hand cut stems, depending upon the location and size of the plant. The effects of the A. donax …

Phytochemical, Antioxidant And Antibacterialpotential Of Elaeagnus Kologa (Schlecht.) Leaf., Zoe Merculieff, Shubharani Ramnath, Seethalakshmi Madhukar Sankoli, Sivaram Venkataramegowda, Ganti S. Murthy, Ruben Michael Ceballos

Biological Sciences Faculty Publications and Presentations

Objective To screen different solvent extracts of Elaeagnus kologa (E. kologa) leaf to determine the phytochemicals, potent antioxidant and antibacterial activity to find out the possible source of applied pharmaceutical formulations. Methods Solvent extracts of leaf material were prepared using the Soxhlet apparatus. A study was performed on antioxidant activity of methanolic extract of leaf by 1-1-diphenyl-2-picrylhydrazyl method. The phenolic and flavonoid content of all the fractions were determined using high performance liquid chromatography. Leaves were also subjected to protein and carbohydrate test. Results The total phenols, flavonoids were found to be high in petroleum ether as compare to other …

Diatom Flora In Subterranean Ecosystems: A Review, Elisa Falasco, Luc Ector, Marco Isaia, Carlos E. Wetzel, Lucien Hoffmann, Francesca Bona

International Journal of Speleology

In scarcity of light and primary producers, subterranean ecosystems are generally extremely oligotrophic habitats, receiving poor supplies of degradable organic matter from the surface. Human direct impacts on cave ecosystems mainly derive from intensive tourism and recreational caving, causing important alterations to the whole subterranean environment. In particular, artificial lighting systems in show caves support the growth of autotrophic organisms (the so-called lampenflora), mainly composed of cyanobacteria, diatoms, chlorophytes, mosses and ferns producing exocellular polymeric substances (EPSs) made of polysaccharides, proteins, lipids and nucleic acids. This anionic EPSs matrix mediates to the intercellular communications and participates to the chemical …

Chromosome Counts For Packera Paupercula Variety Gypsophila, Chad Larson

Journal of Undergraduate Research at Minnesota State University, Mankato

New plant species develop when diploid plants (having two sets of chromosomes) spontaneously double their chromosomes and the resulting tetraploids (having four sets of chromosomes) are no longer able to back cross to diploid members of the population. The North American plant species Packera paupercula (balsam-leafed ragwort), is widespread and morphologically diverse. An isolated group of populations from the chalky soils of west-central Alabama was recently named Packera paupercula variety gypsophila (the chalk-loving balsam ragwort). The variety’s large diameter pollen grains suggest it may be tetraploid. This project attempts the first chromosome count for the variety by examining cells undergoing …

Life History Of Paracoccus Marginatus (Hemiptera: Pseudococcidae) On Four Host Plant Species Under Laboratory Conditions, Kaushalya G. Amarasekare, Catharine M. Mannion, Lance S. Osborne, Nancy D. Epsky

Agricultural and Environmental Sciences Faculty Research

Life history of the mealybug, Paracoccus marginatus Williams and Granara de Willink, on three ornamental plants [Hibiscus rosa-sinensis L., Acalypha wilkesiana (Muell.-Arg.), and Plumeria rubra L.] and one weed species (Parthenium hysterophorus L.) was studied under laboratory conditions. Mealybugs were able to develop, survive, and reproduce on all four hosts; however, there were differences in the life history parameters. Adult females that developed on acalypha and parthenium emerged ≈1 d earlier than those that developed on hibiscus and plumeria. Adult males had a longer developmental time on plumeria than on the other hosts. Survival of first- and second-instar …

Contrasting Metabolism In Perenniating Structures Of Upland And Lowland Switchgrass Plants Late In The Growing Season, Nathan Palmer, Aaron J. Saathoff, Christian M. Tobias, Paul Twigg, Yuannan Xia, Kenneth P. Vogel, Soundararajan Madhavan, Scott E. Sattler, Gautam Sarath

Department of Agronomy and Horticulture: Faculty Publications

Background: Switchgrass (Panicum virgatum L.) is being developed as a bioenergy crop for many temperate regions of the world. One way to increase biomass yields is to move southern adapted lowland cultivars to more northern latitudes. However, many southerly adapted switchgrass germplasm can suffer significant winter kill in northerly climes.

Materials and Methods: Here, we have applied next-generation sequencing in combination with biochemical analyses to query the metabolism of crowns and rhizomes obtained from two contrasting switchgrass cultivars. Crowns and rhizomes from field-grown lowland (cv Kanlow) and upland (cv Summer) switchgrass cultivars were collected from three randomly selected post-flowering …

Characterization Of Fall Leaves As A Source Of Cellulosic Ethanol, Justin Burum

Journal of Undergraduate Research at Minnesota State University, Mankato

Ethanol is becoming increasingly popular as a fossil fuel additive or substitute. However, current production of ethanol from corn impacts food prices and appears to have an overall low net yield. New sources need to be identified and new processes developed for ethanol production. Cellulosic ethanol is one such new source. Plant material contains a large amount of cellulose and other polysaccharides which are potential feed stocks for ethanol production. The purpose of this experiment was to characterize the polysaccharide, lignin, and ash content of fall leaves to estimate their potential for ethanol production. A slight modification of the NREL …

Diversity Of Bacteria Carried By Pinewood Nematode In Usa And Phylogenetic Comparison With Isolates From Other Countries, Diogo Neves Proença, Luís Fonseca, Thomas Powers, Isabel M.O. Abrantes, Paula V. Morais

Department of Plant Pathology: Faculty Publications

Pine wilt disease (PWD) is native to North America and has spread to Asia and Europe. Lately, mutualistic relationship has been suggested between the pinewood nematode (PWN), Bursaphelenchus xylophilus the causal nematode agent of PWD, and bacteria. In countries where PWN occurs, nematodes from diseased trees were reported to carry bacteria from several genera. However no data exists for the United States. The objective of this study was to evaluate the diversity of the bacterial community carried by B. xylophilus, isolated from different Pinus spp. with PWD in Nebraska, United States. The bacteria carried by PWN belonged to Gammaproteobacteria …

Expression Of 9/13 Hydroperoxide Lyase In Cucumber Leaves, Samee Ranginwala

Journal of Undergraduate Research at Minnesota State University, Mankato

Fatty Acid 9/13-Hydroperoxide Lyase (9/13-HPL) in the cucumber plant is an enzyme that cleaves either 9- or 13-hydroperoxides of polyunsaturated fatty acids to form volatile C9 or C6 aldehydes respectively. Since these aldehydes may play a role in the plant’s defenses against pathogens (K. Matsui, et. al. Phytochemistry 67 (2006) 649-657), the enzyme is stress induced during vulnerable times such as when the plant is injured. In order to better understand how this enzyme is induced, we have developed a Real Time Polymerase Chain Reaction method to quantitate levels of 9/13-HPL mRNA. In initial experiments, the effect of mechanical wounding …

Evaluation Of Pretreatment Methods In The Production Of Ethanol From Cattail Leaves, Kristen Krahmer, Elijah Wreh

Journal of Undergraduate Research at Minnesota State University, Mankato

Previous research in this lab indicated that cattails are a potential source of biomass for the production of cellulosic ethanol since their carbohydrate composition is comparable to that of other plants being considered for biofuel production. To further test their viability, we tested various pretreatment methods on dried cattail leaves. Before polysaccharides in plants can be enzymatically hydrolyzed to fermentable sugars, the plant material must be pretreated to render the polysaccharides accessible to the enzymes. The purpose of this project has been to compare the efficiency of sulfuric acid and ammonia pretreatment methods in preparing cattail biomass for ethanol production. …

Bot Canker Pathogens Could Complicate The Management Of Phytophthora Black Pod Of Cocoa, Idowu Jaiyeola, Rufus J. Akinrinlola, Gbodope S. Ige, Oluwatimilehin O. Omoleye, Abiola Oyedele, Bayode J. Odunayo, Omotayo J. Emehin, Marcus O. Bello, Anthony O. Adesemoye

Department of Plant Pathology: Faculty Publications

Black pod is a major hindrance to cocoa production in Nigeria. It is caused by three different Phytophthora species with Phytophthora megakarya as the most important species in Nigeria and West African subregion. Phytophthora spp. may enhance infections by opportunistic pathogens such as members of the Botryosphaeriacea that cause branch and trunk cankers in many woody plants across the world. Botryosphaeriacea has not been reported in cocoa nor in any woody plants in Nigeria to our knowledge. In the cocoa belt of Nigeria, research and understanding on cocoa black pod and Phytophthora is limited partly because of delayed or no …

Tombusvirus-Yeast Interactions Identify Conserved Cell-Intrinsic Viral Restriction Factors, Zsuzsanna Sasvari, Paulina Alatriste Gonzalez, Peter D. Nagy

Plant Pathology Faculty Publications

To combat viral infections, plants possess innate and adaptive immune pathways, such as RNA silencing, R gene and recessive gene-mediated resistance mechanisms. However, it is likely that additional cell-intrinsic restriction factors (CIRF) are also involved in limiting plant virus replication. This review discusses novel CIRFs with antiviral functions, many of them RNA-binding proteins or affecting the RNA binding activities of viral replication proteins. The CIRFs against tombusviruses have been identified in yeast (Saccharomyces cerevisiae), which is developed as an advanced model organism. Grouping of the identified CIRFs based on their known cellular functions and subcellular localization in yeast …

Pengaruh Naungan Dan Konsentrasi Pupuk Organik Cair Terhadap Pertumbuhan Tanaman Anggrek Phalaenopsis Hasil Persilangan Kultivar Sayukudion X Taida Snow, Yayat Rochayat Suradinata

Jurnal Kultivasi

Percobaan ini bertujuan untuk menentukan persentase naungan dan konsentrasi pupuk organik cair yang terbaik terhadap pertumbuhan dan perkembangan tanaman anggrek Phalaenopsis hasil persilangan kultivar Sayukudion x Taida Snow. Dilaksanakan di Rumah Kaca Fakultas Pertanian Universitas Padjadjaran, Jatinangor, Sumedang, dengan ketinggian tempat 700 meter dpl, pada bulan Oktober 2011 sampai Januari 2012. Rancangan percobaan yang digunakan adalah Rancangan Petak Terbagi dengan dua faktor dan tiga ulangan. Petak utama adalah persentase naungan (55 %, 65 %, 75 %) dan anak petak adalah konsentrasi pupuk organik cair (1 ml L-1, 2 ml L-1, 3 ml L-1). Perlakuan persentase naungan dan konsentrasi pupuk organik …

Regulation Of Mor By Different Abiotic Stresses In Arabidopsis Thaliana, Luke Stepan, Rucha Karve, Anjali Iyer-Pascuzzi

The Summer Undergraduate Research Fellowship (SURF) Symposium

The climate is changing and as a consequence the environment is becoming hotter and drier. How different plants will react to these changes is unknown. Identification of genes involved in stress tolerance can help predict plant-environment interactions and lead to stress tolerant plants. The MOR gene (Modulator Of Root ROS, ROS = Reactive Oxygen Species) in the model plant Arabidopsis thaliana encodes a transcription factor that may regulate stress responses, as mor mutants are drought tolerant. We hypothesized that MOR expression changes in response to different abiotic stress stimuli. We tested MOR expression in response to salt (NaCl), abscisic acid …

Pengaruh Naungan Net Dan Interval Panen Terhadap Pertumbuhan Tanaman, Hasil, Dan Kualitas Hasil Buncis Cv. Kenya Di Jatinangor, Saphira Dechairani, Tino Mutiarawati Onggo, Wawan Sutari

Jurnal Kultivasi

Di daerah tropis seperti di Indonesia, intensitas cahaya dan temperatur udara yang tinggi menjadi masalah dalam penanaman buncis hasil introduksi dari daerah subtropis, umumnya tanaman buncis yang dimanfaatkan polong mudanya ditanam di dataran tinggi. Masalah dalam penanaman buncis dataran tinggi di dataran medium yang memiliki temperatur udara lebih tinggi dapat diatasi antara lain dengan penggunaan naungan net dan pengaturan interval panen. Percobaan ini bertujuan untuk mempelajari pengaruh naungan net dan interval panen yang dapat memberikan pertumbuhan, hasil dan kualitas hasil yang baik pada tanaman buncis Kenya. Percobaan ini dilaksanakan di Lahan Percobaan Laboratorium Kultur Terkendali Fakultas Pertanian Universitas Padjadjaran, Jatinangor …

Eksplorasi Tanaman Jengkol Di Home Garden Kabupaten Ciamis, Jawa Barat, Yudithia Maxiselly, Debby Ustari

Jurnal Kultivasi

Jengkol plant is one commodity that has some health benefits other than as a food source such as a drug of hypoglycemia in diabetes mellitus. Therefore it is necessary for the exploration activities as the basis for future development. Exploration activities are the basis for determining the location of the natural resources potential. Exploration is also an activity that is able to enrich genetic resources to be developed in the future. The one of jengkol producing areas in West Java is Ciamis district. However there has been no large-scale plantations jengkol, jengkol newly developed individually in the form of a …

Pengaruh Berbagai Komposisi Kompos Dalam Tiga Jenis Media Pembibitan Terhadap Pertumbuhan Bibit Asparagus Dalam Polibeg, F. Kholifah, Tino Mutiarawati Onggo, Wawan Sutari

Jurnal Kultivasi

Asparagus seeding need suitable medium composition in order that seedlings can grow well and proper to be planted.The experiment aims to study the effect of different seedlings medium and various compost compositions within the medium on growth of asparagus seedlings planted in polybag.The experiment was conducted in research station of Agriculture Faculty, Universitas Padjadjaran, Jatinangor, Sumedang, located at 730 m above the sea level, conducted from May 2013 up to August 2013. A factorial randomized blocks design was used with four replications. The First factor was different seedlings medium, which consisted of three levels: rice husk, rice husk charcoal and …