Digital Commons Network^™

Natural Gardening, Lisa Karen Miller

DLPS Faculty Publications

This presentation features methods of natural and organic gardening that preclude the use of harmful pesticides and herbicides.

Ua24 Mcicsl Newsletter - September 2015, Shannon R. Trimboli Education Coordinator

MCICSL Newsletter

This issue includes the following:

Citizen Scientists Contribute Over $46,700 of Labor to Mammoth Cave National Park

Federal Agencies Directed to Advance Citizen Science

as well as education and research highlights,and MCICSL strategic planning.

Unusual Behavior In Parental Care By A House Wren (Troglodytes Aedon): Post Fledging Use Of An Old Nest During Cold Nights, Micah N. Scholer

Articles

I report on the unusual behavior of an adult House Wren (Troglodytes aedon) leading recently fledged young back to the nest for two consecutive nights. The ambient temperature reached below 0°C during both nights. Despite disadvantages associated with remaining in the nest, this observation suggests that adult birds may assess trade-offs between perceived risks versus the benefits of engaging in other activities, in this case roosting communally for thermoregulation.

Community Involvement To Address A Long-Standing Invasive Species Problem: Aspects Of Civic Ecology In Practice, Rebecca W. Dolan, Kelly Harris, Mark Adler

Scholarship and Professional Work - LAS

Invasive non-native species (INS) are found in every city around the globe, but their impacts in urban settings as biological agents of visual pollution that block views of natural landscapes and disconnect citizens from nature are not as often addressed as comprehensively as their impacts in natural areas or agricultural settings. The multiple impacts of INS in cities make them ideal candidates for aspects of Civic Ecology Practice, where local environmental stewardship action is taken to enhance green infrastructure and community well-being in urban and other human-dominated systems. We present details of a community driven program focused on removal of …

A Unique 5' Translation Element Discovered In Triticum Mosaic Virus, Robyn Roberts, Jincan Zhang, Laura K. Mayberry, Satyanarayana Tatineni, Karen S. Browning, Aurelie M. Rakotondrafara

Department of Plant Pathology: Faculty Publications

Several plant viruses encode elements at the 5' end of their RNAs, which, unlike most cellular mRNAs, can initiate translation in the absence of a 5' m7GpppG cap. Here, we describe an exceptionally long (739-nucleotide [nt]) leader sequence in triticum mosaic virus (TriMV), a recently emerged wheat pathogen that belongs to the Potyviridae family of positive-strand RNA viruses. We demonstrate that the TriMV 5' leader drives strong cap-independent translation in both wheat germ extract and oat protoplasts through a novel, noncanonical translation mechanism. Translation preferentially initiates at the 13th start codon within the leader sequence independently of eIF4E but involves …

Climate Extremes Dominating Seasonal And Interannual Variations In Carbon Export From The Mississippi River Basinariations In Carbon Export From The Mississippi River Basin, Hanqin Tian, Wei Ren, Jia Yang, Bo Tao, Wei-Jun Cai, Steven E. Lohrenz, Charles S. Hopkinson, Mingliang Liu, Qichun Yang, Chaoqun Lu, Bowen Zhang, Kamaljit Banger, Shufen Pan, Ruoying He, Zuo Xue

Plant and Soil Sciences Faculty Publications

Knowledge about the annual and seasonal patterns of organic and inorganic carbon (C) exports from the major rivers of the world to the coastal ocean is essential for our understanding and potential management of the global C budget so as to limit anthropogenic modification of global climate. Unfortunately our predictive understanding of what controls the timing, magnitude, and quality of C export is still rudimentary. Here we use a process-based coupled hydrologic/ecosystem biogeochemistry model (the Dynamic Land Ecosystem Model) to examine how climate variability and extreme events, changing land use, and atmospheric chemistry have affected the annual and seasonal patterns …

Nebline, September 2015

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: 4-H Youth “Let the Good Times Grow” at Super Fair

Food & Health

Family Living

Farm & Acreage

Horticulture

Pests & Wildlife

4-H & Youth

Extension Calendar

and other extension news and events

Prescribed Fire Monitoring Report, Tallgrass Prairie National Preserve 2014 (Iqcs Fire Number 285382, 285383, 266782, 285677), Sherry A. Leis, Sarah E. Hinman

United States National Park Service: Publications

Introduction

In 2014, the preserve’s federal and NGO partners conducted prescribed fires during March, April, and October that encompassed 8129.8 acres of Tallgrass Prairie National Preserve (TAPR). This was a unique burn year in that prescribed burns occurred in the spring, the traditional burn season, and the fall. Fall burns were conducted to support needed archaeological surveys as part of the environmental compliance for a symphony event scheduled for June 2015 at the preserve. Burns at TAPR were coordinated with local US Fish and Wildlife Service (USFWS), The Nature Conservancy (TNC), and various units of the National Park Service.

Burns …

Summaries Of Arkansas Cotton Research 2014, Derrick M. Oosterhuis

Arkansas Agricultural Experiment Station Research Series

No abstract provided.

Bypassing Iron Storage In Endodermal Vacuoles Rescues The Iron Mobilization Defect In The Natural Resistance Associated-Macrophage Protein3natural Resistance Associated-Macrophage Protein4 Double Mutant, Viviane Mary, Magali Schnell Ramos, Cynthia Gillet, Amanda L. Socha, Jerome Giraudat, Astrid Agorio, Sylvain Merlot, Colin Clairet, Sun A. Kim, Tracy Punshon, Mary Lou Guerinot, Sebastien Thomine

Dartmouth Scholarship

To improve seed iron (Fe) content and bioavailability, it is crucial to decipher the mechanisms that control Fe storage during seed development. In Arabidopsis (Arabidopsis thaliana) seeds, most Fe is concentrated in insoluble precipitates, with phytate in the vacuoles of cells surrounding the vasculature of the embryo. NATURAL RESISTANCE ASSOCIATED-MACROPHAGE PROTEIN3 (AtNRAMP3) and AtNRAMP4 function redundantly in Fe retrieval from vacuoles during germination. When germinated under Fe-deficient conditions, development of the nramp3nramp4 double mutant is arrested as a consequence of impaired Fe mobilization. To identify novel genes involved in seed Fe homeostasis, we screened an …

Development Of Transgenic Lines To Support Plant Cell Biology Research, Kristin Kopperud

Kaleidoscope

Viruses pose a threat to humans in a variety of ways — from direct infection to imposing devastating effects on the agriculture industry. Prevention of such infection requires knowledge of the mechanisms of viral infection, both in animal- and plant-infecting species. The goal of this project was to identify plant factors that interact with viral proteins in the course of infection leading to disease. Sonchus yellow net virus (SYNV) and Potato yellow dwarf virus (PYDV) were used to test the hypothesis that the viruses utilize different subsets of host factors in order to infect Nicotiana benthamiana, despite both being …

A Structurally Based Analytic Model Of Growth And Biomass Dynamics In Single Species Stands Of Conifers, Robin J. Tausch

Articles

A theoretically based analytic model of plant growth in single species conifer communities based on the species fully occupying a site and fully using the site resources is introduced. Model derivations result in a single equation simultaneously describes changes over both, different site conditions (or resources available), and over time for each variable for each species. Leaf area or biomass, or a related plant community measurement, such as site class, can be used as an indicator of available site resources. Relationships over time (years) are determined by the interaction between a stable foliage biomass in balance with site resources, and …

Prospecting For Energy-Rich Renewable Raw Materials: Agave Leaf Case Study, Kendall R. Corbin, Caitlin S. Byrt, Stefan Bauer, Seth Debolt, Don Chambers, Joseph A. M. Holtum, Ghazwan Karem, Marilyn Henderson, Jelle Lahnstein, Cherie T. Beahan, Antony Bacic, Geoffrey B. Fincher, Natalie S. Betts, Rachel A. Burton

Horticulture Faculty Publications

Plant biomass from different species is heterogeneous, and this diversity in composition can be mined to identify materials of value to fuel and chemical industries. Agave produces high yields of energy-rich biomass, and the sugar-rich stem tissue has traditionally been used to make alcoholic beverages. Here, the compositions of Agave americana and Agave tequilana leaves are determined, particularly in the context of bioethanol production. Agave leaf cell wall polysaccharide content was characterized by linkage analysis, non-cellulosic polysaccharides such as pectins were observed by immuno-microscopy, and leaf juice composition was determined by liquid chromatography. Agave leaves are fruit-like--rich in moisture, …

Compositional Differences In Simulated Root Exudates Elicit A Limited Functional And Compositional Response In Soil Microbial Communities, Michael S. Strickland, Rebecca L. Mcculley, Jim A. Nelson, Mark A. Bradford

Plant and Soil Sciences Faculty Publications

Inputs of low molecular weight carbon (LMW-C) to soil - primarily via root exudates- are expected to be a major driver of microbial activity and source of stable soil organic carbon. It is expected that variation in the type and composition of LMW-C entering soil will influence microbial community composition and function. If this is the case then short-term changes in LMW-C inputs may alter processes regulated by these communities. To determine if change in the composition of LMW-C inputs influences microbial community function and composition, we conducted a 90 day microcosm experiment whereby soils sourced from three different land …

Calmodulin Methyltransferase Is Required For Growth, Muscle Strength, Somatosensory Development And Brain Function, Sitvanit Haziza, Roberta Magnani, Dima Lan, Omer Keinan, Ann Saada, Eli Hershkovitz, Nurit Yanay, Yoram Cohen, Yoram Nevo, Robert L. Houtz, Val C. Sheffield, Hava Golan, Ruti Parvari

Horticulture Faculty Publications

Calmodulin lysine methyl transferase (CaM KMT) is ubiquitously expressed and highly conserved from plants to vertebrates. CaM is frequently trimethylated at Lys-115, however, the role of CaM methylation in vertebrates has not been studied. CaM KMT was found to be homozygously deleted in the 2P21 deletion syndrome that includes 4 genes. These patients present with cystinuria, severe intellectual disabilities, hypotonia, mitochondrial disease and facial dysmorphism. Two siblings with deletion of three of the genes included in the 2P21 deletion syndrome presented with cystinuria, hypotonia, a mild/moderate mental retardation and a respiratory chain complex IV deficiency. To be able to attribute …

You Don’T Have To Go Home But You Carrot Stay Here: Root-Knot Nematode Biological Control In Carrots, Casey R. Martin, Sahar Abdelrazek, Lori A. Hoagland

The Summer Undergraduate Research Fellowship (SURF) Symposium

Root-knot nematodes cause tens of billions of dollars in damages annually in agricultural production. The enormous economic losses brought about by nematodes, combined with the downsides to current methods for handling them, have led to an increased focus in understanding natural plant defense mechanisms and finding alternative methods to lessen the damage done by root-knot nematodes. Endophyte biocontrol agents such as Trichoderma harzianum have shown promise in reducing nematode damage. Recent studies have demonstrated that soil management practices and plant genotype can influence endophyte community structure, but it is unclear whether such differences influence susceptibility to nematode damage. This study …

Thermodynamic Analysis Of Phenylpropanoid Pathway In Arabidopsis Thanliana, Patrick J. Ioerger, Rohit Jaini, John A. Morgan

The Summer Undergraduate Research Fellowship (SURF) Symposium

Biofuels represent a renewable alternative to traditional fossil fuels. As dependence on fossil fuels rise so does the importance of improving the production of alternative fuels. Lignin poses one obstacle in the development of such alternative fuels. Its presence strengthens cell walls and hinders degradation of polysaccharides into monosaccharides, increasing cost and time while decreasing efficiency of the process. Lignin is composed of three monolignols, each of which is produced through the Phenylpropanoid pathway; a series of chemical reactions. This work aims to determine which reactions in the pathway are least thermodynamically favorable and thus most limiting. From metabolic mapping …

Long-Term Tillage System Impacts On Soil Erodibility, Julianne R. Chechanover, Dennis C. Flanagan

The Summer Undergraduate Research Fellowship (SURF) Symposium

Conservation tillage practices, such as no-till agriculture, have the potential of reducing the erodibility of a soil compared to conventional agricultural practices. This research sought to determine whether long-term agricultural practices affect the baseline erodibility properties of a soil. Two soils from Throckmorton-Purdue Agricultural Center in Tippecanoe County, Indiana were used during this experiment. One soil was treated with a long-term conventional tillage (fall chisel, spring disk) system and the other soil was treated with a long-term no-till system. The soils’ interrill erodibility, and rill erodibility and critical hydraulic shear stress were measured under a rainfall simulator using soil boxes …

Detecting Genomic Regions Responsible For Resistance In Arabidopsis, Valeria Cancino, Anjali Iyer-Pascuzzi, Rucha Karve

The Summer Undergraduate Research Fellowship (SURF) Symposium

Ralstonia solanacearum is a soil-borne plant root colonizing pathogen and the casual agent of bacterial wilt (BW) disease. BW leads to severe yield loss in a wide variety of agricultural commodity crops, such as tomato, banana, and pepper. In this study, we look at the plant-pathogen interaction between Ralstonia solanacearum and various ecotypes of Arabidopsis thaliana with the goal of finding resistant ecotypes. To identify resistant ecotypes, seeds are first sterilized and left to soak in the dark. Then the seeds are plated on agar media, transferred to a growth chamber, and allowed to grow for 5 days. On day …

Novel Seed Germination In Response To California’S Historic Drought May Deplete Soil Seed Banks, Amanda M. Burns, Victoria M. Lekson, Helen I. Holmlund, Stephen D. Davis

Biology

We observed novel seed germination, without a fire cue, in an obligate seeding species of chaparral (Ceanothus megacarpus) during historic drought in California (2014). We hypothesized that premature germination was promoted by drought-induced canopy dieback among adults that allowed high radiation loads to reach normally shaded soils, cracking seed coats, facilitating water uptake. We hypothesized that because premature seed germination was late in the season (April, when December is typical) roots would not have time to penetrate deep moisture resources before the onset of summer drought, leading to excessive mortality and eventual depletion of soil seed banks. We …

Comparative Foliar Water Uptake And Leaf Hydrophobicity In Island Versus Mainland Ferns, Victoria M. Lekson, Helen I. Holmlund, Nicole A. Nakamatsu, Amanda M. Burns, Stephen D. Davis

Biology

In 2014, Southern California experienced the worst drought in the last 1,200 years. In this study, the mechanisms of drought tolerance for eight species of ferns in the Santa Monica Mountains were assessed with a focus on foliar water uptake and hydrophobicity of frond (leaf) surfaces. We measured gravimetric foliar water uptake and angle of contact for a drop of water on a frond. Seasonal shifts were tracked as a method of following drought response patterns.

Fog is becoming more important due to limited ground water. Fog is far more common on Santa Cruz Island off the coast of California …

Chemical Oxygen Demand Reduction Using The Algae Dunaliella Primolecta And Chlorella Vulgaris, Angeles L. Mora, Alejandro Hernandez, Alejandro Calderón-Urrea

STAR Program Research Presentations

Farm industry wastewater is characterized by high organic materials and by high chemical oxygen demand (COD). Farms with large livestock and poultry operations can be a major source of wastewater thus a major concern for effective environmental and industrial management. Effective environmental and industrial management are high in cost therefor biofuels produced from plants have a potential of replacing a portion of fossil fuel consumption with a renewable efficient alternative. Due to California’s water crisis in the recent years, it is questioned if a biological treatment system that uses algal growth to create renewable energy in the form of biodiesel …

Trait Associations In Common Bean Genotypes Grown Under Drought Stress And Field Infestation By Bsm Bean Fly, Daniel Ambachew, Firew Mekbib, Asrat Asfaw, Stephen E. Beebe, Matthew W. Blair

Agricultural and Environmental Sciences Faculty Research

Understanding functional relations among plant traits and their modulation by growing conditions is imperative in designing selection strategies for breeding programs. This study assessed trait relationships among 196 common bean genotypes exposed to stresses for drought and field infestation of bean fly or bean stem maggot (BSM). The study was carried out at two locations and data was analyzed with linear correlation, path coefficient and genotype × trait biplot analyses. Multiple trait data related to mechanisms of drought and bean fly tolerance were collected on 196 genotypes grown under i) water deficit at mid-pod fill, or ii) unprotected against bean …

Chlorophyll Synthase Under Epigenetic Surveillance Is Critical For Vitamin E Synthesis, And Altered Expression Affects Tocopherol Levels In Arabidopsis, Chunyu Zhang, Wei Zhang, Guodong Ren, Denli Li, Rebecca E. Cahoon, Ming Chen, Yongming Zhou, Bin Yu, Edgar B. Cahoon

Center for Plant Science Innovation: Faculty Publications

Chlorophyll synthase catalyzes the final step in chlorophyll biosynthesis: the esterification of chlorophyllide with either geranylgeranyl diphosphate or phytyl diphosphate (PDP). Recent studies have pointed to the involvement of chlorophyll-linked reduction of geranylgeranyl by geranylgeranyl reductase as a major pathway for the synthesis of the PDP precursor of tocopherols. This indirect pathway of PDP synthesis suggests a key role of chlorophyll synthase in tocopherol production to generate the geranylgeranyl-chlorophyll substrate for geranylgeranyl reductase. In this study, contributions of chlorophyll synthase to tocopherol formation in Arabidopsis (Arabidopsis thaliana) were explored by disrupting and altering expression of the corresponding gene …

The Non-Native Plant Rosa Multifl Ora Expresses Shade Avoidance Traits Under Low Light Availability, Rebecca E. Drenovsky, Daniel M. Dlugos, Hillary Collins, Elise M. Bartelme

Biology

PREMISE OF THE STUDY: Shade tolerance is a key trait promoting invasive plant performance in forest interiors. Rosa multifl ora is a problematic invasive shrub in the northeastern United States, occurring in edge habitats and encroaching into forests. Our objective was to evaluate the shade tolerance of R. multifl ora to assess how ecophysiological traits may facilitate its spread into forest interiors. METHODS: In the fi eld, we documented shrub and seed bank density, fecundity, phenology, and seasonal photosynthetic rates of R. multifl ora in contrasting light environments. In the greenhouse, we exposed seedlings to simulated canopy treatments by altering …

Bioenergy And African Transformation, Lee R. Lynd, Mariam Sow, Annie Chimphango, Luis Cortez, Carlos H. Brito Cruz, Mosad Elmissiry, Mark Laser

Dartmouth Scholarship

Among the world’s continents, Africa has the highest incidence of food insecurity and poverty and the highest rates of population growth. Yet Africa also has the most arable land, the lowest crop yields, and by far the most plentiful land resources relative to energy demand. It is thus of interest to examine the potential of expanded modern bioenergy production in Africa. Here we consider bioenergy as an enabler for development, and provide an overview of modern bioenergy technologies with a comment on application in an Africa context. Experience with bioenergy in Africa offers evidence of social benefits and also some …

Rust Diseases On Switchgrass (Panicum Virgatum), Ying Ma

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Switchgrass (Panicum virgatum) is a perennial C₄ grass native to the central prairies of North America. Recent development of switchgrass as a sustainable biofuel feedstock has raised interest in diseases that could impact switchgrass, especially when grown under monoculture conditions. Among the known diseases of switchgrass, rust diseases are the most widespread and could potentially impact yield and biomass quality of new switchgrass cultivars. Two species of rust fungi, Uromyces graminicola and Puccinia emaculata, are known to infect switchgrass, with P. emaculata being the primary or sole rust pathogen on switchgrass in southern US states. The …

Characterization Of A Novel Megabirnavirus From Sclerotinia Sclerotiorum Reveals Horizontal Gene Transfer From Single-Stranded Rna Virus To Double-Stranded Rna Virus, Minghong Wang, Yong Wang, Xiangzhong Sun, Jiasen Cheng, Yanping Fu, Huiquan Liu, Daohong Jiang, Said A. Ghabrial, Jiatao Xie

Plant Pathology Faculty Publications

Mycoviruses have been detected in all major groups of filamentous fungi, and their study represents an important branch of virology. Here, we characterized a novel double-stranded RNA (dsRNA) mycovirus, Sclerotinia sclerotiorum megabirnavirus 1 (SsMBV1), in an apparently hypovirulent strain (SX466) of Sclerotinia sclerotiorum. Two similarly sized dsRNA segments (L1- and L2-dsRNA), the genome of SsMBV1, are packaged in rigid spherical particles purified from strain SX466. The full-length cDNA sequence of L1-dsRNA/SsMBV1 comprises two large open reading frames (ORF1 and ORF2), which encode a putative coat protein and an RNA-dependent RNA polymerase (RdRp), respectively. Phylogenetic analysis of the RdRp domain …

Biochemical, Physiological, And Anatomical Insights Into Aphid-Bioenergy Switchgrass Interactions, Travis J. Prochaska

Department of Entomology: Dissertations, Theses, and Student Research

Switchgrass, Panicum virgatum L., a perennial, warm-season grass native to North America, is a candidate for development as a bioenergy crop. Previously, warm-season grasses were considered to be relatively pest free in their native habitats. However, recent studies using the hemipteran family Aphididae have shown phloem-feeding insects can lead to significant injury in switchgrass. The objectives of this research were to: 1) gain physiological, biochemical, and anatomical insights into insect-bioenergy switchgrass interactions to determine potential insect resistance mechanisms among susceptible and resistant switchgrass genotypes; and 2) to generate and evaluate diverse segregating populations of switchgrass, both resistant and susceptible, to …

Once Again, My Epiphyllum: Hope, Joy And Excitement, Wenling Ma

Librarian Publications

Wenling Ma describes the second flowering of her Epiphyllum in August 2015.