Digital Commons Network^™

Nebline, January 2017

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: Extension 2016 Highlights

Food & Health

Farm & Acreage

Horticulture

Pests & Wildlife

4-H & Youth

Early Childhood

and other extension news and events

Winter Wheat Variety Trial Archive, John Rickertsen, Robert Hall, Amir Ibrahim, Kevin Kirby, Thandiwe Nleya, Bruce Swan, Steve Kalsbeck, Bill Berzonsky, Nathan Mueller, Christopher Graham, Shaukat Ali, S. M. Hawks

SDSU Extension Publications Archive

Crop performance testing results are released annually through the activities of SDSU Extension and the South Dakota Agricultural Experiment Station at SDSU.

High Resolution Land Cover Of Kansas (2015; Dataset), Darci A. Paull, Jakob W. Whitson, Abbey L. Marcotte, Greg C. Liknes, Dacia M. Meneguzzo, Todd A. Kellerman

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

This data publication contains 2015 high-resolution land cover data for each of the 105 counties within Kansas. These data are a digital representation of land cover derived from 1-meter aerial imagery from the National Agriculture Imagery Program (NAIP). There is a separate file for each county. Data are intended for use in rural areas and therefore do not include land cover in cities and towns. Land cover classes (tree cover, other land cover, water, or city/town) were mapped using an object-based image analysis approach and supervised classification.

An 18s Rdna Perspective On The Classification Of Criconematoidea, Thomas O. Powers, Timothy Harris, Rebecca Higgins, Peter Mullin, Kirsten Powers

Department of Plant Pathology: Faculty Publications

In the nematode family Criconematidae, a taxonomy primarily based on cuticle characters has created classifications that are notoriously volatile. Molecular characters may lead to their stabilization. A phylogenetic tree of Criconematoidea was constructed using 166 new near full-length 18S rDNA sequences and 58 sequences from GenBank. Bayesian and maximum likelihood (ML) analyses produced trees with similar topologies. Major features include a strongly supported clade that includes Criconematidae and Hemicycliophoridae, excluding Paratylenchidae and Tylenchulidae. Another well-supported clade groups Criconema, Ogma, Crossonema, and Hemicriconemoides plus Xenocriconemella, combining nematodes with cuticular scales with those without scales at any life stage. Mesocriconema, Discocriconemella limitanea, …

Interactions Between White-Tailed Deer Density And The Composition Of Forest Understories In The Northern United States, Matthew B. Russell, Christopher W. Woodall, Kevin M. Potter, Brian F. Walters, Grant M. Domke, Christopher M. Oswalt

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Forest understories across the northern United States (US) are a complex of tree seedlings, endemic forbs, herbs, shrubs, and introduced plant species within a forest structure defined by tree and forest floor attributes. The substantial increase in white-tailed deer (Odocoileus virginianus Zimmerman) populations over the past decades has resulted in heavy browse pressure in many of these forests. To gain an objective assessment of the role of deer in forested ecosystems, a region-wide forest inventory across the northern US was examined in concert with white-tailed deer density information compiled at broad scales. Results indicate that deer density may be …

Agroforestry: Enhancing Resiliency In U. S. Agricultural Landscapes Under Changing Conditions, Gary Bentrup, Michele M. Schoeneberger, Toral Patel-Weynand

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Agroforestry, the intentional integration of trees and shrubs into crop and animal production systems, is being deployed to enhance productivity, profitability, and environmental stewardship of agricultural operations and lands across the United States. This assessment provides a science-based synthesis on the use of agroforestry for mitigation and adaptation services in the face of climatic variability and change. It provides technical input to land-use sector issues in the National Climate Assessment (NCA) and serves as a framework for including agroforestry systems in agricultural strategies to improve productivity and food security and to build resilience in these landscapes. It also provides follow-up …

Vestured Pits In Echium (Boraginaceae): Island Woodiness Revisited, Sherwin Carlquist

Aliso: A Journal of Systematic and Floristic Botany

Vestured pits are present on pits of secondary xylem vessels of all studied Echium species, roots as well as stems. Variations in vesturing presence do occur in the genus (across wide circular pit cavities; along margins of elliptical pit apertures; aggregated to various degrees; variously abundant), but these are difficult to define precisely and are related primarily to organography and ecology rather than to the taxonomic system. The Macaronesian species have been reported to form a single clade. Wood anatomical features other than vesturing are also closely keyed to species ecology and, in particular subclades, growth forms. Woodiness, exemplified by …

Community Structure And Demography In A Saline Pan-Dune Mosaic In The Western Mojave Desert, M. Rasoul Sharifi, William N. Brostoff, Philip W. Rundel

Aliso: A Journal of Systematic and Floristic Botany

A unique saline ecological system formed by an extensive mosaic of small clay pans and low stable dunes exists within Edwards Air Force Base in the western Mojave Desert of California. This ecosystem lies between the large Rosamond and Rogers dry lakes on the old Pleistocene lakebed of Lake Thompson. Plant communities on the low and relatively stable dunes were broadly classed as saltbush scrub, with a total canopy cover of 30–36%. Atriplex confertifolia was the typical dominant, with Ericameria nauseosa as an important associate. Taller dunes of younger age and less saline soils had similar plant cover, but a …

Richness And Current Status Of Gymnosperm Communities In Aguascalientes, Mexico, María Elena Siqueiros-Delgado, Rebecca S. Miguel, José A. Rodríguez-Avalos, Julio Martínez-Ramírez, José C. Sierra-Muñoz

Aliso: A Journal of Systematic and Floristic Botany

The gymnosperm diversity of Aguascalientes, Mexico, is presented. Fifteen species from five genera and three families are reported, two of Coniferales (Cupressaceae and Pinaceae) and one of Gnetales (Ephedraceae). Pinus is the most diverse and abundant genus with seven species. The most abundant species is P. teocote, while P. strobiformis is the scarcest. Juniperus is the next most diverse genus, represented by four species, with J. deppeana the most abundant and J. durangensis the scarcest. Cupressus lusitanica, Taxodium mucronatum and Ephedra compacta are each the sole representatives of their genera. Most conifers occupy the mountainous part of the …

Shape Indexes For Semi-Automated Detection Of Windbreaks In Thematic Tree Cover Maps From The Central United States, Greg C. Liknes, Dacia M. Meneguzzo, Todd A. Kellerman

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Windbreaks are an important ecological resource across the large expanse of agricultural land in the central United States and are often planted in straight-line or L-shaped configurations to serve specific functions. As high-resolution (i.e., <5 m) land cover data sets become more available for these areas, semi-or fully-automated methods for distinguishing windbreaks from other patches of trees are needed for use with thematic raster data sets. To address this need, we created three shape indexes: a morphology-based index that we have named the Straight and Narrow Feature Index (SNFI), a windbreak sinuosity index, and an area index indicating the occupied fractional area of a bounding box. The indexes were tested in two study areas: (1) a riparian area dominated by sinuous bands of trees but mixed with row crop agriculture and (2) an agricultural area with a mix of straight-line and L-shaped windbreaks. In the riparian area, a Kruskall–Wallis rank sum test indicated class differences for all three indexes, and pairwise comparisons indicate windbreaks and riparian trees are separable using any of the three indexes. SNFI also produced significant differences between windbreaks oriented in different directions (east–west vs. north–south). In the agricultural area, the Kruskall–Wallis rank sum test indicated differences between classes for all three indexes, and pairwise comparisons show that all class pairs have significant differences for at least one index, with the exception of L-shaped windbreaks vs. non-windbreak tree patches. We also used classification trees to objectively assign representative samples of tree patches to classes using both single indexes and multiple indexes. Classes were correctly assigned for more than 90% of the samples in both the riparian and agricultural study areas. In the riparian area, combining indexes did not improve accuracy compared to using SNFI alone, whereas in the agricultural area, combining the three indexes produced the best result. Thematic data sets derived from high-resolution imagery are becoming more available, and extracting useful information can be a challenge, partly due to the large amount of data to assess. Calculating the three shape indexes presented can assist with efficient identification of candidate windbreaks and as such, hold good promise for value-added analysis of tree function in the central United States.

Enhancing Soybean Photosynthetic Co2 Assimilation Using A Cyanobacterial Membrane Protein, Ictb, William T. Hay, Saadia Bihmidine, Nedim Mutlu, Khang Le Hoang, Tala Awada, Donald P. Weeks, Thomas Clemente, Stephen P. Long

Center for Plant Science Innovation: Faculty Publications

Soybean C₃ photosynthesis can suffer a severe loss in efficiency due to photorespiration and the lack of a carbon concentrating mechanism (CCM) such as those present in other plant species or cyanobac-teria. Transgenic soybean (Glycine max cv. Thorne) plants constitutively expressing cyanobacterial ictB (inorganic carbon transporter B) gene were generated using Agrobacterium-mediated transformation. Although more recent data suggest that ictB does not actively transport HCO3-/CO2, there is nevertheless mounting evidence that transformation with this gene can increase higher plant photosynthesis. The hypothesis that expression of the ictB gene would improve photosynthesis, biomass production and seed yield in soybean …

A Multidomain Enzyme, With Glycerol-3-Phosphate Dehydrogenase And Phosphatase Activities, Is Involved In A Chloroplastic Pathway For Glycerol Synthesis In Chlamydomonas Reinhardtii, Daniela Morales-Sánchez, Yeongho Kim, Ee Leng Terng, Laura Peterson, Heriberto D. Cerutti

Center for Plant Science Innovation: Faculty Publications

Understanding the unique features of algal metabolism may be necessary to realize the full potential of algae as feedstock for the production of biofuels and biomaterials. Under nitrogen deprivation, the green alga C. reinhardtii showed substantial triacylglycerol (TAG) accumulation and up-regulation of a gene, GPD2, encoding a multidomain enzyme with a putative phosphoserine phosphatase (PSP) motif fused to glycerol-3-phosphate dehydrogenase (GPD) domains. Canonical GPD enzymes catalyze the synthesis of glycerol-3-phosphate (G3P) by reduction of dihydroxyacetone phosphate (DHAP). G3P forms the backbone of TAGs and membrane glycerolipids and it can be dephosphorylated to yield glycerol, an osmotic stabilizer and compatible …

Expression Of Cyanobacterial Fbp/Sbpase In Soybean Prevents Yield Depression Under Future Climate Conditions, Iris H. Köhler, Ursula M. Ruiz-Vera, Andy Vanloocke, Michell L. Thomey, Thomas Clemente, Stephen P. Long, Donald R. Ort, Carl J. Bernacchi

Center for Plant Science Innovation: Faculty Publications

Predictions suggest that current crop production needs to double by 2050 to meet global food and energy demands. Based on theory and experimental studies, overexpression of the photosynthetic enzyme sedoheptulose-1,7-bisphosphatase (SBPase) is expected to enhance C₃ crop photosynthesis and yields. Here we test how expression of the cyanobacterial, bifunctional fructose-1,6/sedoheptulose-1,7-bisphosphatase (FBP/SBPase) affects carbon assimilation and seed yield (SY) in a major crop (soybean, Glycine max). For three growing seasons, wild-type (WT) and FBP/SBPase-expressing (FS) plants were grown in the field under ambient (400 μmol mol⁻¹) and elevated (600 μmol mol⁻¹) CO₂ concentrations [CO …

Overexpression Of Sbmyb60 In Sorghum Bicolor Impacts Both Primary And Secondary Metabolism, Erin D. Scully, Tammy Gries, Nathan A. Palmer, Gautam Sarath, Deanna L. Funnell-Harris, Lisa Baird, Paul Twigg, Javier Seravalli, Thomas E. Clemente, Scott E. Sattler

Center for Plant Science Innovation: Faculty Publications

• Few transcription factors have been identified in C₄ grasses that either positively or negatively regulate monolignol biosynthesis.
• Previously, the overexpression of SbMyb60 in sorghum (Sorghum bicolor) has been shown to induce monolignol biosynthesis, which leads to elevated lignin deposition and altered cell wall composition. To determine how SbMyb60 overexpression impacts other metabolic pathways, RNA-Seq and metabolite profiling were performed on stalks and leaves.
• 35S::SbMyb60 was associated with the transcriptional activation of genes involved in aromatic amino acid, S-adenosyl methionine (SAM) and folate biosynthetic pathways. The high coexpression values between SbMyb60 and genes assigned to these pathways indicate …

Complete Mitochondrial Genomes From The Ferns Ophioglossum Californicum And Psilotum Nudum Are Highly Repetitive With The Largest Organellar Introns, Wenhu Guo, Andan Zhu, Weishu Fan, Jeffrey P. Mower

Center for Plant Science Innovation: Faculty Publications

• Currently, complete mitochondrial genomes (mitogenomes) are available from all major land plant lineages except ferns. Sequencing of fern mitogenomes could shed light on the major evolutionary transitions that established mitogenomic diversity among extant lineages.

• In this study, we generated complete mitogenomes from the adder’s tongue fern (Ophioglossum californicum) and the whisk fern (Psilotum nudum).

• The Psilotum mitogenome (628 kb) contains a rich complement of genes and introns, some of which are the largest of any green plant organellar genome. In the Ophioglossum mitogenome (372 kb), gene and intron content is slightly reduced, including the loss of …

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Plants With Useful Traits And Related Methods, Sally Ann Mackenzie, Roberto De La Rosa Santamaria

Center for Plant Science Innovation: Faculty Publications

The present invention provides methods for obtaining plants that exhibit useful traits by transient suppression of the MSH1 gene of the plants. Methods for identifying genetic loci that provide for useful traits in plants and plants produced with those loci are also provided. In addition, plants that exhibit the useful traits, parts of the plants including seeds, and products of the plants are provided as well as methods of using the plants.

Conventional And Unconventional Ubiquitination In Plant Immunity, Bangjun Zhou, Lirong Zeng

Center for Plant Science Innovation: Faculty Publications

Ubiquitination is one of the most abundant types of protein post-translational modification (PTM) in plant cells. The importance of ubiquitination in the regulation of many aspects of plant immunity has been increasingly appreciated in recent years. Most of the studies linking ubiquitination to the plant immune system, however, have been focused on the E3 ubiquitin ligases and the conventional ubiquitination that leads to the degradation of the substrate proteins by the 26S proteasome. By contrast, our knowledge about the role of unconventional ubiquitination that often serves as non-degradative, regulatory signal remains a sig- nificant gap. We discuss, in this review, …

Lilley Cornett Woods Plot Information And Topography Data, Ryan W. Mcewan, Julia I. Chapman, Robert N. Muller

Data Files: Big Everidge Hollow Permanent Plots

Plot information and topography data collected in the Big Everidge Hollow portion of the Lilley Cornett Woods Appalachian Ecological Research Station in southeastern Kentucky. Data key is provided in a supplemental file.

DOI: https://doi.org/10.26890/lcw.d9c9c1a2t4

Impact Of Ground Water Depletion On The Mesquite Community At Edwards Air Force Base, Western Mojave Desert, California, Jonathan E. Campbell, M. Rasoul Sharifi, Philip W. Rundel

Aliso: A Journal of Systematic and Floristic Botany

Edwards Air Force Base (EAFB) provides a habitat refugium for mesquite woodlands in the western Mojave Desert of the Antelope Valley. Although many mesquite communities in the arid southwest are considered invasive as they reduce the extent of grazing lands, the community at EAFB is composed primarily of large, widely spaced trees that provide food and shelter for local wildlife species and recreational opportunities for base personnel. Unfortunately, the range of these mesquite trees appears to be contracting as mature and old individuals dominate the community. Although anecdotal evidence suggests that the fall in the local groundwater table is responsible …

Quantifying Fish Habitat Associated With Stream Simulation Design Culverts In Northern Wisconsin, A. Timm, D. Higgins, J. Stanovick, R. Kolka, S. Eggert

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

This study investigated the effects of culvert replacement design on fish habitat and fish weight by comparing substrate diversity and weight at three stream simulation (SS)-design and three bankfull and backwater (BB)-design sites on the Chequamegon-Nicolet National Forest, Wisconsin. Stream channel cross-sections, Wolman substrate particle counts, and single-pass backpack electro-fishing survey data were used to quantify fish habitat and fish weight in 50-m upstream and downstream sample reaches at each site. We applied generalized linear mixed models to test the hypothesis that substrate size and fish weight did not differ according to stream-crossing design type (SS or BB) and location …

Developing A Parameterization Approach For Soil Erodibility For The Rangeland Hydrology And Erosion Model (Rhem), Osama Z. Al-Hamdan, Frederick B. Pierson, Mark A. Nearing, Christopher Jason Williams, Mariano Hernandez, Jan Boll, Sayjro K. Nouwakpo, Mark A. Weltz, Kenneth Spaeth

Articles

Soil erodibility is a key factor for estimating soil erosion using physically based models. In this study, a new parameterization approach for estimating erodibility was developed for the Rangeland Hydrology and Erosion Model (RHEM). The approach uses empirical equations that were developed by applying piecewise regression analysis to predict the differences of erodibility before and after disturbance (i.e., wildfire, prescribed fire, and tree encroachment) and across a wide range of soil textures as a function of vegetation cover and surface slope angle. The approach combines rain splash, sheet flow, and concentrated flow erodibilities into a single parameter for modeling erodibility …

Climate Dynamics, Invader Fitness, And Ecosystem Resistance In An Invasion-Factor Framework, Stephen L. Young, David R. Clements, Antonio Ditommaso

West Central Research and Extension Center, North Platte

As researchers and land managers increasingly seek to understand plant invasions and the external (climate) and internal (plant genetics) conditions that govern the process, new insight is helping to answer the elusive question of what makes some invasions successful and others not. Plant invasion success or failure is based on a combination of evolutionary and ecological processes. Abiotic (e.g., climate) and biotic (e.g., plant competition) conditions in the environment and plant genetics (e.g., fitness) combine in either decreasing or increasing invasion, yet it has proven challenging to know exactly which of these conditions leads to success for a given species, …

Beyond Precision Weed Control: A Model For True Integration, Stephen L. Young

West Central Research and Extension Center, North Platte

Precision means being exact and accurate and is an important management component for cropping systems. However, precision does not mean integration, which encompasses spatial and temporal dimensions and is a necessary practice rivaling precision. True IWM merges precision and integration by incorporating advanced technology that allows for greater flexibility of inputs and enhanced responsiveness to field conditions. Examples of this approach are non-existent due to a lack of suitable technological tools and a need for a paradigm shift. Herein a potential model startup company is offered as a guide to advance beyond precision weed control to true integration. The critical …

Effect Of Biochar Type And Size On In Vitro Rumen Fermentation Of Orchard Grass Hay, Zach D. Mcfarlane, Phillip R. Myer, Emily R. Cope, Neil D. Evans, T. Carson Bone, Bryan E. Bliss, J. Travis Mulliniks

West Central Research and Extension Center, North Platte

Biochar, a byproduct from the biofuels industry, may be a potential feed additive in ruminant diets due to possible improvements in microbial fermentation. Therefore, the objective of this study was to determine the nutritive value, in vitro digestibility, volatile fatty acid (VFA) production, and gas production of biochar inclusion to an orchard grass (Dactylis glomerata) basal diet. The study was designed as a 3 × 2 factorial arrangement with 3 different biochar sources and 2 biochar processed sizes as the main effects factors. Experimental treatments were biochar from 3 different tree types: 1) Chestnut Oak (Quercus prinus …

Supplemental Data, Russell J. Ingram, Foster Levy, Cindy L. Barrett, James T. Donaldson

ETSU Faculty Works

No abstract provided.

Fates Of Ovules In Groundplum Milk-Vetch (Astragalus Crassicarpus Nutt.) In South Dakota, Arvid Boe, Paul J. Johnson

Native Plant Focused Publications

Groundplum milk-vetch (Astragalus crassicarpus Nutt.) is a native legume found on gravelly to sandy prairie uplands throughout central North America. The large and fleshy fruits, or pods, of this species were consumed by indigenous people and European settlers, and are cached by rodents. Our previous research on native legumes of the northern Great Plains indicated seed predation by insects, notably bruchid beetles belonging to the genus Acanthoscelides Schilsky, was a dominant factor determining viable seed production in natural and artificial plant assemblages. However, although we have studied the reproductive biology of several species of Astragalus L., none had fleshy pods. …

Floristic Inventory Of Woollen’S Gardens Nature Preserve, Indianapolis, Marion County, Indiana, Usa, With Quantitative Vegetation Sampling Of Permanent Plots In 2003 And 2016, Rebecca W. Dolan, Marcia E. Moore

Scholarship and Professional Work - LAS

Urban forest fragments face challenges to habitat quality due to small size, isolation from larger natural areas, and close association with anthropogenic disturbance. Monitoring changes in vegetation can inform management practices targeted at preserving biodiversity in the face of these threats. Woollen’s Gardens is a high-quality mesic upland forest preserve in the city of Indianapolis, Indiana, USA, with a beechmaple older-growth forest and a significant display of showy spring wildflowers. The entire preserve was inventoried and quantitative vegetation analysis along seven 100 m transects was conducted in 2003 and again in 2016 to track changes. Data from both years document …

Results Of The 2016 Indianapolis Biodiversity Survey, Marion County, Indiana, Jeffrey D. Holland, Rebecca W. Dolan, Jeremy J. Sheets, Michael S. Finkler, Brant E. Fisher, Roger L. Hedge, Tom Swinford, Nick Harby, Robert P. Jean, Megan K. Martin, Bill Mcknight, Marc Milne, Kirk Roth, Paul Rothrock, Carl Strang

Scholarship and Professional Work - LAS

Surprising biodiversity can be found in cities, but urban habitats are understudied. We report on a bioblitz conducted primarily within a 24-hr period on September 16 and 17, 2016 in Indianapolis, Indiana, USA. The event focused on stretches of three waterways and their associated riparian habitat: Fall Creek (20.6 ha; 51 acres), Pleasant Run (23.5 ha; 58 acres), and Pogue’s Run (27.1 ha; 67 acres). Over 75 scientists, naturalists, students, and citizen volunteers comprised 14 different taxonomic teams. Five hundred ninety taxa were documented despite the rainy conditions. A brief summary of the methods and findings are presented here. Detailed …

Featured Herbarium: But—The Friesner Herbarium Of Butler University, Rebecca W. Dolan

Scholarship and Professional Work - LAS

Feature written by Rebecca Dolan on the BUT—The Friesner Herbarium of Butler University in the Vasculum.

Influence Of Mature Overstory Trees On Adjacent 12-Year Regeneration And The Woody Understory: Aggregated Retention Versus Intact Forest, Miranda T. Curzon, Susan C. Baker, Christel C. Kern, Brian J. Palik, Anthony W. D'Amato

Aspen Bibliography

No abstract provided.