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Balancing Root-Zone Oxygenation And Rhizosphere Stability: The Impact Of Aeration And Hypoxia On Hydroponic Plant Growth, Christian D. Baker

All Graduate Theses and Dissertations, Fall 2023 to Present

As the global population and food demand continue to increase, growers must look to innovative and sustainable methods for plant cultivation. Hydroponics is a popular method of sustainable plant cultivation where plant roots are suspended over a liquid nutrient solution. Hydroponics uses less water compared to traditional agriculture because there is no evaporation or solution runoff. It also maximizes land use, requires fewer pesticides and herbicides, and enables year-round cultivation in controlled environments. However, indoor hydroponic systems rely on artificial lighting, which has higher energy costs than traditional farming methods. Optimizing growing conditions is therefore critical to ensure long-term economic …

Growing South Dakota (Fall 2026), College Of Agriculture, Food And, Environmental Sciences

Growing South Dakota (Publication of the College of Agriculture, Food and Environmental Sciences)

[Page] 2 Support from donors helping set SDSU dairy graduates above the rest
[Page] 4 A decade of impact: Celebrating 10 years of cow-calf, swine education and research facilitates
[Page] 8 98-year-old donor keeps decades-long scholarship going in honor of late husband
[Page] 11 Looking back at Michele Dudash's tenure in academia
[Page] 12Giving students opportunities, experience to build their futures
[Page] 16 A Jackrabbit's journey in growing agricultural leadership
[Page] 18 Building South Dakota's next generation of rural veterinarians
[Page] 19 Conservation: A family affair
[Page] 20 South Dakota Water Resources Institute finds solutions to South Dakota's water challenges …

Harvest And Retting Method Alter The Composition Of Hemp Fiber For High Performance Concrete, Abigail Lazier, Jennifer Macadam, Srishti Banerji, Bruce Bugbee

Plants, Soils and Climate Student Research

Recently, the use of natural fibers in place of polymer fibers in high performance concrete has been explored for improved mechanical properties (including reduced spalling) and greater sustainability. This project aims to recycle biomass waste produced by the medical cannabis industry by using it in concrete. We have designed and conducted multiple studies to determine efficient methods for fiber harvest and processing from our in-house medical cannabis waste. Harvest method, (including fresh harvest and defoliation or physically induced senescence), storage condition, ( 4 C or 25 C), and processing technique, (mechanical or biological) were trialed. Additionally, we used standard forage …

High Tunnel Pollinators, Miranda L. Jones, Sheriden Hansen, Kelsey Graham, Robert Nelson Schaeffer, Brent Black

All Current Publications

High tunnels are used to extend the growing season. Unlike greenhouses, high tunnels are semi-permanent and not heated or cooled by a climate-control system. Instead, they use plastic sheeting to trap solar heat, allowing for season extension in temperate climates around spring and fall. Bee pollination can improve yields for several valuable crop species grown in high tunnels. Because high tunnels are largely enclosed, bees are typically released and managed within the structure. This fact sheet provides information on how to obtain and manage bee pollinators in high tunnels.

Involvement Of Melatonin In The Regulation Of Reactive Oxygen Species Levels In Plants, Bariş Uzi̇lday, Oğuzhan Yilmaz, Tolga Yalçinkaya, Zehra Özgecan Tanyolaç, İsmai̇l Türkan, Rengi̇n Özgür Uzi̇lday

Turkish Journal of Botany

Abiotic stress conditions impair plant metabolism partly by inducing the excessive production of reactive oxygen species (ROS). Melatonin, a multifunctional indoleamine, has emerged as an important regulator of plant responses to oxidative stress. This review highlights recent findings on the interactions among phytomelatonin, ROS homeostasis, antioxidant metabolism, photosynthetic protection, stress priming, and abiotic stress tolerance. We discuss how melatonin modulates the antioxidative response under diverse stress conditions and evaluate its effects on photosynthetic performance, ROS signaling, and membrane stability. Special attention is given to priming studies showing that melatonin pretreatment can improve stress tolerance. Emerging evidence from plant tissue culture …

Complete Chloroplast Genome Analysis Of Critically Endangered Endemic Prangos Denticulata And Insights Into Its Evolutionary Dynamics, Ayşenur Bozkurt, Doğa Seli̇n Kayihan, Hali̇s Batuhan Ünal, Ceyhun Kayihan

Turkish Journal of Botany

Prangos denticulata (Apiaceae) is a critically endangered and narrowly endemic species restricted to Ankara, Türkiye. To provide genomic resources for its conservation and evolutionary study, we sequenced, assembled, and annotated its complete chloroplast genome using short-read next-generation sequencing. The circular plastome was 153,486 bp in length, exhibiting the typical quadripartite structure with a large single-copy (86,440 bp), small single-copy (17,894 bp), and two inverted repeats (49,152 bp), and an overall GC content of 37.8%. A total of 116 genes were identified, including 92 protein-coding, 31 tRNA, and 5 rRNA genes, of which 20 contained introns. Comparative analyses with P. trifida, …

Drought Priming Improves Waterlogging Tolerance In Alfalfa, But Less Effectively Than Waterlogging Priming, Gürkan Demi̇rkol, Ni̇lüfer Kara

Turkish Journal of Botany

Waterlogging severely restricts growth and productivity in alfalfa (Medicago sativa L.), necessitating effective strategies to improve stress tolerance. This study investigated whether drought priming or waterlogging priming could enhance tolerance to subsequent waterlogging stress in the alfalfa cultivar “Bilensoy-80”. Plants were subjected to drought priming, waterlogging priming, or no priming prior to progressive waterlogging stress for 0, 4, 8, 12, 16, and 20 days. Waterlogging priming consistently alleviated growth inhibition, maintained chlorophyll content, and reduced oxidative damage under prolonged stress. Drought priming was associated with partial cross-tolerance, particularly through improved root growth, plant water status, and oxidative stress responses, although …

Red Light Accelerates Adventitious Root Primordium Initiation And Differentiation In Phoebe Bournei Cuttings By Modulating Auxin Signaling And Hormonal Balance, Yuewang Niu, Yuanyang Bi, Chenyu Gong, Shipin Chen

Turkish Journal of Botany

Adventitious root formation in stem cuttings of Phoebe bournei, an economically and ecologically significant woody species, is a major bottleneck in clonal propagation. To elucidate the impact of spectral quality on early adventitious root development, we characterized the morphological, hormonal, and transcriptomic dynamics of primordium initiation and differentiation under white, red, and blue light. Under red light, cuttings exhibited the earliest and most pronounced formation of white filamentous structures at lenticels, indicative of root primordium initiation, as early as 20 days after cutting, whereas white and blue light treatments showed delayed responses. Paraffin section analysis confirmed the induced origin of …

Irrigation Management With A Field Water Balance And Virus Incidence In Dahlia Cut Flowers, Chloe Seeborg, Melanie Stock, Claudia Nischwitz, Xin Dai, Cambry Adams, Burdette Barker

Plants, Soils and Climate Student Research

Irrigation guidelines are needed for the field production of emerging specialty crops to support the sustainability and economic viability of small farms. The goal of this study was to establish crop coefficients (K_c) of dahlia (Dahlia × hybrida), a popular, profitable cut flower crop, while documenting virus infection. A two-year field study was conducted with two industry-important cultivars that vary in production timing and bloom: ‘Boom Boom White’, an earlier and mid-sized formal decorative, and ‘Café au Lait’, a later and large informal decorative bloom type. A field water balance was used to evaluate five irrigation …

Analysis Of Diterpenoid Alkaloids From American Aconitum Using Lc-Ms Metabolomic Methods, Yi Zhao

Dissertations, Theses, and Capstone Projects

Analysis of Diterpenoid Alkaloids from American Aconitum Using LC-MS Metabolomic Methods

by

Yi Zhao

Advisor: Edward J. Kennelly

Aconitum plants have been used as a traditional medicine in Asian countries for millennia to treat pain, rheumatism, syncope, fever, and other conditions. These therapeutic effects are mainly due to the bioactive diterpenoid alkaloids accumulated in the roots. Comparing with the large records and studies of Asian Aconitum and their medicinal use and the broad bioactive compounds, American Aconitum has been rarely investigated, not to mention how American Aconitum has been used medicinally. Based on previous phylogenetic and chemotaxonomic studies of Aconitum …

Organic Pesticides: A General Overview, Marion Murray, Ann Mull

All Current Publications

Organic pesticides are naturally occurring, nonsynthetic, or minimally processed substances that control unwanted organisms in the environment. Categories include insecticides, herbicides, fungicides, and miticides.

American Plum Borer In Utah Orchards (Euzophera Semifuneralis), Emilie Demard, Marion Murray, Claudia Nischwitz

All Current Publications

This fact sheet provides information on American plum borer in Utah orchards, also known as APB. This pest primarily damages fruit trees. APB moths were detected in traps in 2026, but to date, no tree damage has been found. This fact sheet discusses hosts, identification, and management methods.

Visualizing 25 Years Of Change In The Glades Oak Savanna, Zoe Fieberg

Summer Research Showcase

Oak savannas represent one of the most threatened ecosystems in Minnesota due to changing land use management, particularly absence of fire (Davis, 2001). Frequent burns kill fire-sensitive mesophytic tree species, reducing the dominance of woody understory and allowing for restoration of the oak savanna environment. The GLADES (Grid for Landscape Analysis and Demographic Study) site was established in 1988 in East Bethel, Minnesota to study the effect of frequent burning on oak savanna restoration. Through the use of standardized methods of photography, we compared canopy differences across GLADES between 2001 and 2026. Preliminary observations revealed increased canopy density and reduced …

Nasa’S Ecostress Satellite Reveals Widespread Midday Depression In Ecosystem Evapotranspiration, Jingyi Bu, Jingfeng Xiao, Joshua B. Fisher, Yiqi Luo

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Plants often exhibit a midday depression in water use (i.e., transpiration), reflecting a constraint on their ability to sustain maximum water transport, which may occur at the cost of reduced photosynthesis. Eddy covariance observations and geostationary satellites cannot quantify this widespread phenomenon globally while resolving fine-scale spatial variability. Using evapotranspiration measurements from the ECOsystem Spaceborne Thermal Radiometer Experiment on Space Station (ECOSTRESS) and machine learning, we quantify the global distribution of midday depression in evapotranspiration. Midday depression primarily occurs during peak-growing seasons in temperate zones and dry periods in the tropics, with a morning shift of the peak evapotranspiration time …

Beyond Better Conditions: Seaweed Farming And The Number Of Sentient Animals In Aquaculture, Shrilaxmi Patil, Matthew Unerman, Wasseem Emam

Animal Sentience

Oldfield & Bonano (2024) (O&B) document how far  fish welfare research lags behind welfare research in other animals. We share O&B’s feelings-based concept of welfare and agree that aquaculture seeded this field; but research volume has not scaled with animal numbers: Welfare attention per farmed fish or decapod remains negligible. Along the lines of preceding commentaries (Maia 2024, Mather 2024), we treat farmed aquatic animals as individuals rather than tonnage. We then raise a point so far absent from the commentary on O&B so far: reducing the number of sentient animals entering intensive systems. Coastal seaweed farming, which cultivates non-sentient …

The Invisible Crop: Harnessing Root System Architecture In Heirloom Collards For Climate-Resilient Urban Agriculture, Vincent Antonio Brazelton

Arts & Sciences Graduate Student Theses and Dissertations

Growing food in urban spaces often means working within variable, resource-limited environments, creating a need for crops that can withstand heterogeneous growing conditions. Heirloom collards (Brassica oleracea var. viridis) are known for their aboveground diversity and cultural importance, but much less is known about the variation that exists belowground. This dissertation examines root system architecture (RSA) diversity across 19 historically underutilized heirloom collard accessions using a multi-scale phenotyping approach that includes controlled gel-based imaging of seedlings and 2D imaging of mature field-grown root systems. Across both seedling and mature stages, heirloom collards showed substantial variation in RSA. These differences revealed …

The Effectiveness Of Bacillus-Coated Npk Fertilizer On Broccoli Growth, Nutrient Status, Rhizosphere Bacillus Population, Yield, And Flower Quality, Betty Natalie Fitriatin, Rara Rahmatika Risanti, Reginawanti Hindersah, Fasa Aditya Hanindipto, Gita Bina Nugraha

Jurnal Kultivasi

Efforts to increase the availability of macronutrients in soil have relied on inorganic fertilization, particularly NPK fertilizers. However, global challenges in the fertilizer raw material supply chain, including price fluctuations and availability, are driving the need for more efficient and sustainable fertilizer alternatives. The field experiment was conducted in Baruajak, Lembang District, West Java, Indonesia, to evaluate the effectiveness of Bacillus-coated NPK fertilizer on broccoli (Brassica oleracea var. italica) growth, nutrient status, rhizosphere Bacillus population, yield, and flower quality. The experiment used a randomized complete block design with 15 fertilizer treatments and three replications. Treatments consisted of two coated NPK …

The Effect Of Pre- And Post-Emergence Herbicide On Weeds And Rice Yield In The Direct Seeding System, Uum Umiyati, Denny Kurniadie, Fauzi

Jurnal Kultivasi

Indonesian rice production has been unable to fully meet national demand, partly due to weed competition, which can reduce rice yields by up to 80% if left uncontrolled. This study aimed to evaluate the effectiveness of pre-emergence herbicides containing pretilachlor (300 g/L) and post-emergence herbicides containing cyhalofop + ethoxysulfuron (330 g/L) for weed control in direct-seeded rice, and to determine the optimal dosage. Herbicides active ingredient is pretilachlor are a category of pre-emergence herbicides used in rice cultivation; these herbicides are systemic and are used to control sedges, grasses and broadleaf weeds. The cyhalofop + ethoxysulfuron herbicide is a post-emergence …

Genetic Diversity And Rhizome Flesh Color Variation Among Indonesian Turmeric (Curcuma Longa L.) Accession Revealed By Ssr Markers, Suseno Amien, Marisa Anggraeni, Agung Karuniawan, Noladhi Wicaksana

Jurnal Kultivasi

Turmeric (Curcuma longa L.) is a rhizomatous plant widely cultivated in Indonesia. Although recent studies have demonstrated that simple sequence repeat (SSR) markers are highly effective for assessing genetic diversity in Curcuma longa germplasm, most investigations have focused either on molecular diversity or breeding-oriented germplasm characterization traits of agronomic without integrating phenotypic commercial importance, particularly rhizome flesh color. The study was conducted from February to May 2026. This study aimed to evaluate the genetic diversity, phylogenetic relationships, and rhizome flesh color variation among Indonesian turmeric accessions collected by Plant Breeding Laboratory at the Faculty of Agriculture, Universitas Padjadjaran, and was …

The Effect Of Silica-Enriched Rice Husk Biochar And Npk Fertilizer On Soil Total Nitrogen, Nitrogen Uptake, And Yield Of Lowland Rice, Emma Trinurani Sofyan, Oviyanti Mulyani, Ania Citraresmini, Meddy Rachmadi, Kharmelia Sandra Livia

Jurnal Kultivasi

Rice production in Indonesia increasingly relies on agricultural intensification, which can accelerate soil degradation and reduce fertilizer-use efficiency. Therefore, sustainable soil management is needed to maintain soil fertility. Silica-enriched rice husk biochar (biochar-silica) is a promising soil amendment because it improves soil properties and nutrient retention. This study evaluated the effects of biochar-silica and NPK fertilization on soil total nitrogen, nitrogen uptake, and yield of lowland rice (Oryza sativa L.). The experiment was conducted from September 2025 to January 2026 using a two-factor randomized block design with nine treatment combinations and three replications. The treatment consisted of three levels of …

Differential Effects Of Thiamine, Bap, And Thidiazuron Combinations On Shoot Multiplication And Phenolic-Flavonoid Accumulation In Pineapple In Vitro Cultures, Dinda Septia Rachman, Erni Suminar, Anne Nuraini, Fiky Yulianto Wicaksono, Suseno Amien, Syariful Mubarok, Hermanto

Jurnal Kultivasi

The demand for high-quality pineapple (Ananas comosus (L.) Merr.) planting materials continues to increase, while conventional propagation methods are limited in multiplication rate, uniformity, and production efficiency. In vitro culture offers an alternative approach for rapid and large-scale seedling production. However, information on the effects of thiamine and cytokinin combinations on both shoot multiplication and phenolic-flavonoid accumulation in pineapple in vitro remains limited. This study evaluated ten defined combinations of thiamine and cytokinin for shoot multiplication and total phenolic-flavonoid contents of pineapple explants. The experiment employed a completely randomized design with 10 treatment combinations of thiamine (0.1 and 0.4 mg/L), …

Metabolic Dynamics Of Secondary Metabolites In Arabica Coffee (Coffea Arabica): From Biosynthesis To Post-Harvest Transformations, Kamilrashid Hadi Dwitama, Yudithia Maxiselly, Cucu Suherman, Santi Rosniawaty

Jurnal Kultivasi

Coffee (Coffea arabica) is a globally significant beverage whose sensory profile and physiological effects derive from a complex matrix of secondary metabolites. This review presents a comprehensive "lifecycle" perspective of three pivotal classes: the alkaloid caffeine, phenolic chlorogenic acids (CGA), and the diterpenoids cafestol and kahweol. Here, 'lifecycle' defines a metabolite's continuous biochemical trajectory, tracking its genetic origin and ecological function in the plant through structural modifications during fermentation, drying, storage, and roasting. These classes are highlighted because they serve as the primary drivers of bitterness, acidity, and health bioactivities with fundamentally distinct transformational pathways. Following a systematic methodology, this …

Performance Of Dual-Form Terminalia Catappa Organic Fertilizers On Sweet Corn Yield And Economic Viability In Tropical Highlands, Stefina Liana Sari, Eso Solihin, Rahmat Budiarto

Jurnal Kultivasi

Recycling underutilized plant biomass into organic fertilizers underpins low-input cropping strategies, but liquid and solid formulations derived from a common feedstock have seldom been evaluated side by side under field conditions. This study aimed to (i) characterize the physicochemical properties and safety profile of a liquid organic fertilizer (LOF) and a crumb-type organic fertilizer (COF) co-produced from Terminalia catappa leaf compost, (ii) compare their effects on sweet corn growth and yield, (iii) determine relative agronomic effectiveness (RAE), and (iv) evaluate economic feasibility of the most promising organic–inorganic combinations. We produced LOF and COF through aerobic composting of Terminalia catappa leaves …

The Effects Of Melatonin And Potassium Fertilizer On Fruit Yield And Quality Of ‘Haruhi’ Strawberry Under Two Light Conditions, Ghaida Marsha Nurizqia, Farida, Reginawanti Hindersah, Kenji Endo, Rahmat Budiarto, Syariful Mubarok

Jurnal Kultivasi

Strawberry (Fragaria × ananassa) ‘Haruhi’ is a subtropical plant that is being cultivated in Indonesia. High temperatures in tropical climates could decrease strawberry yield and fruit quality. The purpose of this study was to evaluate the effect of light, melatonin, potassium fertilizers, and their interactions on the yield and fruit quality of ‘Haruhi’ strawberry. This research was conducted from April to June 2024 at the Bale Tatanen, Faculty of Agriculture, Universitas Padjadjaran. A split-plot design was used, with lighting treatment as the main plot and melatonin and potassium fertilizer treatments as the subplot. Lighting treatments consisted of supplemental LED lighting …

Modeling The Clonal Rosette Composition Of A Bromeliaceae Genet: A Combinatorial Approach, Layla K. Lammers, Erin N. Bodine

Spora: A Journal of Biomathematics

Bromeliaceae, a neo-tropical plant family encompassing over 3,000 species, exhibit two modes of reproduction: sexual reproduction via flowers and seeds, and asexual reproduction via genetically identical clonal rosettes. The vegetative bodies of bromeliads form rosettes with new leaves emerging from the center and clonal rosettes emerging above a single leaf in the rosette, resulting in a genetic individual consisting of a seed-grown rosette and multiple iterations of clonal rosettes. This research develops a combinatorial model of probability that a single genetic individual will include at least n clonal rosettes when a single rosette can produce at most 1 or 2 …

Oregon State Rank Assessment For Deer-Cabbage (Nephrophyllidium Crista-Galli), Lindsey K. Wise

Institute for Natural Resources Publications

Oregon state conservation status assessment for Deer-cabbage (Nephrophyllidium crista-galli) using NatureServe methodology, 2026.

Dry After-Ripening Increases Germination Of Critically Imperilled Physaria Thamnophila (Zapata Bladderpod), Christopher A. Gabler, Jerald T. Garrett

School of Earth, Environmental, & Marine Sciences Faculty Publications

Effective endangered plant conservation and recovery require empirical knowledge of seed dormancy release and responses to post-collection handling, yet such information is lacking for many rare taxa. Physaria thamnophila (Zapata bladderpod; Brassicaceae), a critically imperilled (G1) species endemic to southern Texas, USA, is poorly studied, and basic questions regarding seed storage and germination remain unresolved. We evaluated the effects of short-term cool-storage duration (14–180 d), storage temperature (refrigeration vs. freezing), dry after-ripening and maternal plant identity on germination probability and timing in P. thamnophila. Dry after-ripening and increased cool-storage duration consistently increased germination and shortened germination time, whereas storage temperature …

High Biochar Rate Improves Water Retention In Some Environmentally Sensitive Soils, Samundra Sigdel

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Improving water retention and other hydraulic properties is key to managing soil water and sustaining crop production under fluctuating and extreme weather events. We assessed how wood biochar (836 g C kg^-1) applied at 0, 6.25, 12.5, 25, and 50 Mg ha^-1 affected: i) soil hydraulic properties after 5 years and ii) corn and soybean yield, and biomass production of cereal rye cover crop (CC) and CC mix (cereal rye, radish, and winter pea) in sandy, sloping, and semi-arid soils in the central U.S. Great Plains over 6 years. Biochar affected field saturated hydraulic conductivity (K_{sat …}

Land Condition Standards For The Western Australian Nullarbor Pastoral Region, Peter-Jon A. Waddell, Wayne J. Fletcher

Natural resources published reports

This report outlines the quantitative land condition standards that define acceptable pastoral land condition for the Western Australian part of the Nullarbor, to meet the regulatory requirements of the Land Administration Act 1997 and the Soil and Land Conservation Act 1945.

The Department of Primary Industries and Regional Development is developing regional-level pastoral land condition standards for Western Australia as a critical component of the Framework for sustainable pastoral management – revised edition (Fletcher 2022), the purpose of which is to address the Office of the Auditor General’s recommendations to improve the management of pastoral lands in WA …

A Genetic Analysis Of The Rare Endemic Astragalus Ripleyi Barneby, Juan Antonio Jaramillo-Chico

Master's Theses

Astragalus ripleyi Barneby is a rare endemic species found in the San Luis Valley of the southern portions of the Rocky Mountains in Colorado and New Mexico. Though not federally listed as endangered, the species is on the Bureau of Land Management’s Sensitive Species List, warranting protection and continued management. This study aims to provide information about the genetic health of the species to inform conservation efforts and provide updated management recommendations. A genetic health analysis was conducted investigating the levels of diversity present in the species, how genetic diversity is structured across the known range of the species and …