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Selective Indel Marker Identification Across The Peanut (Arachis Hypogaea L.) Genome Using Ddradseq, Moin Qureshi, Bi̇rgül Guden, Hi̇lal Şule Tosun, Mojtaba Kordrostami, Sunil Shiwaji Gangurde, Bülent Uzun, Engi̇n Yol

Turkish Journal of Botany

The advent of next-generation sequencing technologies, mainly double digest restriction site-associated DNA sequencing (ddRADSeq), has significantly advanced the development of molecular markers for crop genetics. This study used ddRADSeq to identify and develop insertion-deletion (InDel) markers in 25 peanut genotypes from diverse geographic regions. The bioinformatic analysis unveiled 62728 InDels across the peanut genome, predominantly between 1-5 bp, which constituted 96% of the total, while InDels of ≥ 6 bp accounted for 3.96%. We focused on 1013 InDels of at least 10 bp for further analysis, representing 1.61% of the total reads, with a distribution of 832 insertions and 181 …

Comparing Multivalent Cross-Linked Sodium Alginate/ Montmorillonite Beads Containing Curcumin Or Cayenne Pepper As Drug Carriers And Their Antimicrobial Resistance, Shionainn Traynor, Shubham Sharma

SURE Journal: Science Undergraduate Research Experience Journal

The aim of the following work was to investigate and compare curcumin and cayenne pepper in microbeads composed of sodium alginate (SA) crosslinked with montmorillonite (MMT) to act as drug carriers and their antimicrobial resistance. The microbeads were prepared through ion-exchange in multivalent solutions of CaCl₂, MgCl₂ and AlCl₃. The microbeads were characterized by Scanning Electron Microscopy (SEM), Energy Dispersive X-ray analysis (EDX) and the time required for intercalation of curcumin and cayenne pepper with MMT. Simulated intestinal fluid (pH 7.3) and gastric fluid (pH 1.2) at 37°C were used for comparison in swelling studies. …

Editorial - Sure Journal Vol 6, Anne M. Friel, Eva Campion, Sinead Loughran

SURE Journal: Science Undergraduate Research Experience Journal

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Phosphorus Buffering Determines How Soil Properties And Rainfall Influence Wheat (Triticum Aestivum) Yield Response To Phosphorus Fertiliser, Craig Scanlan, Raj Malik, Gustavo Boitt, Mark Gherardi, James Easton, Zed Rengel

Grain and Other Field Crops Research Articles

Context

Current decision support systems (DSS) for phosphorus (P) fertiliser were developed using data from historical cropping systems. An understanding of how soil properties and rainfall influence wheat (Triticum aestivum) response to P fertiliser in current systems is required to optimise P management. Aims

The aims of this study were to: (1) assess the soil properties that have the greatest influence on relative yield; (2) examine how rainfall conditions influence relative yield; and (3) examine whether there were interactive effects between rainfall and soil properties on relative yield. Methods

Forty P rate-response field experiments were completed in Western …

Farmers’ Decision Processes About Biocontrol Innovation Adoption: Dynamics Surrounding Push-Pull Technology In Western Kenya, Olufemi Samson Adesina, Stephen Whitfield, Susannah M. Sallu, Steven M. Sait, Jimmy Pittchar

All Peer-Reviewed Publications

Smallholder farmers in sub-Saharan Africa (SSA) face increasing challenges from pests and climate change, among other issues. In response to these challenges, international agricultural research for development (R4D) investment is often focused on developing and scaling up techniques and technologies that bolster resilience. However, such approaches are often technocentric and follow linear assumptions of innovation diffusion and adoption, which overlook the complex realities that influence smallholder farmers’ dynamic decisions and engagement with novel techniques. This study used qualitative ethnographic methods to explore the experiences, knowledge construction, motivations, and decision-making of farmers in Western Kenya regarding the extensively researched push-pull technology …

The Role Of Nutrient Solutions On Phosphate-Solubilizing Bacteria Population, Phosphorus Availability, Phosphorus Uptake, Growth And Yield Of Red Chili (Capsicum Annuum L.), Betty Natalie Fitriatin, Raden Faqih Hilmiy Ghifari, Emma Trinurani Sofyan, Fitri Widiantini, Hanif Fakhrurroja, Tualar Simarmata

Jurnal Kultivasi

Red chili consumption in Indonesia has increased every year. However, with large chili production to meet large consumption, land conversion for various purposes has reduced the harvested area. The efforts to increase the harvested area of chili using Inceptisols soil by providing nutrient solutions to overcome the infertility of the soil using its nutrients. This experiment aims to determine the effect of nutrient solution application on the population of phosphate-solubilizing bacteria, phosphorus availability, phosphorus uptake, growth, and yield of Red Chili (Capsicum annuum L.) in Inceptisols. The experiment was conducted from August 2023 to February 2024 at Ciparanje Experimental Field, …

Impacts Of Gibberellin Application On Citrus: An Overview From Seed Germination To Fruit Quality Enhancement, Siti Auliya Rahma, Rahmat Budiarto, Syariful Mubarok, Supatida Abdullakasim

Jurnal Kultivasi

Gibberellins are key plant hormones, and their application in citrus plants is frequently reported. This review aims to provide an overview of the application of gibberellic acid (GA3) in citrus cultivation, emphasizing their effects on growth, flowering, fruit quality, and ripening. Citrus fruits often face challenges like irregular fruit set, size inconsistency, and environmental stress, impacting yield and profitability, with exogenous gibberellin application as a potential solution. Applying gibberellins can accelerate citrus seed germination and seedling growth, enhance vegetative growth, inhibit flowering, delay fruit ripening, and improve fruit quality. However, the efficacy of gibberellins varies across species and conditions, highlighting …

Evaluation Of Soybean (Glycine Max L.) Seed Inoculation With Bradyrhizobium Japonicum And Bacillus Subtilis On Yield And Root System Architecture: A Herbicide Carryover Perspective, Ncomiwe Andile Maphalala

Theses and Dissertations

Reducing herbicide carryover in soybean production is imperative to sustain future soybean cropping systems in Mississippi and the rest of the world. This research was conducted to determine the response of inoculated soybean to corn (Zea mays L.) residual herbicides. The herbicide treatments included aatrex (atrazine), callisto (mesotrione), lexar (atrazine+mesotrione+s-metolachlor), and steadfast (nicosulfuron+rimsulfuron) at 100%, 75%, 50%, and 25% of the total label rate. Inoculant treatments were Bradyrhizobium japonicum, Bacillus subtilis, and no inoculant. Bacterial inoculants positively impacted most shoot and root growth parameters, significantly increasing depending on the herbicide x inoculant treatment combination and its rate. B.japonicum alone and …

Jovial Family Farm Facilitates Intergenerational Learning Opportunities Through Urban Farming, Maera Williams

Purdue Journal of Service-Learning and International Engagement

Maera Williams is a sophomore in Environmental and Ecological Engineering at Purdue University. She joined the Engineering Projects in Community Service (EPICS) Urban Farming team as a freshman and now serves as project manager of ten undergraduate students collaborating with Jovial Family Farm to design and develop three indoor hydroponics systems for a laboratory space on their property in Broad Ripple, IN. Jovial Family Farm is a nonprofit organization founded by Drs. Bobbie and Brian Jellison with the mission to provide senior citizens, their families, and their communities with meaningful engagement opportunities on an intergenerational scale through urban agricultural activities. …

Yield Comparison Of Three Melon (Cucumis Melo L.) Varieties Cultivated With Dutch Bucket And Drip Irrigation Systems, Widiya Puji Kumalasari, Suwarto, Etik Wukir Tini, Endang Warih Minarni

Jurnal Kultivasi

Melon is one of the horticultural commodities with considerable economic potential. Cultivation through hydroponic systems can provide efficiency and increase production if complemented by superior varieties. This study aims to identify the best hydroponic system and melon variety combination with the highest yield. The research was conducted from November 2023 to April 2024 at the screen house in Pasir Kulon Village, Karanglewas District, Banyumas Regency, at 110 m above sea level. The study used a split-plot factorial design with a basic design of a Completely Randomized Block Design. The first factor was the hydroponic system, consisting of S1 = Dutch …

Bioremediation Of Pb And Cd Contaminated Soil By Mycorrhiza And Biochar Treatment And Its Effect On Growth And Yield Of Shallot, Okti Herliana, Wilis Cahyani, Yugi Rahayu Ahadiyat

Jurnal Kultivasi

The contamination of shallots in the food chain by heavy metals such as lead (Pb) and cadmium (Cd) is caused by chemical fertilizers and pesticides. The study aimed to determine the growth and yields of shallot cultivated on soil contaminated with Pb and Cd using mycorrhiza and biochar. The study was conducted in the screen house at Jenderal Soedirman University, Faculty of Agriculture, from April to September 2020, and it was carried out using a factorial Randomized Completely Block Design that involved three replications and two factors. The first factor of mycorrhiza dosage comprised 0, 1, and 2 g/pot, and …

Bioremediation Of Pb And Cd Contaminated Soil By Mycorrhiza And Biochar Treatment And Its Effect On Growth And Yield Of Shallot, Okti Herliana, Wilis Cahyani, Yugi Rahayu Ahadiyat

Jurnal Kultivasi

The contamination of shallots in the food chain by heavy metals such as lead (Pb) and cadmium (Cd) is caused by chemical fertilizers and pesticides. The study aimed to determine the growth and yields of shallot cultivated on soil contaminated with Pb and Cd using mycorrhiza and biochar. The study was conducted in the screen house at Jenderal Soedirman University, Faculty of Agriculture, from April to September 2020, and it was carried out using a factorial Randomized Completely Block Design that involved three replications and two factors. The first factor of mycorrhiza dosage comprised 0, 1, and 2 g/pot, and …

Rhizobacterial Isolates From The Native Plant Ceanothus Velutinus Promote Growth In Two Genotypes Of Tall Fescue, Ananta Raj Devkota, Sukhmanjot Kaur, Amita Kaundal

Plants, Soils and Climate Student Research

Global warming-induced climate change haunts the world, posing a critical threat to plant health and crop production. Overusing chemical fertilizers and pesticides poses a significant threat to soil health. Ceanothus velutinus (snowbrush) is a drought-tolerant, actinorhizal native plant found in the Intermountain West region of the US that harbors many plant growth-promoting rhizobacteria (PGPR). In this study, we evaluated the effects of PGPR CK-06, CK-22, CK-44, and CK-50 from C. velutinus on the growth and development of two tall fescue genotypes: (i) a lawn-type tall fescue blend and (ii) an endophyte-free forage-type tall fescue known as Armory. Tall fescue plants …

Prediction Of Npk Doses Based On Targeted Fruit Sugar Content In Cucumis Melo L. ‘Cantaloupe’ Using A Simple Regression Method, Rangga Wibawa, Syariful Mubarok, Kusumiyati, Fiky Yulianto Wicaksono, Ruminta, Rahmat Budiarto, Dina Putri, Irvan Varinto, Muhammad Rizki, Adrian Maolana, Kahirun Nisa, Gunes Giyarto

Jurnal Kultivasi

The fruit sweetness is the main target in melon plant production. The highest criterion of sweetness is excellent, with 16% of total sugar content. Modification of essential plant nutrients is the alternative to reach that category. So, this study aims to obtain optimum NPK doses using a simple regression method. The experiment was conducted in a greenhouse with a soilless culture hydroponic system from August until November 2023 using a completely randomized design (CRD) with five treatments and four replications. The parameters included leaf area, plant dry matter, leaf nutrient uptake, fruit weight, and fruit sugar content. Pearson correlation analysis …

Potential Propagation Seedling Of Ramie (Boehmeria Nivea) From Various Types Of Stem Cuttings, Taufiq Hidayat Rahman Side, Mayasari Yamin, Sri Mulyani, Agung Pangestu Aji, Luthfi Ayunawati

Jurnal Kultivasi

Ramie is a fiber-producing plant that can replace cotton as a raw material for the textile industry. In general, ramie plants are reproduced using rhizomes, but it takes a long time, around two years, to be used as a source of planting material. Therefore, other sources of explants besides rhizomes are required, such as stem cuttings. Explants from stem cuttings are quickly available and only need 2-3 months to be used as planting material. This study aims to determine the potential of effective stem cuttings that can be used as planting material for the propagation of ramie seedlings. The research …

Agronomic Biofortification Of Calcium In Pak Choy (Brassica Rapa Subsp. Chinensis) Via Hydroponic Nutrient Film Technique, Regina Septiani Zahro, Khavid Faozi, Zulfa Ulinnuha, Agus Sarjito

Jurnal Kultivasi

Pak choy is rich in calcium, magnesium, phosphorus, iron, and vitamin K, all essential for health. Pak choy requires a proper balance of nutrients for optimal growth. In a hydroponic system, any imbalance in nutrient levels can negatively impact plant growth and reduce the nutritional value stored in the tissues. Selecting suitable varieties and providing appropriate calcium treatment can help increase calcium content and enhance productivity. This study aims to determine the effect of calcium concentration on growth, yield, and Ca content and the most responsive varieties to increased calcium concentration. The research design used was a Split Plot Design …

Correlation Of Arbuscular Mycorrhizal Dosage With Level Of Colonization, Nutrient Concentration, And Photosynthesis Pigment Of Cavendish Banana Plant, Muhammad Akhsan Akib, Nur Ilmi, Risnawati, Retno Prayudyaningsih, Syatrawati

Jurnal Kultivasi

The commercial development of Cavendish bananas still faces many obstacles, including the availability of seedlings/suckers at low prices, so technological substitution is needed to stimulate the growth of Cavendish banana suckers in the form of arbuscular mycorrhizal (AM) biological agents. The research aims to determine the correlation between AM doses and colonization levels, tissue nutrient concentrations, and photosynthetic pigments in Cavendish banana seedlings/suckers. It is also a novelty in this research study. The research was carried out in Parepare city at coordinates 3°59'30.204" S; 119°38'42.936" E using four AM doses as independent variables, namely 0 g, 5 g, 10 g, …

Comparative Study Of Rice Morphological And Physiological Characteristics Of Rice Grown Under Organic And Inorganic Farming, Amad Safrudin, Ratna Dewi, Dulbari

Jurnal Kultivasi

Organic farming practices have shown a potential to improve rice yields, aside from the popular conventional ones. This study aimed to comparatively analyze the morpho-physiological characteristics of rice plants grown under organic and inorganic farming. This research was conducted at the Polinela Organic Farm experimental station (5°21'10"S 105°13'43"E, 114 m sea above level), from February to April 2023 using a completely randomized design. The results showed that rice grown organically exhibited a notably higher chlorophyll index and actual water use efficiency compared to those grown inorganically. Conversely, inorganic farming resulted in a greater number of tillers than organic farming. However, …

Maize Hybrids’ Genetic Variability Based On Qualitative And Quantitative Traits, Slamet Bambang Priyanto, Herawati, Suwarti, Ayyub Ar Rahman, Nining Nurini Andayani, Abdul Fattah, Muhammad Azrai

Jurnal Kultivasi

Genetic variability was a prerequisite to doing a plant breeding program. A broad genetic variability allows plant breeders to select a desired genotype. This research aims to assess the maize hybrid's genetic variability based on qualitative and quantitative traits. This research was conducted in the Bone district, south Sulawesi, from November 2022 to March 2023. Fifteen maize hybrids were arranged in a randomized complete block design with three replications. The variables observed are qualitative and quantitative traits. Principal component (PCA) and cluster analyses assessed the genetic variability. The result indicated that based on a loading factor greater than 0.70, the …

Advancing Molecular Tools For The Study Of Rubus Viruses, Andrea Sierra-Mejia

Graduate Theses and Dissertations

Since blackberry yellow vein disease (BYVD) was first described, the blackberry virome has expanded significantly. BYVD is a complex disease associated with over ten viruses, yet the role of each virus in its etiology remains understudied. Studying the effect of each virus in disease development requires the identification of single infections; however, this task has been difficult for BYVD, with all field collected material over the past two decades consistently found infected by multiple viruses. Given the diversity of viruses associated with the disease and their different modes of transmission, obtaining pure virus cultures necessitate transmission of individual viruses via …

Root Plasticity Of Selected Corn (Zea Mays L.) Varieties Grown For Food And Forage In Response To Fertigroe®-N And Urea, Vanica Apostol, Edna Aguilar, Lilia Fernando, Lourdes Edano Ma., Tonette Laude, Eureka Teresa Ocampo

The Philippine Agricultural Scientist

Root plasticity, the capacity of a corn root system to modify its growth and development in response to varying environmental conditions, is a crucial adaptability trait for optimizing water and nutrient uptake, especially in a challenging environments. Understanding root plasticity provides insights into the pattern basis of crop adaptation, contributing to the development of improved corn varieties and agricultural practices that optimize the production of both ear shoots and forage. This study assessed root traits and other morphological-physiological responses of three corn varieties (NK8840, IPB Var 6, and Pearl Sweet) grown for food (ear shoots) and forage (baby corn fodder) …

Developing Holistic And Reduced Fertilization Guidelines For Southeastern Peach (Prunus Persica (L.) Batsch) Orchards, Richardson Bien-Aime

All Theses

Peach production in the southeastern United States requires optimizing fertilization practices to balance economic sustainability and environmental health. Current guidelines may overlook rootstock-specific nutrient requirements and fail to align with orchard-specific conditions, often resulting in overfertilization, increased costs, and environmental risks. This study, conducted at Clemson University’s Musser Fruit Research Center during 2023 and 2024, aimed to refine fertilization practices through two complementary experiments. The first experiment investigated how three rootstocks, ’MP-29’, Lovell, and Guardian, influence nutrient dynamics of ‘Carored’ peach trees. Nutrient concentrations were measured in various tree organs, including leaves, pruned wood, thinned fruitlets, and harvested fruits, along …

Long-Term Push–Pull Cropping System Shifts Soil And Maize-Root Microbiome Diversity Paving Way To Resilient Farming System, Abdul A. Jalloh, Fathiya Mbarak Khamis, Abdullahi Ahmed Yusuf, Sevgan Subramanian, Daniel Munyao Mutyambai

All Peer-Reviewed Publications

Background: The soil biota consists of a complex assembly of microbial communities and other organisms that vary significantly across farming systems, impacting soil health and plant productivity. Despite its importance, there has been limited exploration of how different cropping systems influence soil and plant root microbiomes. In this study, we investigated soil physicochemical properties, along with soil and maize-root microbiomes, in an agroecological cereal-legume companion cropping system known as push–pull technology (PPT). This system has been used in agriculture for over two decades for insect-pest management, soil health improvement, and weed control in sub-Saharan Africa. We compared the results with …

Evaluation Of Pierce’S Disease-Resistant Grapevine Cultivars In Upstate South Carolina, Annie Bruno

All Theses

Interest in wine grape production is increasing in South Carolina, but Pierce’s Disease (PD) caused by the xylem-limited bacteria Xylella fastidiosa (Xf) is a major limiting factor. Xf is spread by sap-sucking insect vectors in the Cicadellidae family such as sharpshooters. In the United States, Xf has become endemic to the southeast as global temperatures rise, causing winter temperatures to increase, which allows the bacteria to survive year-round. However, PD-resistant grapevine hybrid cultivars have become available through breeding V. vinifera genes with native American Vitis species that are resistant to Xf. In this study, the PD-resistant grapevine …

Soybean Cyst Nematode (Heterodera Glycines Ichinohe) Virulence Assay Against Resistance Sources In Nebraska, Pratibha Karki

Department of Plant Pathology: Dissertations, Theses, and Student Research

Soybean cyst nematode (SCN, Heterodera glycines Ichinohe), one of the major yield-limiting pathogens of soybean, is currently found in 60 counties of Nebraska that produce more than 90% of the state’s soybean. Often, yield loss occurs without any above-ground symptoms, which makes it difficult to manage. The primary management option is the use of SCN-resistant varieties. Several soybean plant introductions serve as resistance sources against SCN. Unfortunately, the single source, PI 88788, is used in approximately 90% of resistant varieties and its prolonged use has increased the virulence status of SCN in the U.S. A study was conducted to assess …

Field Assessment Of Fertilization, Nursery, And Crop Management Practices Among Tomato (Solanum Lycopersicum L.) Growers In The Ilocos Provinces, Philippines, Annalissa Aquino, Sancho Bon, Angelica Guanlao, Ann Mylalulex Magnaye, Filomena Sta Cruz, Pompe C. Sta. Cruz

The Philippine Agricultural Scientist

Growth and yield of many economically important vegetables like tomatoes are heavily influenced by crop management practices, particularly fertilizer application, irrigation scheme, and pest management. To attain maximum tomato yields and increase farmers’ profits, these crop production components must be optimized in local farm levels. Before optimization measures can be conducted, baseline information on prevailing practices needs to be evaluated. To assess the nutrient management and other crop production practices of tomato farmers in the Ilocos provinces, Philippines, on-farm surveys were conducted in 16 and 18 barangays planting fresh-type and processing-type tomatoes, respectively. The study involved a total of 88 …

The Effect Of Indaziflam On Seed Production In Perennial Cool-Season Grasses, Benson F. Israelsen

All Graduate Theses and Dissertations, Fall 2023 to Present

Annual invasive grass weeds are a major problem in grass seed production as they contaminate seed lots and decrease the quality. Few effective herbicides are available to control invasive grass weeds in seed production systems. Indaziflam is a pre-emergence herbicide capable of providing annual weed control for 3-5 years after application. Indaziflam is not labeled for use in seed production as little is known of the effect it will have. The purpose of this study was to measure total seed yield, seed germination, seed mass, and seedling vigor when applying 0, 40, 77, and 93 g ai ha^-1 of …

Field Prevalence Of Ring Nematodes In South Carolina And Its Potential To Predispose Peanut Pods To Aflatoxin Contamination, Sarala Giri

All Theses

Peanut ring nematode, Mesocriconema ornatum is a nematode pest of peanut which can cause necrotic lesions on pods, pegs, and roots. It has been reported to facilitate secondary infections in peanut and other crops resulting in more significant losses in yield and quality. Aspergillus flavus is a ubiquitous facultative saprophyte that produces aflatoxin, the most problematic mycotoxin for global health and economy. Experiments were conducted at the Edisto Research and Education Center of Clemson University to examine the relationship of ring nematode populations at pegging and harvest with aflatoxin concentration in peanut kernels due to infection by A. flavus …

Exploring The Physiological, Biochemical, And Enzymatic Responses Of Vigna Mungo Varieties To Mungbean Yellow Mosaic India Virus (Mymiv) Infection, Subham Dutta, Poly Saha, Mritunjoy Barman, R. Poorvasandhya, Moumita Panda, Tarique Ahmed, Thomas Wilbur Davis, Bulbul Ahmed, Mudagadde G. Deeksha, Jayanta Tarafdar

Department of Entomology: Faculty Publications

This study aims to enhance sustainable disease management in black gram by identifying varieties resistant to Mungbean Yellow Mosaic India Virus (MYMIV). We screened sixteen black gram genotypes, assessing physiological, biochemical and enzymatic basis. Results revealed a range of resistance levels, with PANT URD-19 showing the highest resistance (PDI 0.47%) and Pejua the lowest (PDI 37.24%). Seven genotypes demonstrated strong resistance, highlighting the necessity for targeted breeding. Variations in leaf thickness, trichome density, stomatal frequency, and epicuticular wax content were significant, with resistant varieties like LBG-888 and PANT URD-19 exhibiting thicker leaves, higher trichome density, and more wax, correlating with …

Phytoplankton Responses To Changing Irradiance And Carbon Fertilization, Alison Siersma

Graduate Theses and Dissertations (2019 - present)

Phytoplankton play a crucial role in marine ecosystems due to their innate ability to fix carbon. As atmospheric CO2 levels continue to rise from fossil fuel combustion, the resulting increase in dissolved CO2 and the concurrent decrease in ocean pH are likely to impact the phytoplankton community. The response of phytoplankton to elevated CO2 can vary significantly among species and environmental conditions (e.g. light, temperature, nutrient availability). To address these variations, an experiment was conducted using a controlled photobioreactor system, maintaining high and low light, constant temperature, nutrient levels, and two pCO2 concentrations. This study focused on two regionally relevant …