Digital Commons Network^™

Degradation And Metabolic Analysis Of Synthesized Quorum-Sensing Signals By The Model Eukaryote Chlamydomonas Reinhardtii, Adam Josef Bach

Theses and Dissertations

Bacterial organisms can “talk” with one another on a colony-wide scale using a communication system known as quorum-sensing (QS) via chemical signals. These signals are produced at a basal rate throughout the life of the bacteria and are classified as autoinducers, which diffuse across the cell membrane. Once the critical concentration is reached, they begin to diffuse back into the cell and initiate a phenotypic change. As these signals exist outside the membrane of their producer, they are also accessible to other organisms. It has already been noted that some plant species uptake these compounds through their roots and break …

Passive Microwave Remote Sensing Of Flash Drought Impacts On Vegetation, Quinton R. Deppert

School of Natural Resources: Dissertations, Theses, and Student Research

In 2002, Dr. Mark Svoboda characterized a new form of drought known as flash drought. Flash drought was defined as a rapid decline in vegetation health caused by severe heat and drought. In recent years, attempts to quantify the impacts of flash drought via precipitation, soil moisture, evapotranspiration, and temperature indicators have proliferated. What has rarely been quantified is what the rapid decline in vegetation health amid flash drought looks like through remote sensing. This is because vegetation health indices like the Normalized Difference Vegetation Index (NDVI) are derived from the visible and infrared regions of the electromagnetic spectrum and …

Sequential Products Of Anaerobic Denitrification In Calcareous And Noncalcareous Soils By Use Of The Gas Chromatograph, Grant S. Cooper

All Graduate Theses and Dissertations, Fall 2023 to Present

The sequential products of anaerobic denitrification were determined on seven Western soils (four alkaline, two acid, and one neutral) by soil and gas analysis. The soils with 1% alfalfa and added KNO3 were incubated at moistures slightly greater than field capacity and with an atmosphere of He. The soils and gases were periodically analyzed and balance sheets prepared. The sequence of NO3-->NO2-->N2O-->N2 operated in all soils. The rates of nitrogen interchanges and maximal amounts of nitrate, N2O2 and N2 were determined. From this data it was postulated that the rate-limiting process for denitrification in acid soils is …

Cannabis: A Model Plant To Study Light-Mediated Reproductive Development, Madigan J.H. Eckels

All Graduate Theses and Dissertations, Fall 2023 to Present

Cannabis (Cannabis sativa) is a plant of increasing importance for research, medical, recreational, industrial, and agricultural purposes, but a strict legal landscape means that it was chronically understudied. Now that research institutions can utilize this plant for study, we require updated terminology to describe various cannabis flowering types that occur under ideal and non-ideal growing conditions. We introduce new flowering terminology and describe them in text and with photographs.

Plants use light as a resource to power photosynthesis, and a greater total sum of photons generally increases yield. In controlled environment agriculture where growers utilize light fixtures instead …

High Throughput Phenomics Pipeline For Pulse Crop Nutritional Breeding, Amod Udayanga Madurapperumage

All Dissertations

Dry pea (Pisum sativum L.), lentil (Lens culinaris Medik.), and chickpea (Cicer arietinum L.) are major pulse crops valued for their high nutritional composition and importance to global food systems. Pulses are rich in carbohydrates, protein, and essential minerals, making them ideal whole foods and critical contributors to food and nutrition security. Due to these advantages, pulse breeding programs are increasingly focusing on enhancing nutritional traits, such as protein quality, amino acid balance, and micronutrient density, through the process of biofortification. However, improvement of agronomic traits remains equally essential. Characteristics such as plant height, standability, stress tolerance, …

Dendroclimatic Response Of The Wet Miombo Woodland Species: A Case Study Of Mufulira District, Copperbelt Province, Zambia, Collins Chibuye Malubeni

All-Inclusive List of Electronic Theses and Dissertations

Zambia is a tropical, landlocked country that lies in the South-Central part of Africa. The climate in Zambia includes distinct dry and rainy seasons, mainly influenced by the north-south movement of the Intertropical Convergence Zone (ITCZ), which shifts seasonally. This research is focused on understanding the relationship between tree growth and climate using dendrochronology. Forty-nine tropical species, including Julbernardia paniculata, Brachystegia longifolia, and Pericopsis angolensis, were analysed for dendroclimatic potential, and 70% showed clear ring formation, indicating that trees in this locality produce distinct annual ring boundaries. For the single species chronology, thirteen cores from eight trees that were initially …

Morphology And Bioactive Compounds Of Gurmar (Gymnema Sylvestre) With Potential As Antidiabetics, Neny Novita Yuliany, Abdillah Maulana Farhan, Putry Lazimatu Ziyaroh, Edia Fitri Dwinianti, Husnatun Nihayah, Mukhamad Su'udi

Jurnal Kultivasi

The medicinal plant Gymnema sylvestre is widely known for its ability to lower blood sugar levels. This study reviewed the physical characteristics and bioactive compounds of G. sylvestre sourced from different regions, emphasizing its potential as an antidiabetic agent. Morphological analysis includes leaf structure, trichome presence, and other anatomical features, which can influence the plant's chemical profile. Phytochemical analysis, performed using techniques like GC-MS, identifies key bioactive compounds such as saponins, flavonoids, and gymnemic acids, which contribute to its hypoglycemic effect. The findings indicate that regional variations can affect the concentration and presence of these compounds, suggesting that environmental factors …

Optimization Of Physalis Angulata L. Callus Induction And Salinity-Induced Antioxidant Production, Firstian Naufal Sistyananda, Erni Suminar, Anne Nuraini, Muhamad Kadapi, Murgayanti, Syariful Mubarok, Rahmat Budiarto, Eddy Renaldi, Kusumiyati

Jurnal Kultivasi

Groundcherry (Physalis angulata L.) is a plant with many medicinal potentials due to its rich secondary metabolites such as phenolic and flavonoid. However, conventional agriculture practices are still limited, especially in Indonesia. This study was divided into two stages. The first stage was conducted to determine optimal 6-BAP and 2,4-D combination for callus induction, while the second stage was conducted to determine callus phenolic, flavonoid, and antioxidant response to salinity stress. The first stage was arranged in factorial completely randomized design with two factors: 6-BAP (0, 2, and 4 mg/L) and 2,4-D (0, 0.5, 1, and 1.5 mg/L). The second …

Estimating Leaf Area In Velvetleaf (Limnocharis Flava) And Kangkong (Ipomea Aquatica): A Precise And Non-Destructive Approach For Wetland Vegetables, Anggrika Riyanti, Benyamin Lakitan, Momon Sodik Imanudin, Muhammad Yazid

Jurnal Kultivasi

Developing a leaf-area estimation model for vegetable cultivars in wetlands is essential to optimizing agricultural cultivation practices. This study aims to develop a non-destructive model for leaf area estimation in wetland vegetable cultivars (velvetleaf (Limnocharis flava) and kangkong (Ipomoea aquatica)) using regression-based models. The plants were cultivated in a wetland system. Measurements of leaf length and width were taken on all leaves of each plant, using the product of length and width (L×W) as predictor. The regression models for estimating leaf area were adjusted from linear, zero-intercept linear, quadratic, and power. The optimal model was evaluated using the determination coefficient …

Response Of Chlorophyll, Morphology, And Yield Of Several East Java Superior Soybean (Glycine Max L.) Varieties To Levels Of Salinity, Puji Lestari Tarigan, Ida Retno Moeljani, Fadila Suryandika, Hadi Munarko

Jurnal Kultivasi

Soybean production has been extended to saline areas. This development is a strategy to expand planting areas to suboptimal land to increase worldwide production. To support cultivation in these locations, it is necessary to develop superior varieties that are resistant to salinity and provide supporting technological inputs. In saline conditions, soybeans may face stress that leads to morphological, physiological, and yield disturbances. Consequently, the response of several soybeans in East Java should be observed. This study is a pot experiment and arranged in a Factorial Completely Randomized Design (CRD) consisting of two factors, soybean varieties and NaCl concentrations. The treatments …

Growth Of Vanilla Cuttings Under Modified Acid Soil Media And Application Of Several Plant Growth Regulators, Rifqi Raditya Kurniawan, Yugi Rahayu Ahadiyat, Etik Wukir Tini

Jurnal Kultivasi

This research aimed to optimize the growth of vanilla (Vanilla planifolia) cuttings in acid soils by modifying the growing media and applying several types of plant growth regulators (PGRs). Several types of PGRs, including synthetic compounds such as indole-3-acetic acid (IAA) and 6-benzylaminopurine (BAP), as well as natural extracts from shallot (Allium ascalonicum L.) and moringa leaves (Moringa oleifera), were tested to enhance plant performance in acid-growing conditions. The primary objectives were to determine the optimal soil amendment formula and the most effective PGR type for promoting vanilla growth, and to develop a measurable, easy-to-use PGR formulation accessible to farmers. …

Effects Of Phosphate-Solubilizing Fungi On Phosphorus Availability, Retention, And Soil Chemical Properties In Shallot Cultivated On Andisols Of North Sumatra, Agustina Erlinda Marpaung, Tengku Sabrina, Abdul Rauf, Dwi Ningsih Susilowati

Jurnal Kultivasi

The availability of phosphorus (P) is one of the main limiting factors for plant productivity in Andisol soils due to the strong fixation of P by allophane clay minerals, aluminum and iron oxides. Giving the phosphate solubilizing fungi (PSF) is an alternative to increase available P which plants can use to increase the yield. This study aimed to evaluate the effectiveness of phosphate-solubilizing fungi (PSF) in improving P availability on Andisol. The experiment used a block randomized design (BRD) with three replications. The first factor is Andisol soil origin (Soil 1 and Soil 2) and the second is isolate of …

Effects Of Gibberellic Acid (Ga3) On Growth In Setaria Viridis Mutant Families, Rebecca Laird, Charmaine Dao, Kayneisha Hepburn, Madison Brown, Hailey Veninga

2026 Student Academic Showcase

The grass Setaria viridis has frequently been employed in research due to its short life cycle, small genome, and close relationship to food crops like maize (corn). Setaria is utilized to study the genetic processes governing reproductive development. In this experiment, the effects of gibberellic acid (GA) therapy on several Setaria viridis mutant families have been investigated. This experiment also aims to detect variations in plant height phenotype by comparing GA-treated plants with untreated control plants. The researchers collected and planted eight dwarf millet seeds and one wild type mutant seed and planted in a ‘control’ tray and a ‘treatment’ …

Impact Of Pvc Microplastics On The Growth Of Raphanus Sativus, Olivia Fawkes, Alissia D. Fulton, Darlene Panvini

SPARK Symposium Presentations

Microplastics have emerged as a growing concern due to their increasing prevalence in terrestrial ecosystems. Understanding how microplastics affect plant growth is crucial for the agricultural industry, as crop productivity and soil quality have a direct impact on food security and farm sustainability. This study examined the impact of polyvinyl chloride (PVC) microplastics on the germination and growth rate of Raphanus sativus. Seeds were grown for six weeks in a controlled growth chamber in petri plates and soil pots containing varying concentrations of PVC microplastics (0, 25, 50, 75, 100 mg/L), including untreated PVC and PVC artificially weathered through …

Transgenic Plant Cells For The Cost-Effective Production Of Pharmaceutical Proteins, Maria Gambaro

Create@State

Plant-based systems are becoming an important method for producing pharmaceutical proteins because they can be more cost-effective, and safer compared to traditional production methods which commonly use mammalian cells. This project aims to develop a transgenic plant cell system that can produce a pharmaceutical protein using molecular cloning techniques. A transgenic plant cell has the DNA of another plant integrated into its genome, altering its gene expression to produce different proteins. To begin, a plasmid carrying the gene of interest and the DNA components needed for expression will be designed. The plasmid will then be used to introduce the gene …

Potential Applications Of Thymus Vulgaris In Dental Care: A Review Of Antimicrobial And Oral Health Benefits, Lakenzia Z. Ham

Undergraduate Research Conference

This research proposal focuses on how common thyme (Thymus vulgaris) can be used in dental care. There has been more interest in natural products for dental health because some common dental treatments can have side effects or lead to antibiotic resistance. Thyme contains natural compounds like thymol and carvacrol that help kill bacteria, reduce inflammation, and prevent buildup on teeth.

The purpose of this study is to investigate the current scientific literature to see the effectiveness of thyme in preventing common oral health problems like cavities, gum disease, and bad breath. Research shows that thyme can fight bacteria …

From Garden To Laboratory: The Scientific Significance Of Zinnia Elegans, Katelyn G. Klark

Undergraduate Research Conference

Zinnia elegans is a flowering species in the Asteraceae family that originated in Mexico and eventually spread to Europe (Burlec et al., 2019). This species' vast array of colors, drought resistance, and other agricultural benefits make this plant highly sought after in gardens worldwide (Burlec et al., 2019). However, following the methodology of a preliminary research literature review, recent scientific research suggests that Z. elegans may possess significance beyond its aesthetic appeal. This literature review aimed to examine recent scientific findings regarding zinnias and their potential agricultural, medicinal, and genetic applications. To explore these possibilities, recent scientific studies were examined …

Molecular Adaptation Of Sweet Potato To Martian Soil Simulant: Insights From Mrna And Long Non-Coding Rna Analyses, Subramanyam Reddy Chinreddy, Karthik Chinnannan, Purushothaman Natarajan, Vaibhavi Patel, Gwonjin Lee, Manohar Chakrabarti, Padma Nimmakayala, Umesh K. Reddy

School of Integrative Biological & Chemical Sciences Faculty Publications

Introduction: Understanding how crops adapt to extraterrestrial environments is essential for sustainable space agriculture. Sweet potato (Ipomoea batatas), a nutritionally rich and stress-resilient crop, is a promising candidate for cultivation under Martian-like conditions, characterized by high salinity, heavy metal contamination, and poor water retention.

Objective: This study aimed to elucidate the molecular mechanisms underlying sweet potato adaptation to Martian soil analog conditions using Mars Global Simulant-1 (MGS-1).

Methods: Leaf, shoot, and storage root tissues of sweet potato grown in MGS-1 were subjected to RNA sequencing. Differentially expressed mRNAs and long non-coding RNAs (lncRNAs) were identified, and functional enrichment analyses were …

High Germinability Can Facilitate Recovery Of Adelia Vaseyi (Euphorbiaceae), An Imperiled Tamaulipan Thornscrub Shrub, Saroj Dhakal, Bashira Chowdhury, Alejandro Fierro-Cabo

School of Earth, Environmental, & Marine Sciences Faculty Publications

While critical to maintaining dryland biodiversity and drought resilience, reforestation has been limited in subtropical dry forests because of knowledge gaps in seed biology that must be filled to upscale seedling production and ensure recovery of imperiled endemic plants. We characterized seed germination, dormancy, and storage needs for Adelia vaseyi, a threatened endemic shrub commonly included in planting mixes to restore Tamaulipan thornscrub, an imperiled subtropical forest spanning South Texas and Northeastern Mexico. We found A. vaseyi seeds have high germinability (82.0%) and a short mean germination time (3.04 ± 0.08 days). A delia vaseyi seed does not appear …

Testing The Intermediate Disturbance Hypothesis On Anthropogenic Pressure In Central Alabama, Gavin Terrell

Theses

Biodiversity is fundamental to maintaining ecosystem structure and function globally. Prior to the late 20th century, ecological theory generally predicted that biodiversity would be highest in systems experiencing minimal disturbance. However, Joseph H. Connell challenged this view with the Intermediate Disturbance Hypothesis (IDH), which posits that species diversity peaks at intermediate levels of disturbance and declines under conditions of both low and high disturbance. Although widely cited, the applicability of the IDH to natural systems remains debated, particularly in the context of anthropogenic disturbances and when diversity is measured beyond species richness alone.

This study evaluated the predictions of the …

Assessment Of Precision Rangeland Management Tools In The Nebraska Sandhills, Hannah K. Allen

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

The objective of this thesis is to evaluate tools and management strategies that contribute to rangeland monitoring and livestock distribution in heterogeneous grassland systems of the Nebraska Sandhills. Chapter one reviews relevant literature related to precision livestock management, the Nebraska Sandhills, biomass estimation, and pyric herbivory. The second chapter evaluates the use of fractional green canopy cover (FGCC) derived from the Canopeo mobile application as a rapid method for estimating aboveground biomass in Sandhills rangelands. Biomass samples were collected across topographic positions in both early and late growing season, and relationships between FGCC and clipped biomass were assessed using generalized …

International Rice Outlook: International Rice Baseline Projections 2025-2035, A. Durand-Morat, W. Mulimbi

AAES Research Reports and Research Bulletins

• Over the next ten years, global rice consumption is projected to exceed global rice production, making existing stocks crucial for meeting the global rice market demand. • Global production is projected to grow mostly due to productivity gains and some area expansion, with India’s production performance becoming more relevant. • The global rice consumption is projected to climb, driven mainly by population growth. The average global per capita rice consumption is expected to drop slightly over the next decade, primarily due to slower per capita consumption growth in Asia and Africa. • The international prices of long-grain and medium-grain …

Liparis Condylobulbon Reichb. F. From Gumitir, Indonesia: Morphology, Molecular, And Phytochemical Profile, Fuad Bahrul Ulum, Asyifa Yasmin Arum, Kurnia Sa’Adah, Dwi Setyati, Edia Fitria Dwinianti, Ranjithkumar Rajamani, Ari Satia Nugraha, Mukhamad Su’Udi

Makara Journal of Science

Liparis condylobulbon Rchb.f. is an epiphytic orchid across South and Southeast Asia, which holds notable ethnomedicinal and pharmacological significance. This study aims to characterize Indonesian Liparis condylobulbon using integrated morphological, molecular (matK, rbcL, ITS2), and phytochemical (LC-MS, DPPH) analyses of specimens from Mount Gumitir, providing the first comprehensive taxonomic and pharmacological profile to support species authentication and future bioprospecting. The L. condylobulbon specimen displays diagnostic epiphytic morpho-logy, including fusiform pseudobulbs, two elongate leaves, and an erect inflorescence bearing ~123 flowers. Molecular barcoding using matK, rbcL, and ITS2 confirmed its identity, with phylogenetic analyses consistently clustering it with …

Predicting Tart Cherry Stem Water Potential Using Uav Multispectral Imagery And Environmental Data Via Symbolic Regression, Anderson L. S. Safre, Alfonso Torres-Rua, Kurt Wedegaertner, Brent Black, Brennan Bean, Burdette Barker, Matt Yost

Civil and Environmental Engineering Faculty Publications

Tart cherry is an important fruit crop in Utah, where irrigation is essential due to arid conditions. Precision irrigation requires reliable indicators of plant water status, and stem water potential (Ψ_stem), is among the most sensitive though labor-intensive and spatially limited. This study develops Ψ_stem estimation models using high-resolution multispectral Unmanned Aerial Vehicle (UAV) imagery combined with meteorological and soil moisture data, applying Symbolic Regression (SR). Results show a stronger correlation between optical bands and Ψ_stem during the pre-harvest period. Among 85 vegetation indices, the Red Chromatic Coordinate (RCC) index performed best (R² = 0.67). …

Wayne E. Sabbe Arkansas Soil Fertility Studies 2025, Nathan A. Slaton

Arkansas Agricultural Experiment Station Research Series

Rapid technological changes in crop management and production require that the research efforts be presented in an expeditious manner. The contributions of soil fertility and fertilizers are major production factors in all Arkansas crops. The studies described within will allow producers to compare their practices with the university’s research efforts. Additionally, soil-test data and fertilizer sales are presented to allow comparisons among years, crops, and other areas within Arkansas.

At Utah Lake, Large Changes In Water Level Impact The Restoration Of Native Plant Species, Mac Havens

Research on Capitol Hill

Native plant communities at Utah Lake matter for top-class recreation opportunities, migratory bird populations, June Sucker recovery efforts, and local economies.

Systematic Synthesis Of Crispr/Cas Applications For Enhancing Salt Tolerance In Crops: A Decade Of Progress And Challenges, Xindi Sun, Fusheng Wu, Zhuanzhuan Ma, Guohao Liang, Shumei Chen, Xutong Hu, Shugao Fan, Ying Zhao

School of Mathematical & Statistical Sciences Faculty Publications

Soil salinity is a major constraint on global crop productivity, driving the need for salt-tolerant varieties. While CRISPR-Cas genome editing offers targeted solutions for trait improvement, significant biological and technical bottlenecks limit its application in conferring salt stress resilience. This systematic summarizes findings from 83 peer-reviewed studies (2015–2024) employing CRISPR/Cas technologies to improve salt tolerance in five major crops (rice, wheat, maize, sorghum, barley). Our systematic review reveals that early single-gene edits achieved modest gains (30–50% Na⁺ exclusion) but often showed limited yield gains in field settings, potentially due to compensatory regulation and environmental variation. The literature suggests that multiplex …

To Hold Or Sell Breeding Cattle In The Rangelands, Department Of Primary Industries And Regional Development, Western Australia

Animal production and livestock factsheets

In a dry season where feed, water and finances are limited, removing less productive animals as soon as possible is a good option. This will free up feed for more productive animals and help preserve ground cover.

This page provides some of the information and a process for making decisions about holding or selling breeding cattle.

Deep Amelioration Of Compaction And Acidity Doubled The Water Use Efficiency Of Cereal Crops On A Sandy Soil In A Long-Term Experiment In A Water-Limited Environment, Gaus Azam, Md. Shahinur Rahman, Craig Scanlan, Md. Hasinur Rahman, Ross Gazey, E G. Barrett-Lennard, Kanch Wickramarachchi, Bob Nixon, Chris Gazey

Natural Resources Research Articles

The co-occurrence of subsoil compaction and acidity commonly decreases the yield and water use efficiency (WUE) of agricultural crops around the world, yet the benefits of the complete amelioration of these constraints on yield and WUE remain unclear. We conducted a long-term field experiment in Western Australia (WA) to evaluate the effects of the complete removal of subsoil compaction and acidity through soil profile re-engineering — involving soil removal, replacement, and lime incorporation — on root architecture, yield, and WUE in wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.). Treatments included an untreated control, and soil loosening to 0.45 …

Predicting Male Flowering Time In Maize Using Machine Learning Technique, Dipok Deb

Data Science and Data Mining

This study compares three machine learning approaches—Elastic Net, Principal Component Regression (PCR), and Partial Least Squares (PLS)—for variable selection and prediction within a high-dimensional Maize-GWAS framework. The goal was to accurately predict the complex polygenic trait of time to male flowering while managing the challenges of numerous, highly correlated genetic markers. The ENET model, which combines l1 and l2 penalties, delivered the highest predictive accuracy and successfully identified a select subset of the most influential genetic variants. In contrast, PCR and PLS, both utilizing dimension reduction, offered a significant advantage in computational speed and model stability. The findings confirm that …