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Physics Model Calibration Via Functional Kernel Regression, Kwesi Appau Ohene-Obeng

Open Access Theses & Dissertations

Physics based computational simulators encode the governing equations of complex physical phenomena through parameters that must be inferred from empirical observations, and the observational record in modern experimental campaigns is increasingly a high dimensional functional response rather than a scalar summary. The canonical treatment of this calibration problem through the additive discrepancy decomposition of Kennedy and O'Hagan incurs O(N^3obs) Gaussian process inversion costs at functional resolution, sensitivity to discrepancy prior specification, and the confounding identifiability between the calibration parameter and the discrepancy function; scalar reduction strategies bypass the cost but discard the morphological information that the functional response carries about …

A Study On The Complex Doping Of Na2x2teo6 (X = Ni, Cu, Fe, Co, Zn), Omar Salas

Open Access Theses & Dissertations

Na2Ni2TeO6 is a layered honeycomb antiferromagnet in which Ni2+ ions form magnetic honeycomb planesseparated by sodium layers. In this work, four compositionally complex oxides derived from Na2Ni2TeO6 were synthesized to test whether the NNTO-type structure remains stable when 50% of the Ni sublattice is replaced by mixtures of Cu, Zn, Fe, and Co. Powder X-ray diffraction and neutron powder diffraction show that all four samples retain the hexagonal P 63/mcm average structure of the parent NNTO phase, demonstrating that the layered honeycomb framework is stable against substantial multiple-cation substitution. A small CoFe2O4 secondary phase is present in all four samples …

Dlc Thin Films For Semiconductor Applications, Balam Arturo Sotelo

Open Access Theses & Dissertations

The growing need for resilient semiconductor supply chains has increased the interest in developing local and accessible materials fabrication strategies. Since large-scale semiconductor manufacturing is complex to establish quickly, simpler deposition techniques may provide a practical route to start developing semiconductors materials. Diamond-like carbon (DLC) is a promising candidate in this context because its properties can be tailored through substrate selection and processing parameters.

This thesis establishes an initial framework for the study and fabrication of diamond-like carbon (DLC) materials in the Department of Physics at The University of Texas at El Paso. DLC thin films were deposited by magnetron …

Emergent De Sitter Expansion And Closed Topology From The Cosmic Fabric Model As An Open Thermodynamic System: Resolving The Negative Bulk Modulus Paradox, T G. Tenev, C B. Ward, T F. Tenev, M F. Horstemeyer

Faculty Publications and Presentations

The Cosmic Fabric Model establishes a continuum-mechanics isomorphism to General Relativity by representing physical space as an elastic three-dimensional hyperplate embedded in a four-dimensional spatial bulk. Reproducing vacuum kinematics requires a vanishing P-wave modulus, which in turn implies a negative bulk modulus—an apparent thermodynamic instability in a closed system. This paradox is resolved by recasting the framework as an open system: the instability is not pathological but instead drives cosmic expansion. In this interpretation, the observable universe is a lower-energy solid formed through continuous solidification from a higher-dimensional precursor fluid. Using multiplicative kinematics from finite-growth mechanics, the model shows that …

Simulations Of Atmospheric Pressure Streamer Discharges: Mechanisms Of Streamer Propagation And Related Physics, Dejan Nikic

Electrical and Computer Engineering ETDs

Gas discharge simulations are performed with particular focus on photoionization process in a positive streamer discharge. The effects of this process are investigated by isolating the change in photoionization mean free path (MFP) and keeping the additional processes constant. Furthermore, comparison are made between various effects of simulation parameters, such as initial conditions, geometry extent, simula- tion particle count etc. All of these simulations are performed using a modern Direct Simulation Monte Carlo Particle-in-Cell (DSMC-PIC) code developed by Sandia Na- tional Laboratories. Large scale simulations including 1 cm and 5 cm electrode gaps are performed under standard atmospheric condition air. …

New Distance Distributions Of Asymptotic Giant Branch Stars And Their Role In Tracing Galactic Structure, Rajorshi Bhattacharya

Physics & Astronomy ETDs

Asymptotic giant branch (AGB) stars are among the final evolutionary stages of low- and intermediate-mass stars and among the most luminous cool stellar populations in the Milky Way (MW). Their strong infrared emission allows them to be observed through regions of high interstellar extinction, making them useful tracers of the inner MW. However, their use is limited by unreliable distances because many are dust-obscured and variable, while geometric parallaxes are often unavailable or uncertain. This thesis develops statistical distance-estimation methods for large samples of oxygen-rich AGB stars. The resulting distances broadly agree with literature estimates, supporting their statistical reliability for …

Extending The Discovery Space Of Tess: Probing Underexplored Exoplanet Populations, Mallory L. Harris

Physics & Astronomy ETDs

This dissertation investigates how cold exoplanets can be identified despite the strong observational bias of exoplanet surveys toward short-period systems. Planets at wider orbital separations remain comparatively poorly constrained, limiting tests of planetary-system formation and the prevalence of outer architectures beyond compact systems. To address this gap, I use two complementary approaches. First, I develop a transit-search pipeline for TESS Full-Frame Images that identifies both isolated and repeated transit-like signals around nearby M dwarfs and characterizes the dominant false-positive classes that limit sensitivity in this regime. I then present TOI-904 c, the coldest planet discovered by TESS around an M …

An Investigation Of Tess M&Ms And The Occurrence Rate Of Transiting Circumbinary Planets, Dominic Oddo

Physics & Astronomy ETDs

Circumbinary planets (CBPs) are worlds which orbit two stars simultaneously. CBPs are excellent tests of the tenacity of planet formation, but are difficult to detect. The space-based NASA Transiting Exoplanet Survey Satellite (TESS) mission is a nearly all-sky survey designed to detect exoplanets transiting nearby stars. In this dissertation, I analyze the performance of TESS by comparing to the photometric precision of the ESA CHEOPS mission. Then, I define a catalog of low-mass eclipsing binaries (M&Ms), which are the best sources to search for CBPs. I describe my custom transit search methodology and apply it to the M&M catalog. I …

Simulating Quantum Field Theories On Fault-Tolerant Quantum Computers, Mason L. Rhodes

Physics & Astronomy ETDs

Quantum field theories are an essential framework in modeling fundamental interactions in nature, yet reliable simulations consume large portions of the world's most powerful supercomputers. In this Dissertation, we explore an alternative simulation paradigm on fault-tolerant quantum hardware, discussing both algorithmic and model advancements. In the former, we construct state-of-the-art algorithmic subroutines that take advantage of useful properties of the Hamiltonian describing the theory to achieve an exponential improvement in resources over prior quantum algorithms. In the latter, we simplify the structure of the Hamiltonian, making it more amenable to quantum simulation. First, we present an improved regularization of the …

Strategies For Large Dynamic Range, Entanglement-Enhanced Quantum Metrology With Experimentally Demonstrated Resources, Tyler G. Thurtell

Physics & Astronomy ETDs

Quantum metrology studies the use of quantum mechanical systems as measurement devices or sensors. Surprisingly, preparing a sensor in an entangled state can enhance measurement precision. The simplest protocols for entanglement enhancement sense only small changes in a quantity. The range of values over which a measurement protocol works is called its dynamic range. For many types of sensors we require end-to-end protocols that describe how to use entanglement to achieve enhanced precision over a large dynamic range. In this dissertation, we describe two approaches to achieving entanglement-enhanced sensing over a large dynamic range. The first approach uses entangling resources …

Quantum Control Of Qubits And Qudits In Neutral Atom Systems, Sri Datta Vikas Buchemmavari

Physics & Astronomy ETDs

This dissertation explores control of neutral atom quantum systems across multiple levels of abstraction, from atomic physics to system-level fault tolerance, using optimal control to improve performance. First, we propose a Rydberg entangling gate based on dressing with only the qubit control field; an interaction energy near the Rabi frequency benefits both gate speed and Rydberg decay. Second, with Sandia National Laboratories, we show that leakage errors in neutral atom systems can be converted to atom loss errors and detected using two entangling gates with an auxiliary atom, where a SWAP-based leakage detection unit outperforms the standard design. Next, we …

Algorithmic Sculpting Of Complex Fused Silica Surfaces For Nondestructive, Mode-Matched Cavity Quantum Electrodynamics: Adaptive Co2 Milling And Simulation-Guided Ultrafast Inscription, From Fiber Fabry-Perot Cavities To Monolithic Architectures, Meagan E. Parker

Optical Science and Engineering ETDs

Quantum sensors achieve exceptional measurement sensitivity through coherent, well-isolated quantum systems, but practical deployment is hindered by destructive readouts that require repeated state preparation and create long system dead times. Optical cavities enable continuous, nondestructive measurements with minimal back-action, yet integrating high-finesse cavities into scalable quantum devices remains limited by existing fabrication methods. To overcome these constraints, an adaptive CO₂ laser-milling platform was developed. Guided by glass thermodynamics and melt dynamics, this closed-loop system uses in-situ phase-shifting interferometry to sculpt complex fused-silica surfaces with sub-nanometer root-mean-square roughness. The platform was validated by fabricating extended-length fiber Fabry–Pérot cavities and monolithic micro-cavity …

Non-Traditional Rare-Earth-Doped Oxide Glass As A Gain Medium, Jared S. Tolliver

Optical Science and Engineering ETDs

There is a need for mid-infrared(MIR) lasers in defense, medical, and environmental monitoring. A large part of this technological development is the study of gain media. One class of materials of special interest is glasses with a low maximum phonon energy. These have the fiberization and broad spectral features of glass, whereas glasses with high maximum phonon energy exhibit higher rates of multi-phonon relaxation and can be opaque in the MIR, both of which are detrimental to laser operation. Recent advances in container-less processing have allowed for the study of new glasses that aren’t possible with conventional fabrication techniques. One …

Measurements And Studies For Rare Event Searches Using Directional Detectors, Elizabeth Tilly

Physics & Astronomy ETDs

Measuring topology and initial direction of low-energy (keV-MeV) particle tracks is interesting to rare-event searches. While directional dark matter searches have been one of the largest drivers for R&D for low-energy directional detectors, this work is interested in its application to Migdal searches. The Migdal effect—a nuclear recoil and an electron recoil sharing a vertex—has been used as a detection channel for low-mass dark matter but has only recently been measured. Low-energy directional detectors are ideal to measure the canonic Migdal topology. This dissertation discusses 3D reconstruction algorithms developed for the Migdal In Galactic Dark mAtter expLoration (MIGDAL) experiment and …

Exploring The Role Of A Mushy, Crustal Compliant Region In Volcano Deformation, Grant A. Block

Physics & Astronomy ETDs

Volcanoes are both creative and destructive forces that have shaped and continue to shape our world from early geologic time to the present day. Continued study of volcanic processes not only better prepares us for monitoring volcanic hazards but also allows us to better understand processes fundamental to Earth as we know it, such as the generation of the atmosphere and accretion of the continents. This dissertation focuses on an integral part of volcanic processes: the trans-crustal magmatic transport system. Specifically, we investigate regions of these transport systems where magma pools in melt-rich lenses within broader regions of low melt-fraction, …

Multiscale Network Modeling Of Native And Modified Photosynthetic Light-Harvesting Complexes, Zane E. Armijo

Chemical and Biological Engineering ETDs

Photosynthetic light-harvesting complexes harvest solar energy and direct electronic excitations toward reaction centers with exceptional efficiency. This dissertation models the Fenna--Matthews--Olson complex of green sulfur bacteria, coupled to the PscA1 reaction center, as a chromophoric network. Forster resonance energy transfer theory, validated against numerically exact hierarchical equations of motion, was implemented in kinetic Monte Carlo simulations to resolve fine-grained excitation-transport pathways. The predicted charge-transfer efficiency of 77\% agrees with experiment, with the FMO2 monomer and its gateway pigment governing interfacial transfer. Systematic single, multi, and symmetry-preserving site removals, interpreted through Mobius inversion, identify critical pigments and show that cooperative effects …

Superresolution Spectroscopy Of Atomically Thin Semiconductors And Moiré Heterostructures, Chien-Chu (Charity) Wei

Master's Theses

Atomically thin semiconductors and moir’e heterostructures provide an important platform for studying quantum phenomena shaped by reduced dimensionality, interlayer coupling, strain, and local structure. In MoS2, the transition from bulk to monolayer form changes the material from an indirect to a direct band gap, while stacked and strain-engineered systems can produce spatially varying moir’e potentials on nanometer length scales. Because these effects are highly localized, conventional far-field optical spectroscopy is often limited in its ability to resolve them directly. This thesis explores superresolution vibrational spectroscopy as a route toward probing local behavior in atomically thin semiconductors and moir’e heterostructures. Far-field …

Diagrammatic Methods For Calculating Correlation Functions In Low-Dimensional Quantum Gravity, Nicholas A. Parrilla

Master's Theses

This thesis investigates connections between random matrix theory and low-dimensional quantum gravity through the spectral form factor (SFF), a well-studied function that characterizes correlations in the eigenvalue spectrum of an operator. In random matrix ensembles, a feature of the SFF known as the “ramp” is governed by universal spectral correlations, and in Jackiw–Teitelboim (JT) gravity this regime is due to the double-trumpet wormhole geometry. We study the connected correlation functions underlying the SFF using combinatorial, diagrammatic methods from a mathematical formalism known as second-order free probability theory, where they are expressed in terms of annular noncrossing permutations. To access a …

Developing And Testing Visualization Simulations For The Gamma-Ray Energy Tracking Array (Greta), Blake Mcnulty

Physics and Astronomy Summer Fellows

GRETA is a recently-completed Department of Energy-funded project to construct an array of 120 gamma-ray detectors for use in nuclear physics experiments. The Gretina Array was the successful pilot project to construct 48 of the eventual 120 detectors that would be used in the array. UCGretina is a program that is used to simulate the GRETA array for the purposes of planning experiments and analyzing measurements. My job for this summer, with the advent of the full GRETA system, was to implement the new modular mounting structure for the full GRETA array in the simulation code. This involves creating the …

Culmination Of The Arts And Stem To Enhance Creativity And Promote Learning, Kaleigh Evans

Physics and Astronomy Summer Fellows

In this work, we investigate the results from a survey, issued to a course in “Stained Glass” (n= 23 students). Major findings include that the introduction of a problem-based learning (PBL) course in the arts of stained glass may support high demand skills such as interdisciplinary conceptual learning as well as soft skills such as scientific confidence, interdisciplinary transfer, and collaborative learnings. A journal paper draft was completed and will be submitted this Fall. This summer, work was also done to establish a guide to modeling and 3D printing to help establish and grow a makerspace on campus for use …

Simulations Of Skyrmions And Merons, Ryan Friesen, Aidan Kirk, Tom Carroll, Xuemei Cheng

Physics and Astronomy Summer Fellows

Skyrmions and merons are particle-like spin structures that are found in specific magnetic materials. Due to their stability and nanoscale size, these quasiparticles have been proposed as promising candidates for qubits in quantum computing applications. Our goal is to design materials that can host and stabilize these quasiparticles. Skyrmions and merons exist only under specific conditions, and the parameter space for these materials is vast. Thus, we use the simulation package MuMax3 to run simulations to test the viability of potential materials to simplify this search. We present on our simulations of these skyrmions and merons. This work was supported …

Glassy Magnetic Freezing Of Interacting Clusters In Materials Related To The Lk-99 Family, Serafim Teknowijoyo, Domenico Napoletani, Vahan Nikoghosyan, Armen Gulian

Mathematics, Physics, and Computer Science Faculty Articles and Research

We report reproducible magnetization anomalies appearing below room temperature in copper-doped apatite materials belonging to the LK-99 family synthesized via hydrothermal methods. These anomalies are observed consistently across samples prepared under comparable conditions. Although the extracted Mydosh parameter lies within the range often associated with vortex-glass behavior in superconductors, a detailed analysis of DC magnetization, AC susceptibility, field dependence, and magnetic memory effects demonstrates that the observed phenomena are not related to superconductivity. Instead, the data are consistent with glassy magnetic freezing of interacting clusters. Compositional and structural analysis identifies covellite (CuS), one of the constituent phases in these multiphase …

Global Time-Resolved Measurements Of Inlet/Isolator Unstart Induced By Mass Injection, Andrew N. Bustard, Benjamin L. Bemis, Aaron Marques, Matthew J. Zahr, Thomas J. Juliano

Publications

The inner surface pressure of an axisymmetric inlet/isolator model was measured using anodized-aluminum pressure-sensitive paint (PSP) viewing through cast acrylic. Temperaturesensitive paint was utilized to correct for the PSP’s temperature sensitivity. The model was tested under Mach 5.7 flow at 𝑹𝒆 = 7.1 ×106 /m under conventional noise conditions. Transverse jet injection with jet-to-inlet mass-flow ratios up to 0.8 was used to induce unstart in the inlet/isolator. Background-oriented schlieren visualization of the inlet shocks was collected simultaneously with the PSP to determine when the inlet unstarted. Computational fluid dynamics results were used to determine off-wall flow structures and quantify approach …

Cytotoxicity Of Bioactive Peptides From Cowpea (Vigna Unguiculata L. Walp) Against Breast Cancer Cells (Mcf-7), Dian R. Ningsih, Zusfahair Zusfahair, Ely Setiawan, Purwati Purwati, Kasta Gurning, Fitri A. Puspita Sari, Elya Widiawati

Karbala International Journal of Modern Science

Cancer is characterized by dysregulated metabolic signaling pathways, leading to uncontrolled cellular proliferation. Current cancer treatments, which involve surgery, radiotherapy, and chemotherapy, still cause adverse systemic toxicities. Accordingly, one possible effort that can be undertaken is to explore safe anticancer substances from protein sources such as peptides. Bioactive peptides can be isolated by hydrolyzing cowpea (Vigna unguiculata L. Walp) protein with trypsin. The objectives of this study were to isolate and fractionate bioactive peptides from cowpea, to determine the anticancer activity of peptide fractions, to identify active peptide fractions as anticancer agents using Liquid Chromatography High Resolution Mass Spectrometry …

Exogenous Ribosome Incorporation Induces Lineage Transdifferentiation In Intestinal And Liver Cancer Cells, Haoxuan Gu, Nadia Wahyuningsih, Keisuke Yamashita, Shota Inoue, Fuchao Tan, Mani Sharaki, Muhaimin Rifa’I, Kunimasa Ohta

Karbala International Journal of Modern Science

It has previously been shown that exogenous bacterial ribosomes added to somatic cells and various cancer cell lines generate ribosome-induced cell clusters (RICs) capable of transdifferentiating into multiple cellular lineages. However, the scope of ribosome-induced transdifferentiation in cancer cells remains poorly understood. This study aimed to analyze the effects of exogenous ribosome incorporation on human cancer cell lines, specifically the intestinal epithelial cell line Caco-2 and the hepatocellular carcinoma cell line HepG2. Caco-2 and HepG2 cells were cultured with purified bacterial ribosomes in human ES/iPS cell medium after trypsinization, resulting in the formation of ribosome-induced Caco-2 (RICs-Ca) and HepG2 (RICs-He) …

Tapping Into The Ocean’S Hidden Energy: Feasibility Of A 5 Mw Otec Installation In North Bali, Widodo Setiyo Pranowo, Yani Permanawati, Gisela Malya Asoka Anindita, Agung Kurniawan, Albertus Sulaiman, Johar Setiyadi, Safri Burhanuddin, Ivonne Milichristi Radjawane, Hansan Park, Endro Sigit Kurniawan

Karbala International Journal of Modern Science

Indonesia is an archipelagic country surrounded by water and faces energy challenges due to the low use of renewable energy. Among the potential renewable options, marine energy is a particularly suitable resource given the country’s geographical nature. Based on this discussion, seawater temperature can be used as an alternative ocean thermal en-ergy known as ocean thermal energy conversion (OTEC) by using the difference in sea surface and deep-sea water temperatures. Therefore, this study aimed to examine OTEC installations in North Bali waters using closed-cycle OTEC calculations for a 5 MW system. Following this objective, we examined the water conditions by …

Deciphering The Potential Of Monopterus Albus Protein Hydrolysate As A Therapeutic Candidate Against Cervical Cancer By Integrating Content Analysis, Network Pharmacology, And Molecular Docking, Okid Parama Astirin, Widya Mega Rahmawati, Elisa Herawati, Tetri Widiyani, Lili Pandan Sari, Sherly Octaviana

Karbala International Journal of Modern Science

Cervical cancer has a high incidence rate in women, making the development of cancer drugs increasingly urgent. Asian swamp eel protein hydrolysate shows great promise as an anticancer candidate. This study aimed to reveal the potential of Asian swamp eel protein hydrolysate as an anticancer candidate in the cervix. Asian swamp eel protein hydrolysate was produced by hydrolyzing flesh with the enzyme alcalase. Compounds and peptides were identified using LC-HRMS. These compounds and peptides were analyzed using network pharmacology, gene ontology, and molecular docking. The results identified 153 endogenous compounds, including fatty acids and peptides. The key proteins targeted by …

Crystal Structural Analysis Of Medieval Human Bones Using Wide-Angle X-Ray Scattering, Selly Altangerel, Leslie Gracia

DePaul Discoveries

Female human second metacarpal (mc2) bones from a medieval cemetery at Wharram Percy, England, were studied using high-energy Wide-Angle X-ray Scattering (WAXS) at beamline 1-ID of the Advanced Photon Source at Argonne National Laboratory. The age-at-death of 33 samples was determined from molar wear and classified into 3 groups:  18-30, 30-50, and 50+ years old.  Rietveld refinements of the WAXS data were performed to obtain lattice parameters of the hexagonal carbonated apatite phase (cAp). Individual fittings for cAp peaks 00.2, 00.4, and 31.0 were performed to obtain their widths and correlate them to collagen retention. For the three samples described …

Capturing An Electron In The Virtual State, Alok Nath Singh, Bibek Bhandari, Rafael Sánchez, Andrew N. Jordan

Mathematics, Physics, and Computer Science Faculty Articles and Research

We address a foundational question in quantum mechanics: can a particle be directly found in a classically-forbidden virtual state? We instantiate this conceptual question by investigating the traversal of electrons through a tunnel barrier, which we define in a triple quantum dot system where the occupation of the central dot is energetically avoided. The motivation behind this setup is to answer whether the central dot is occupied or not during a virtual transition when it is being explicitly monitored. We investigate this problem in two different limits of continuous measurements: the stochastic quantum diffusion and the quantum jump. We find …

Narrowband Searches For Continuous Gravitational Waves From Known Pulsars In The First Two Parts Of The Fourth Ligo–Virgo–Kagra Observing Run, A. G. Abac, I. Abouelfettouh, Teviet Creighton, Mario C. Diaz, Raul Alberto Espinosa Perez, J. Lawrence, Francisco Llamas Villarreal, Miriam Ramos Arevalo, Soma Mukherjee, Gaukhar Nurbek, Volker Quetschke, Wenhui Wang

Physics & Astronomy Faculty Publications

Rotating nonaxisymmetric neutron stars (NSs) are promising sources for continuous gravitational waves (CWs). CWs may, if detected, inform us about the internal structure and equation of state of NSs. Here, we present a narrowband search for CWs from known pulsars, for which a matched-filter search can be applied. Narrowband searches are robust to mismatches between electromagnetic (EM) and gravitational emissions, in contrast to fully targeted searches where they are assumed to be phase-locked. In this work, we search for the CW counterparts emitted by 34 pulsars using data from the first and second parts of the fourth LIGO–Virgo–KAGRA observing run. …