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Multi-Color Fluorescent Microscopy And Deep Learning For Studying Eukaryotic Organelles: Unveiling Cellular Growth In A System Biology Perspective, Shixing Wang Aug 2023

Multi-Color Fluorescent Microscopy And Deep Learning For Studying Eukaryotic Organelles: Unveiling Cellular Growth In A System Biology Perspective, Shixing Wang

Arts & Sciences Graduate Student Theses and Dissertations

Eukaryotic cells are building blocks to complex living systems, characterized by membrane-bound organelles. Studying how eukaryotic organelles react to cellular growth and size increase is crucial, but it demands biochemical and biophysical manipulations, as well as quantitative observation tools in microscopy. We developed a multi-color yeast strain with tagged fluorescent proteins, enabling systematic measurements of 6 organelles inside each cell using spectral confocal microscopy. These measurements provided insights into how organelle biogenesis is coordinated with cellular size and growth rate regulation via different signaling pathways. To explore cellular growth under dynamic conditions, I utilized deep learning for organelle recognition using …


Electrically Induced Cancellation And Inversion Of Piezoelectricity In Ferroelectric Hf0.5Zr0.5O2, Haidong Lu, Dong-Jik Kim, Hugo Aramberri, Marco Holzer, Pratyush Buragohain, Sangita Dutta, Uwe Schroeder, Veeresh Deshpande, Jorge Íñiguez, Alexei Gruverman, Catherine Dubourdieu Aug 2023

Electrically Induced Cancellation And Inversion Of Piezoelectricity In Ferroelectric Hf0.5Zr0.5O2, Haidong Lu, Dong-Jik Kim, Hugo Aramberri, Marco Holzer, Pratyush Buragohain, Sangita Dutta, Uwe Schroeder, Veeresh Deshpande, Jorge Íñiguez, Alexei Gruverman, Catherine Dubourdieu

Department of Physics and Astronomy: Faculty Publications

HfO2-based thin films hold huge promise for integrated devices as they show full compatibility with semiconductor technologies and robust ferroelectric properties at nanometer scale. While their polarization switching behavior has been widely investigated, their electromechanical response received much less attention so far. Here, we demonstrate that piezoelectricity in Hf0.5Zr0.5O2 ferroelectric capacitors is not an invariable property but, in fact, can be intrinsically changed by electrical field cycling. Hf0.5Zr0.5O2 capacitors subjected to ac cycling undergo a continuous transition from a positive effective piezoelectric coefficient d33 in the pristine state to …


The Quantum Mechanical Background Of Quantum Computing, Isaac Hanna Aug 2023

The Quantum Mechanical Background Of Quantum Computing, Isaac Hanna

The Kabod

Quantum mechanics arose out of the question "Is light a particle or a wave?" and has laid forth a model of reality in which particles are modeled by wave functions. The particle is in a superposition of states and can be entangled with other particles to create more complex systems. Observation of the system collapses the wave function to a single point. By using quantum gates, we can manipulate these particles to create algorithms to solve computational problems. Quantum computing does not collapse the complexity hierarchy by providing an across the board exponential speedup but can provide such a speedup …


Topological Hall Effect In Particulate Magnetic Nanostructure, Ahsan Ullah Aug 2023

Topological Hall Effect In Particulate Magnetic Nanostructure, Ahsan Ullah

Department of Physics and Astronomy: Dissertations, Theses, and Student Research

Conduction electrons change their spin direction due to the exchange interaction with the lattice spins. Ideally, the spins of the conduction electrons follow the atomic spin adiabatically, so that spins like S1, S2, and S3 can be interpreted as time-ordered sequences t1 < t2 < t3. Such spin sequences yield a quantum-mechanical phase factor in the wave function,  →ei, where  is known as the Berry phase. The corresponding spin rotation translates into a Berry curvature and an emergent magnetic field and subsequently, Hall-effect contribution known as the topological Hall-effect. This dissertation explores topological Hall-effect in particulate magnets, where noncollinear spins are stabilized by competition between different magnetic interactions. The topologically non-trivial spin textures in these nanostructures are flower states, curling states, vortex, and magnetic bubbles, which give rise to topological Hall-effect and have finite spin chirality and Skyrmion number Q. Topological Hall-effect is investigated in noninteracting nanoparticles, exchanges coupled centrosymmetric nanoparticles, exchanges coupled non-centrosymmetric nanoparticles which possess Dzyaloshinskii-Moriya interaction (DMI), and exchanged coupled Hard and soft magnetic films. Micromagnetic modeling, simulations, analytical calculations, and experimental methods are used to determine topological Hall-effect. In very small noninteracting nanoparticles, the reverse magnetic fields enhance Q due to the flower state until the reversal occurs, whereas, for particles with a radius greater than coherence radius, the Q jumps to a larger value at the nucleation field representing the curling state. The comparisons of magnetization patterns between experimental and computed magnetic force microscopy (MFM) measurements show the presence of spin chirality. Magnetic and Hall-effect measurements identify topological Hall-effect in the exchange-coupled Co and CoSi-nanoparticle films. The origin of the topological Hall-effect namely, the chiral domains with domain-wall chirality quantified by an integer skyrmion number in Co and chiral spins with partial skyrmion number in CoSi. These spin structures are different from the Skyrmions due to DMI in B-20 crystals and multilayered thin films with Cnv symmetry. In these films THE caused by cooperative magnetization reversal in the exchange-coupled Co-nanoparticles and peripheral chiral spin textures in CoSi-nanoparticles.

Advisor: Xiaoshan Xu


Thermal Blooming With Laser-Induced Convection: Radial Basis Function Simulation, Benjamin F. Akers, Steven T. Fiorino, Jonah A. Reeger Aug 2023

Thermal Blooming With Laser-Induced Convection: Radial Basis Function Simulation, Benjamin F. Akers, Steven T. Fiorino, Jonah A. Reeger

Faculty Publications

The propagation of a high energy laser through a nearly stagnant absorbing medium is studied. The absorption values and time scale of the problem are such that the laser induces convective heat currents transverse to the beam. These currents couple to the laser via the refractive index, causing time dependent thermal blooming. A numerical method is developed and applied to the model in [ J. Electromagn. Waves Appl. 33, 96 (2019) ], using radial basis functions for spatial differencing, which allows for irregular point spacings and a wide class of geometries. Both the beam and laser-induced fluid dynamics are …


Aspects Of The Phenomenology Of Interference That Are Genuinely Nonclassical, Lorenzo Catani, Matthew Leifer, Giovanni Scala, David Schmid, Robert W. Spekkens Aug 2023

Aspects Of The Phenomenology Of Interference That Are Genuinely Nonclassical, Lorenzo Catani, Matthew Leifer, Giovanni Scala, David Schmid, Robert W. Spekkens

Mathematics, Physics, and Computer Science Faculty Articles and Research

Interference phenomena are often claimed to resist classical explanation. However, such claims are undermined by the fact that the specific aspects of the phenomenology upon which they are based can in fact be reproduced in a noncontextual ontological model [Catani et al., arXiv:2111.13727]. This raises the question of what other aspects of the phenomenology of interference do in fact resist classical explanation. We answer this question by demonstrating that the most basic quantum wave-particle duality relation, which expresses the precise tradeoff between path distinguishability and fringe visibility, cannot be reproduced in any noncontextual model. We do this by …


Direct Measurement Of The 114cd(N, Gamma)115cd Cross Section In The 1 Ev To 300 Kev Energy Range, Kofi Tutu Addo Assumin-Gyimah Aug 2023

Direct Measurement Of The 114cd(N, Gamma)115cd Cross Section In The 1 Ev To 300 Kev Energy Range, Kofi Tutu Addo Assumin-Gyimah

Theses and Dissertations

The large thermal cross section of cadmium makes it ideal for many practical applications where screening of thermal neutrons is desired. For example, in non-destructive assay techniques, or for astrophysical studies of the s-process. All such applications require precise knowledge of the neutron-capture cross section on cadmium. Although there are some data on neutron-capture cross sections particularly at thermal energies and at energies relevant for astrophysics, there is very little data at most other energies. Further, the evaluated cross sections from the ENDF and JENDL databases disagree at high energies. Therefore, there is a critical need for precise knowledge of …


Optimization Of A Ball's Launch In Sports, Andrew C. Smith, Javier E. Hasbun Aug 2023

Optimization Of A Ball's Launch In Sports, Andrew C. Smith, Javier E. Hasbun

Georgia Journal of Science

Newton's laws are used to study the effects of air resistance on an object's motion. In ball-related sports such as baseball, soccer, etc., understanding the effects of air resistance is essential to optimize ball launch performance. This performance optimization can be studied by identifying the minimal time it takes for a ball with speed to travel a certain distance. We work with two models that apply to an object's motion. One of the models assumes a linear air drag while a second model makes use of a quadratic air drag. We do investigate known differential equations for when the Magnus …


Search For Higgs Boson Decay To A Charm Quark-Antiquark Pair In Proton-Proton Collisions At √S =13 Tev, A. Tumasyan Aug 2023

Search For Higgs Boson Decay To A Charm Quark-Antiquark Pair In Proton-Proton Collisions At √S =13 Tev, A. Tumasyan

Department of Physics and Astronomy: Faculty Publications

A search for the standard model Higgs boson decaying to a charm quark-antiquark pair, H → c[], produced in association with a leptonically decaying V (W or Z) boson is presented. The search is performed with proton-proton collisions at √s = 13 TeV collected by the CMS experiment, corresponding to an integrated luminosity of 138 fb−1. Novel charm jet identification and analysis methods using machine learning techniques are employed. The analysis is validated by searching for Z → c[] in VZ events, leading to its first observation at a hadron collider with a significance …


Anomaly Detection In The Molecular Structure Of Gallium Arsenide Using Convolutional Neural Networks, Timothy Roche, Aihua W. Wood, Philip Cho, Chancellor Johnstone Aug 2023

Anomaly Detection In The Molecular Structure Of Gallium Arsenide Using Convolutional Neural Networks, Timothy Roche, Aihua W. Wood, Philip Cho, Chancellor Johnstone

Faculty Publications

This paper concerns the development of a machine learning tool to detect anomalies in the molecular structure of Gallium Arsenide. We employ a combination of a CNN and a PCA reconstruction to create the model, using real images taken with an electron microscope in training and testing. The methodology developed allows for the creation of a defect detection model, without any labeled images of defects being required for training. The model performed well on all tests under the established assumptions, allowing for reliable anomaly detection. To the best of our knowledge, such methods are not currently available in the open …


Representing Quantum Spins In Different Coordinate Systems For Modelling Rigid Body Orientation, Nadjet Zioui, Aicha Mahmoudi, Mohamed Tadjine Aug 2023

Representing Quantum Spins In Different Coordinate Systems For Modelling Rigid Body Orientation, Nadjet Zioui, Aicha Mahmoudi, Mohamed Tadjine

Karbala International Journal of Modern Science

Various methods for representing the spatial orientation and rotation of objects are presented and compared with the quantum bit state representation. By contrasting spherical, Euler angle, quaternion, and quantum spin coordinate systems, this work highlights important concepts regarding the rotation axis of the X gate. Several ambiguities and incomplete definitions associated with the qubit state representation are discussed, such as the spin around the qubit itself and the explanation of the considered rotation angles and signs. A mathematical analysis of the physical meaning of each eigenstate is provided along with a new comprehensive and meaningful YPR-based 3D representation of a …


Improving The Burt’S Sensitivity Using Noise Calibration Unit Via Crab Nebula Observations, Uday E. Jallod, Lana T. Ali, Hareth S. Mahdi, Kamal M. Abood Aug 2023

Improving The Burt’S Sensitivity Using Noise Calibration Unit Via Crab Nebula Observations, Uday E. Jallod, Lana T. Ali, Hareth S. Mahdi, Kamal M. Abood

Karbala International Journal of Modern Science

Radio observations from astronomical sources like supernovae became one the most important sources of information about the physical properties of those objects. However, such radio observations are affected by various types of noise such as those from sky, background, receiver, and the system itself. Therefore, it is essential to eliminate or reduce these undesired noise from the signals in order to ensure accurate measurements and analysis of radio observations. One of the most commonly used methods for reducing the noise is to use a noise calibrator. In this study, the 3-m Baghdad University Radio Telescope (BURT) has been used to …


Modifying The Composition Of A High Temperature Superconductor, Drue Lubanski Aug 2023

Modifying The Composition Of A High Temperature Superconductor, Drue Lubanski

Electronic Theses and Dissertations

The purpose of this research was to recreate a known superconductor, YBa2Cu3Ox, and modify it in an attempt to raise its transition temperature. A superconductor is any material that excludes magnetic flux from its interior when at a temperature below its transition temperature. A “high temperature” superconductor refers to material that shows superconductivity at or above the temperature of liquid nitrogen temperatures (77.15K).

Here we were successful in reproducing the original YBa2Cu3Ox and measuring its critical temperature; However, our efforts at raising the transition temperature have, as of yet, …


Discovery Of Gamma Rays From The Quiescent Sun With Hawc, A. Albert, R. Alfaro, C. Alvarez, J. C. Arteaga-Velázquez, D. Avila Rojas, H. A. Ayala Solares, R. Babu, E. Belmont-Moreno, C. Brisbois, K. S. Caballero-Mora, T. Capistrán, A. Carramiñana, S. Casanova, O. Chaparro-Amaro, U. Cotti, J. Cotzomi, S. Coutiño De León, E. De La Fuente, R. Diaz Hernandez, B. L. Dingus, M. A. Duvernois, M. Durocher, J. C. Diaz-Velez, R. W. Ellsworth, K. Engel, C. Espinoza, K. L. Fan, K. Fang, M. Fernandez Alonso, H. Fleischhack, N. Fraija, J. A. Garcia-Gonzalez, F. Garfias, M. M. Gonzalez, J. A. Goodman, J. P. Harding, S. Hernandez, J. Hinton, D. Huang, F. Hueyotl-Zahuantitla, P. Huntemeyer, A. Iriarte, V. Joshi, S. Kaufmann, J. Lee, J. T. Linnemann, A. L. Longinotti, G. Luis-Raya, K. Malone, O. Martinez, J. Martinez-Castro, J. A. Matthews, P. Miranda-Romagnoli, J. A. Morales-Soto, E. Moreno, M. Mostafa, A. Nayerhoda, L. Nellen, M. U. Nisa, R. Noriega-Papaqui, L. Olivera-Nieto, N. Omodei, Y. Perez Araujo, E. G. Perez-Perez, C. D. Rho, D. Rosa-Gonzalez, E. Ruiz-Velasco, H. Salazar, D. Salazar-Galeggos, A. Sandoval, M. Schneider, J. Serna-Franco, A. J. Smith, Y. Son, R. W. Springer, O. Tibolla, K. Tollefson, I. Torres, R. Torres-Escobedo, R. Turner, F. Urena-Mena, E. Varela, J. Villasenor, Xiaojie Wang, I. J. Watson, E. Willox, S. Yun-Carcamo, H. Zhou, C. De Leon Aug 2023

Discovery Of Gamma Rays From The Quiescent Sun With Hawc, A. Albert, R. Alfaro, C. Alvarez, J. C. Arteaga-Velázquez, D. Avila Rojas, H. A. Ayala Solares, R. Babu, E. Belmont-Moreno, C. Brisbois, K. S. Caballero-Mora, T. Capistrán, A. Carramiñana, S. Casanova, O. Chaparro-Amaro, U. Cotti, J. Cotzomi, S. Coutiño De León, E. De La Fuente, R. Diaz Hernandez, B. L. Dingus, M. A. Duvernois, M. Durocher, J. C. Diaz-Velez, R. W. Ellsworth, K. Engel, C. Espinoza, K. L. Fan, K. Fang, M. Fernandez Alonso, H. Fleischhack, N. Fraija, J. A. Garcia-Gonzalez, F. Garfias, M. M. Gonzalez, J. A. Goodman, J. P. Harding, S. Hernandez, J. Hinton, D. Huang, F. Hueyotl-Zahuantitla, P. Huntemeyer, A. Iriarte, V. Joshi, S. Kaufmann, J. Lee, J. T. Linnemann, A. L. Longinotti, G. Luis-Raya, K. Malone, O. Martinez, J. Martinez-Castro, J. A. Matthews, P. Miranda-Romagnoli, J. A. Morales-Soto, E. Moreno, M. Mostafa, A. Nayerhoda, L. Nellen, M. U. Nisa, R. Noriega-Papaqui, L. Olivera-Nieto, N. Omodei, Y. Perez Araujo, E. G. Perez-Perez, C. D. Rho, D. Rosa-Gonzalez, E. Ruiz-Velasco, H. Salazar, D. Salazar-Galeggos, A. Sandoval, M. Schneider, J. Serna-Franco, A. J. Smith, Y. Son, R. W. Springer, O. Tibolla, K. Tollefson, I. Torres, R. Torres-Escobedo, R. Turner, F. Urena-Mena, E. Varela, J. Villasenor, Xiaojie Wang, I. J. Watson, E. Willox, S. Yun-Carcamo, H. Zhou, C. De Leon

Physics Faculty Research & Creative Works

We report the first detection of a TeV γ-ray flux from the solar disk (6.3σ), based on 6.1 years of data from the High-Altitude Water Cherenkov (HAWC) observatory. The 0.5-2.6 TeV spectrum is well fit by a power law, dN/dE=A(E/1 TeV)-γ, with A=(1.6±0.3)x10-12 TeV-1 cm-2 s-1 and γ=3.62±0.14. The flux shows a strong indication of anticorrelation with solar activity. These results extend the bright, hard GeV emission from the disk observed with Fermi-LAT, seemingly due to hadronic Galactic cosmic rays showering on nuclei in the solar atmosphere. However, current theoretical models are unable to explain the details of how solar …


Hydrodynamic Atmospheric Escape In Hd 189733 B: Signatures Of Carbon And Hydrogen Measured With The Hubble Space Telescope, Leonardo A. Dos Santos, Antonio García Muñoz, David K. Sing, Mercedes López-Morales, Munazza K. Alam, Vincent Bourrier, Gregory W. Henry, Alain Lecavelier Des Etangs, Thomas Mikal-Evans, Nikolay K. Nikolov, Jorge Sanz-Forcada, Hannah R. Wakeford Aug 2023

Hydrodynamic Atmospheric Escape In Hd 189733 B: Signatures Of Carbon And Hydrogen Measured With The Hubble Space Telescope, Leonardo A. Dos Santos, Antonio García Muñoz, David K. Sing, Mercedes López-Morales, Munazza K. Alam, Vincent Bourrier, Gregory W. Henry, Alain Lecavelier Des Etangs, Thomas Mikal-Evans, Nikolay K. Nikolov, Jorge Sanz-Forcada, Hannah R. Wakeford

Information Systems and Engineering Management Research Publications

One of the most well-studied exoplanets to date, HD 189733 b, stands out as an archetypal hot Jupiter with many observations and theoretical models aimed at characterizing its atmosphere, interior, host star, and environment. We report here on the results of an extensive campaign to observe atmospheric escape signatures in HD 189733 b using the Hubble Space Telescope and its unique ultraviolet capabilities. We have found a tentative, but repeatable in-transit absorption of singlyionized carbon (C ii, 5.2% ± 1.4%) in the epoch of June–July/2017, as well as a neutral hydrogen (H i) absorption consistent with previous observations. We model …


The Importance Of Contrast Sensitivity, Color Vision, And Electrophysiological Testing In Clinical And Occupational Settings, Frances Silva Aug 2023

The Importance Of Contrast Sensitivity, Color Vision, And Electrophysiological Testing In Clinical And Occupational Settings, Frances Silva

Theses & Dissertations

Visual acuity (VA) is universally accepted as the gold standard metric for ocular vision and function. Contrast sensitivity (CS), color vision, and electrophysiological testing for clinical and occupational settings are warranted despite being deemed ancillary and minimally utilized by clinicians. These assessments provide essential information to subjectively and objectively quantify and obtain optimal functional vision. They are useful for baseline data and monitoring hereditary and progressive ocular conditions and cognitive function. The studies in this dissertation highlight the value of contrast sensitivity, color vision, and cone specific electrophysiological testing, as well as the novel metrics obtained with potential practical clinical …


Design Of A Resonant Optical Cavity For Imaging Magneto-Optically Active Thin Film Samples, Cody Robert Brelage Aug 2023

Design Of A Resonant Optical Cavity For Imaging Magneto-Optically Active Thin Film Samples, Cody Robert Brelage

Graduate Theses - Physics and Optical Engineering

This document describes the design and fabrication of an optical resonator system to investigate magneto-optic properties of thin film samples. This system uses an open-air optical resonator to enable photons to make multiple passes through each thin film and thus increase the magnitude of the Faraday rotation that each sample imposes onto the light that exits the system. This system promises many future experiments to study the magneto-optic properties of thin film and nano-particle samples. Using an optical resonator to enhance Faraday rotation should enable an improved signal-to-noise ratio in taking measurements and images with a photodetector.


A Computational Kinetics Model To Quantify Radiation Induced Chemical Products Of Atmospheric Gas Mixtures, Patrick Ables Aug 2023

A Computational Kinetics Model To Quantify Radiation Induced Chemical Products Of Atmospheric Gas Mixtures, Patrick Ables

Dissertations

This research is focused on the development of a computational model which will calculate the effects of radiation on the chemical composition of the atmosphere. The approach utilizes the open-source chemical kinetics toolkit Cantera to model the creation of radiation-induced reactant species within irradiated air mixtures. Chemical solutions are iteratively stepped toward chemical equilibrium within a ‘constantly stirred’ (homogeneous) reactor of fixed volume. Three different radiation chemistry models are implemented in several different pulsed and continuous radiation schemes. The first model includes the mechanisms and rates of a pulse radiation model from the literature to test the validity of the …


Strong Ultrafast Demagnetization Due To The Intraband Transitions, G. P. Zhang, Mitsuko Murakami Aug 2023

Strong Ultrafast Demagnetization Due To The Intraband Transitions, G. P. Zhang, Mitsuko Murakami

Symposium Projects

Demagnetization in ferromagnetic transition metals driven by a femtosecond laser pulse is a fundamental problem in solid state physics, and its understanding is essential to the development of spintronic devices. Ab initio calculation of time-dependent magnetic moment in the velocity gauge so far has not been successful in reproducing the large amount of demagnetization observed in experiments. In this work, we propose a method to incorporate intraband transitions within the velocity gauge through a convective derivative in the crystal momentum space. Our results for transition-element bulk crystals (bcc Fe, hcp Co and fcc Ni) based on the time-dependent quantum Liouville …


Magnetic-Field-Driven Director Configuration Transitions In Radial Nematic Liquid Crystal Droplets, S. Ettinger, C. G. Slaughter, S. H. Parra, J. M. Kikkawa, Peter J. Collings, A. G. Yodh Aug 2023

Magnetic-Field-Driven Director Configuration Transitions In Radial Nematic Liquid Crystal Droplets, S. Ettinger, C. G. Slaughter, S. H. Parra, J. M. Kikkawa, Peter J. Collings, A. G. Yodh

Physics & Astronomy Faculty Works

We study the director configurations of nematic liquid crystal (NLC) droplets with homeotropic anchoring in a magnetic field and report observation of a magnetic-field-driven transition from a deformed radial to an axial-with-defect configuration. Magnetic-field-induced transitions in NLC droplets differ fundamentally from the traditional planar Freedericksz transition due to the spherical droplet geometry and resulting topological defect. This transition has been studied theoretically, but the director configurations and mechanism of defect evolution in an applied magnetic field have yet to be observed experimentally. To this end, we combine polarized optical microscopy with a variable electromagnet (≤ 1 T) for continuous observation …


Simulating Strongly Coupled Many-Body Systems With Quantum Algorithms, Manqoba Qedindaba Hlatshwayo Aug 2023

Simulating Strongly Coupled Many-Body Systems With Quantum Algorithms, Manqoba Qedindaba Hlatshwayo

Dissertations

The complexity of the nuclear many-body problem is a severe obstacle to finding a general and accurate numerical approach needed to simulate medium-mass and heavy nuclei. Even with the advent of exascale classical computing, the impediment of exponential growth of the Hilbert space renders the problem intractable for most classical calculations. In the last few years, quantum algorithms have become an attractive alternative for practitioners because quantum computers are more efficient in simulating quantum physics than classical computers. While a fully fault-tolerant universal quantum computer will not be realized soon, this dissertation explores quantum algorithms for simulating nuclear physics suitable …


Hybridly Integrated Semiconductor Lasers And Amplifiers On Iii-V/Si3n4 Platform For Beam Combining And Other Advanced Applications, Siwei Zeng Aug 2023

Hybridly Integrated Semiconductor Lasers And Amplifiers On Iii-V/Si3n4 Platform For Beam Combining And Other Advanced Applications, Siwei Zeng

All Dissertations

Photonic integrated circuits (PICs) are devices that integrate multiple photonic functions on a small chip and allow for accurate dimension control and massive production. Similar to electronic integrated circuits, PICs can significantly reduce the system cost, size, weight, and operation power (CSWaP). Recently, the PIC technology has transformed many optical technologies which traditionally rely on tabletop systems and bulky components, such as optical interconnects, nonlinear optics, and quantum photonics, into a chip-scale platform. This device and system miniaturization has successfully led to a wide range of practical applications in computing, sensing, spectroscopy, and communication. However, the traditional passive PIC platform …


Modelling Galaxy Cluster Triaxiality In Stacked Cluster Weak Lensing Analyses, Hao-Yi Wu Aug 2023

Modelling Galaxy Cluster Triaxiality In Stacked Cluster Weak Lensing Analyses, Hao-Yi Wu

Physics Faculty Publications and Presentations

Counts of galaxy clusters offer a high-precision probe of cosmology, but control of systematic errors will determine the accuracy of this measurement. Using Buzzard simulations, we quantify one such systematic, the triaxiality distribution of clusters identified with the redMaPPer optical cluster finding algorithm, which was used in the Dark Energy Survey Year-1 (DES Y1) cluster cosmology analysis. We test whether redMaPPer selection biases the clusters’ shape and orientation and find that it only biases orientation, preferentially selecting clusters with their major axes oriented along the line of sight. Modelling the richness–mass relation as log-linear, we find that the log-richness amplitude …


Modulation Of Voltage-Gating And Hysteresis Of Lysenin Channels By Cu2+ Ions, Andrew Bogard, Pangaea W. Finn, Aviana R. Smith, Ilinca M. Flacau, Rose Whiting, Daniel Fologea Aug 2023

Modulation Of Voltage-Gating And Hysteresis Of Lysenin Channels By Cu2+ Ions, Andrew Bogard, Pangaea W. Finn, Aviana R. Smith, Ilinca M. Flacau, Rose Whiting, Daniel Fologea

Physics Faculty Publications and Presentations

The intricate voltage regulation presented by lysenin channels reconstituted in artificial lipid membranes leads to a strong hysteresis in conductance, bistability, and memory. Prior investigations on lysenin channels indicate that the hysteresis is modulated by multivalent cations which are also capable of eliciting single-step conformational changes and transitions to stable closed or sub-conducting states. However, the influence on voltage regulation of Cu2+ ions, capable of completely closing the lysenin channels in a two-step process, was not sufficiently addressed. In this respect, we employed electrophysiology approaches to investigate the response of lysenin channels to variable voltage stimuli in the presence …


Self-Calibrating Optical Galaxy Cluster Selection Bias Using Cluster, Galaxy, And Shear Cross-Correlations, Chenxiao Zeng, Andrés N. Salcedo, Hao-Yi Wu, Christopher M. Hirata Aug 2023

Self-Calibrating Optical Galaxy Cluster Selection Bias Using Cluster, Galaxy, And Shear Cross-Correlations, Chenxiao Zeng, Andrés N. Salcedo, Hao-Yi Wu, Christopher M. Hirata

Physics Faculty Publications and Presentations

The clustering signals of galaxy clusters are powerful tools for self-calibrating the mass–observable relation and are complementary to cluster abundance and lensing. In this work, we explore the possibility of combining three correlation functions – cluster lensing, the cluster–galaxy cross-correlation function, and the galaxy autocorrelation function – to self-calibrate optical cluster selection bias, the boosted clustering and lensing signals in a richness-selected sample mainly caused by projection effects. We develop mock catalogues of redMaGiC-like galaxies and redMaPPer-like clusters by applying halo occupation distribution models to N-body simulations and using counts-in-cylinders around massive haloes as a richness proxy. In addition …


Spectroscopy Of Highly Charged Ions For Astrophysical And Laboratory Plasma Diagnostics, Yang Yang Aug 2023

Spectroscopy Of Highly Charged Ions For Astrophysical And Laboratory Plasma Diagnostics, Yang Yang

All Dissertations

Electron beam ion traps (EBITs) are small-scale laboratory devices that create and trap highly charged ions (HCI) for spectroscopic studies. These devices create plasma conditions resembling astrophysical environments like stellar winds and supernova remnants, providing valuable insights into astrophysical plasma. Theoretical models for such systems require incorporating relativistic and quantum electrodynamics effects, making experimental studies of HCIs essential for benchmarking these theories.

Spectral analysis of astrophysical and laboratory plasma requires understanding the ionization balance. Accurate atomic data, including excitation, ionization, and recombination cross sections, along with precise knowledge of operating conditions such as electron beam density, electron beam energy, and …


Precise Determination Of Charge Distributions In Electron Irradiated Polymers Via Pulsed Electroacoustic Measurements With Applications To Spacecraft Charging, Zachary Gibson Aug 2023

Precise Determination Of Charge Distributions In Electron Irradiated Polymers Via Pulsed Electroacoustic Measurements With Applications To Spacecraft Charging, Zachary Gibson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Understanding how charge builds up and moves around in materials that are highly insulating, such as dielectrics, is important for many applications from power transmission to spacecraft charging. The leading cause of issues in spacecraft due to interactions with the space environment is spacecraft charging. That is, the accumulation of charge on insulating materials leads to arcing and sparking aboard the spacecraft. The most critical charging occurs due to electrons in a particular energy range of 10-50 keV. Electrons with these energies can travel 1’s to 10’s of microns into relevant materials. To measure where the charge is embedded and …


The Effect Of Package Types On Fresh Peaches In The Direct-To-Consumer Distribution Environment, Brennan Lytle Aug 2023

The Effect Of Package Types On Fresh Peaches In The Direct-To-Consumer Distribution Environment, Brennan Lytle

All Theses

The direct-to-consumer (DTC) shipping mode presents new opportunity for fresh peach sales in North America where demand over the past four decades has steadily declined. The hazards in this distribution mode are severe, and fresh peaches are fragile emphasizing the need for proper protection. A full analysis that not only encompasses the effects of the direct-to-consumer distribution environment, but also incorporates analyses of the environmental and economic impact of the packages utilized for transit of peaches is necessary. In this study, we use the metrics of peach grade, firmness, soluble solids concentration, and percent softness before and after the distribution …


Etching Of Silicon Wafer In Preparation Of Graphene Transfer, Floyd T. Lancaster Iii Aug 2023

Etching Of Silicon Wafer In Preparation Of Graphene Transfer, Floyd T. Lancaster Iii

Graduate Theses and Dissertations

Following the research done on graphene looking at its unique properties it has been found that graphene can be used as a varying capacitor. What has been observed is that graphene acts almost like a torrential ocean constantly fluctuating. What we use is a silicon wafer with multiple etched layers to create a stable platform on which to capture this energy. In this paper we will discuss the general setup and step-by-step procedures required to create a functioning variable capacitor out of graphene, gold, and Silicon dioxide (SiO2) substrate. Electron Beam Lithography (EBL) is used to create the initial design …


Fem Simulations Of Plasmon Field Enhancement In Gold Nanoparticle Dimers And Gold Nanoparticle-Nanorod Dimers, Edward J. Lipchus Aug 2023

Fem Simulations Of Plasmon Field Enhancement In Gold Nanoparticle Dimers And Gold Nanoparticle-Nanorod Dimers, Edward J. Lipchus

Graduate Masters Theses

Plasmon resonance refers to the collective oscillation of free electrons in a nanomaterial in response to an incident electromagnetic field. When two plasmonic nanoparticles are placed close together, their localized surface plasmon resonances can couple and interact. The resulting plasmonic coupling leads to the formation of new plasmonic modes in the dimer system, significantly enhancing the electromagnetic fields in the vicinity of the nanoparticles, with various interesting and potentially useful applications. This thesis investigates the optical field enhancement arising from gold nanoparticle dimers in an aqueous dielectric medium, using the Finite Element Method simulation software COMSOL Multiphysics. The simulations provide …