Digital Commons Network^™

A New Parsimony-Based Method For Reconstructing Sequences Of Developmental Events And Estimating Rates Of Intraspecific Variation, With Applications To Trilobites, Alexander Benjamin Bradley

Graduate Theses, Dissertations, and Problem Reports (ETD)

Ontogenetic Sequence Analysis (OSA) is a method for reconstructing multiple sequences of abrupt phenotypic transformations (developmental events) for sampled populations of any kind of organism. It makes use of cladistic parsimony software to produce a network, or graph, whose vertices represent unique phenotypes at different stages of maturity (“semaphoronts”) and whose edges describe the developmental events occurring between semaphoronts. It is a powerful tool for constraining the range of developmental variation possible for a given species and generating sample statistics capable of identifying both the most common and the outlier ontogenetic sequences. However, OSA has seen little use since its …

Development Of Novel Methods For Investigative Leads In Firearm And Explosive Related Incidents, Addio Joseph Fiordigigli Jr.

Graduate Theses, Dissertations, and Problem Reports (ETD)

Criminal outbreaks and gun violence persist as a multifaceted global crisis, marked by escalating rates of homicide, suicide, and terrorism that destabilize communities and strain public resources. The proliferation of illicit firearms and homemade explosive devices, along with the complexity of modern criminal networks, necessitates innovative scientific tools to strengthen preventive intelligence operations and ensure that the legal process is grounded in physical evidence. More efficient detection of traces left behind at a crime scene can help prevent further harm or injury from follow-up attacks. This study aims to develop and evaluate new triage methods for characterizing gunshot residues (GSR) …

Optimization Of The Cmc Algorithm, Christopher Joseph Moner

Graduate Theses, Dissertations, and Problem Reports (ETD)

Cartridge cases recovered from discharged firearms contain tool marks produced by the internal mechanisms of said firearm. Firearm and tool mark examiners com pare these marks to determine whether two cartridge cases originated from the same firearm. Traditional comparison methods have been criticized for their subjective nature and reliance on examiner interpretation rather than objective decision thresholds. The Congruent Matching Cells (CMC) algorithm was developed as a quantitative, objective method for tool mark comparison. CMC is a surface topography correlation algorithm that partitions a tool mark into small regions, or cells, and evaluates their similarity using the areal cross-correlation function …

Global Weak Solutions Of Optical Variational Wave System, Shahrazad Hamed Alnafie

Graduate Theses, Dissertations, and Problem Reports (ETD)

The coupling of a variational wave equation with Maxwell’s equations gives rise to the optical variational wave system, a hyperbolic PDE system that models the director field of the nematic liquid crystals. This system presents unique analytical challenges that have not been addressed in the existing literature. In this dissertation, we study the one-dimensional case of this system.

We establish the global existence of conservative weak solutions to the associated Cauchy problem. The hyperbolic system is derived using the energy variational method. Through a sequence of suitable coordinate transformations, we reformulate the system while preserving its hyperbolicity. Due to degeneracy …

I Think, Therefore I Can: Self-Efficacy, Self-Regulation, And Sense Of Belonging In Introductory Physics, Danielle Christine Maldonado

Graduate Theses, Dissertations, and Problem Reports (ETD)

Cognitive and affective beliefs in physics classrooms are important indicators of student success beyond traditional measurements of academic performance. This body of work explores major beliefs and processes, including self-efficacy, self-regulation, and sense of belonging, as they relate to academic achievement among introductory undergraduate physics students. First, this dissertation explores the development of physics self-efficacy and physics sense of belonging, two highly correlated variables. This work identifies unique sources of physics self-efficacy and sense of belonging development from current and prior academic experiences, personality factors, and demographic variables. Then, relationships between early- semester self-efficacy and sense of belonging, mid-semester …

Reclaiming Agency: Ai Hallucinations And Translingual Interrogations In The City Tech Writing Center,, Joseph Franklin, Anna Laura Falvey

Publications and Research

No abstract provided.

Evaluation Of Potential Factors Limiting The Expansion Of Invasive Carp (Hypophthalmichthys Spp.) In The Ohio River Basin, Erin Shepta

Graduate Theses, Dissertations, and Problem Reports (ETD)

The introduction of aquatic invasive species is one of the greatest threats to freshwater biodiversity around the world. Two species of invasive carp, bighead carp (Hypophthalmichthys nobilis) and silver carp (H. molitrix) have spread throughout much of the Mississippi River Basin, resulting in serious ecological impacts to native communities. Their spread in the Ohio River, a major tributary of the Mississippi River, appears to have slowed, with limited evidence of upstream advancements. Here, we investigated abiotic and biotic factors that may be contributing to the reduced spread of invasive carp in the Ohio River Basin. Generally, …

Data-Driven Methodologies For Mapping Cultural Heritage: The Case Of The National Coal Heritage Area, West Virginia, Usa, Hossain Mohammad Nahyan

Graduate Theses, Dissertations, and Problem Reports (ETD)

The objective of this dissertation was to develop a comprehensive, data-driven spatial framework for characterizing the complex cultural landscape of the National Coal Heritage Area (NCHA) in West Virginia. By transitioning away from traditional, heuristic spatial mapping, this research integrates advanced spatial statistics, machine learning, and GIS-based methodologies to objectively quantify the physical, visual, and cultural dimensions of the post-mining environment. The research is structured around three interconnected empirical studies, each addressing a specific scale of the Landscape Character Assessment (LCA) framework to support heritage conservation and sustainable spatial planning. The first paper focused on landform classification, developing an automated …

Dataless Neural Networks For Boolean Satisfiability And Network Optimization, Andrew Evan Gautier

Graduate Theses, Dissertations, and Problem Reports (ETD)

Combinatorial optimization problems (COPs) require searching over a finite solution space subject to constraints, with the goal of satisfying an objective function. They arise in operations research, scheduling, resource allocation, circuit design, and many other fields. Many problems in combinatorial optimization (including satisfiability and network design) are NP-hard. Traditionally, researchers have built approximate solvers that return near- optimal solutions efficiently by developing increasingly sophisticated heuristics and meta- heuristics. Deep learning has provided new opportunities for improving combinatorial solvers by leveraging neural guidance to prune the search space. Traditional neural networks have distinct drawbacks in this context: separate training and …

Comparing Unet And Hrnet For Geomorphic Feature Extraction From Digital Terrain Model-Derived Land Surface Parameters, Behnam Solouki

Graduate Theses, Dissertations, and Problem Reports (ETD)

Automated extraction of geomorphic features from high spatial resolution terrain data is important for environmental monitoring, geohazard assessment, and landscape change analysis. This study compares two convolutional neural network architectures, UNet and High-Resolution Network (HRNet), for semantic segmentation of mine benches and sinkholes from lidar-derived digital terrain models and land surface parameters. Mine benches represent anthropogenic, elongated, stepped landforms associated with historic surface mining, whereas sinkholes are natural, compact depressions common in karst terrain. Three terrain-derived input layers were used: square-root-transformed slope, broad-scale topographic position index, and fine-scale annulus topographic position index. Models were trained using five training sample sizes, …

Classifying Surfaces With Handle Decomposition, Elizabeth Sipes

Murray State Theses and Dissertations

Among topological spaces, manifolds draw a lot of interest. An
n-manifold is a space that is locally like R^n. Manifolds of dimension 2
are called surfaces. Using handle decomposition, we decompose surfaces
into k-handles, where 0< =k< =2. Techniques such as handle sliding and
handle cancellation allow us to get a more favorable representation of
our surface. We use these tools and calculation of the fundamental group
to classify all compact surfaces.

Comparison Of Push-Pull Air Curtain To Overhead Downdraft Systems On Aerosol Containment And Distribution In Controlled Environments, Manal Mutairi

Graduate Theses, Dissertations, and Problem Reports (ETD)

Abstract

Comparison of Push-Pull Air Curtain to Overhead Downdraft Systems on Aerosol Containment and Distribution in Controlled Environments.

This dissertation looks at the ongoing issue of tiny airborne particles created during medical and dental procedures and evaluates ways to reduce the risk of exposure for healthcare workers and patients to these particles. The first study focuses on the size, how long particles stay in the air, and how far they travel from common medical procedures that create aerosols, showing that tiny particles (less than 5 µm) can stay in the air long enough to escape basic droplet controls. As a …

Timing, Spectral, And Single-Pulse Properties Of Radio Pulsars, Evan Francis Lewis

Graduate Theses, Dissertations, and Problem Reports (ETD)

Radio pulsars are highly magnetized, rapidly rotating neutron stars which emit beams of radio waves from their magnetic poles. Their incredible rotational stability allows for their use in a variety of high-energy astrophysical studies, though the details of their internal structure and emission mechanisms are still unknown. We use observations of a cross-section of the pulsar population in order to investigate the nature of their evolution, their emission properties, and their environments.

First we derive timing solutions for three pulsars discovered through their sporadic single pulses. It was possible to obtain timing solutions through a set of single-pulse times of …

Preliminary Analysis Of Soil Volatile Organic Compounds As Soil Health Indicators, Thorne Taul

Graduate Theses, Dissertations, and Problem Reports (ETD)

Over the past decade, soil health (SH) has gained popularity due to the novelty of sustainable soil use related to human wellbeing. Soil health describes the overall quality of soil and its capacity to function over time. As interest in SH grows, researchers continue to explore new soil health indicators that can improve knowledge on how soil health is assessed and managed. Some indicators directly reflect soil health status, and some indirectly relate to processes and functions occurring within the soil. Volatile organic compounds (VOCs) are naturally occurring compounds that play a role in multiple soil processes. They are associated …

The Deposition, Prevalence, And Persistence Of Gunshot Residue In Standard And Less Lethal Ammunition, Liliana Claire Barbosa

Graduate Theses, Dissertations, and Problem Reports (ETD)

During the discharge of a firearm, gunshot residue (GSR) is released and settles into nearby surfaces, leaving traces that can provide valuable information for forensic investigations. This study aims to improve understanding of the deposition, prevalence, and persistence of standard and less-lethal ammunition through an analytical framework that examines collection and analysis protocols, revealing connections among multiple traces for effective use in investigations and courtroom proceedings.

Research into the chemical residues of less lethal ammunition (LLA) is a critical frontier in shooting investigations. While standard leaded ammunition has over a century of established literature, the chemical fingerprints of LLA residues …

Sedimentological And Geochemical Investigation Of The Origin Of Upper Pennsylvanian Black Shales, East-Central Appalachian Basin, Tyler Hickey

Graduate Theses, Dissertations, and Problem Reports (ETD)

In the east-central Allegheny foreland basin, laminated black shales overlying Upper Pennsylvanian Glenshaw Fm. coal seams record paleoenvironmental conditions associated with the termination of peat swamp deposition before, during, and after the Carboniferous Coal Forest Collapse (CCFC), a major paleobotanical evolutionary event during the Late Paleozoic Ice Age (LPIA) that contributed to extinction of lepidodendrons near the Desmoinesian-Missourian boundary (~306 Ma). Previous investigations of the CCFC commonly implicate an episode of aridification during intensification of LPIA glaciation that stressed the lepidodendrons beyond their ecological tipping point; however, the cause of this aridification is unclear. An investigation of Glenshaw Fm. black …

Adventures In Black Hole Binary Waveform Modeling, Siddharth Mahesh

Graduate Theses, Dissertations, and Problem Reports (ETD)

The modeling of black hole binaries requires accurate descriptions of both their relativistic vacuum dynamics and their interaction with surrounding astrophysical environments. Although these problems are often treated separately, this dissertation develops a unified view: key observables of black hole binary systems can be understood by identifying the dynamical instabilities that control their evolution. In the vacuum problem, the relevant unstable structure is associated with the remnant spacetime and its role in shaping the merger-ringdown gravitational waveform. In the environmental problem, the relevant instability is the epicyclic instability of orbits in the binary potential, which controls the location and evolution …

Studies On The Depth Formula And On Reducing Dimensions, Brian Mccourt Laverty

Graduate Theses, Dissertations, and Problem Reports (ETD)

This dissertation presents the author’s recent research, conducted under the supervision of Professor Olgur Celikbas, and based on two articles—one published and one in progress. These works develop two closely related research directions in commutative algebra. Together, they contribute to the subject by addressing aspects of existing conjectures, establishing new results, and introducing methods for studying homological invariants.

The first research direction concerns the depth formula, namely the equality \[ \depth_R(M)+\depth_R(N)=\depth(R)+\depth_R(M\otimes_RN) \] where $M$ and $N$ are finitely generated $R$-modules. A classical result of Auslander \cite{Aus} shows that the depth formula holds provided that either $M$ or $N$ has finite …

A Digital Calibration Source For 21 Cm Cosmology Telescopes, Kalyani Balkrishna Bhopi

Graduate Theses, Dissertations, and Problem Reports (ETD)

Precise calibration of radio telescope beams and gains is a central requirement for 21 cm intensity mapping experiments, which aim to measure large scale cosmological structure through the redshifted emission line of neutral hydrogen. Bright astrophysical foregrounds dominate the sky at these frequencies, and separating them from the cosmological signal demands precise control over instrumental systematics, particularly the telescope beam and its frequency-dependent response. Existing aerial calibration sources are incoherent broadband emitters, detectable only as total power. They provide no direct phase information and suffer from poor sensitivity in low signal-to-noise regimes.

We present the Precision Emitter for 21cm Array …

2025 - Tennessee Climate Snapshot, Tennessee Climate Office, East Tennessee State University

Tennessee Climate Office Monthly Reports

No abstract provided.

Semi-Supervised Learning For Annotation And Representation Of Single-Cell Rna Sequencing And Spatial Transcriptomics Data, Haoran Liu

Dissertations

Semi-supervised learning has emerged as a powerful paradigm for analyzing single-cell RNA sequencing (scRNA-seq) and spatial transcriptomics (ST) data, where full annotation is often costly or impractical. scRNA-seq technologies measure the expression of thousands of genes across tens of thousands of cells, whereas ST additionally captures the spatial coordinates of gene expression within intact tissue sections. Annotation is a key step in both scRNA-seq and ST analysis pipelines, aiming to identify cell types, spatial domains, and latent biological structures. However, most existing annotation approaches rely on separate clustering methods that are typically fully unsupervised and fail to leverage side information …

Beyond Words: A Systematic Multimodal Framework For Text, Images, And Extreme Helpfulness In Online Reviews, Alvaro J. Aguado Marin

Dissertations

Online product reviews have become increasingly multimodal, combining text with media-rich elements such as images. However, academic research has largely examined textual features in isolation, overlooking how visual content and its interaction with text shape perceived helpfulness. This dissertation addresses that gap by developing and empirically validating a comprehensive framework capturing how textual, visual, and contextual features collectively influence review evaluation. Grounded in the Elaboration Likelihood Model (ELM) and extended through the Text-Image Elaboration Likelihood Model (TI-ELM), the framework advances understanding of how consumers process content from both user- and business-generated sources. It also lays the foundation for examining emerging …

Computational Design Of Nanoporous Materials For The Adsorption Of Per- And Polyfluoroalkyl Substances, Daniel D. Mottern

Dissertations

Per- and polyfluoroalkyl substances (PFAS) are a large family of chemicals that have seen wide usage due to their fluorinated carbon backbone. The presence of strong C-F bonds in the backbone lends PFAS molecules high thermal and chemical stability, as well as strong hydrophobicity and lipophobicity. This combination of properties has led to heavy use of PFAS as surfactants, non-stick coatings, and aqueous foam forming films and flame retardants. However, these properties bring their own consequences. The high chemical and thermal stability of PFAS renders them persistent, with the C-F bonds resisting naturally occurring forms of degradation. Existing forms of …

Computational Methods For Single-Cell And Multi-Omic Data Integration And Regulatory Network Inference, Jianlan Ren

Dissertations

Single-cell and multi-omic technologies have transformed the dissection of cellular heterogeneity and regulatory dynamics in health and disease. However, the high dimensionality, technical variability, and biological complexity of these datasets present significant challenges for integration, annotation, and interpretation. In this dissertation, a suite of computational approaches is introduced to address key problems in single-cell and multi-omic data analysis through model-based innovations and applied statistical frameworks.

First, a constrained deep learning framework for single-cell data integration, label transfer, and clustering is proposed. By incorporating biologically motivated constraints into the training process, robust performance is achieved across simulated and benchmark datasets spanning …

Data-Driven Analysis And Atomistic Simulations Of Next-Generation Materials For Energy Conversion And Storage, Yuliang Shi

Dissertations

Metal-organic frameworks (MOFs), with their modular architectures and tunable properties, represent an especially rich domain for accelerated material design and discovery for a range of diverse applications. Within this class of multifunctional materials, two-dimensional (2D) electrically conductive MOFs (EC MOFs) are of particular interest, as their 7r-stacked layered structures combine permanent porosity with electronic conductivity, enabling potential breakthroughs in energy storage, energy conversion, and quantum sensing. But the discovery and design of new EC MOFs based on expensive experimental screening is increasingly impractical due to the infinite chemical space. Furthermore, the practical implementation of EC MOFs for specific tasks depends …

A Novel Mathematical Model Of Hiv Transmission Incorporating The Effects Of Treatment And Pre-Exposure Prophylaxis: Sensitivity Analysis And Numerical Simulations, Erick Manuel Delgado Moya

Mathematical Modelling and Numerical Simulation with Applications

Human immunodeficiency virus (HIV) continues to be a public health problem in many countries of the world, and Pre-exposure prophylaxis (PrEP) is a preventive method for HIV, which has shown great efficacy and is in use worldwide. This work presents a new mathematical model for HIV transmission incorporating PrEP use and evaluates the impact of PrEP along with its increasing use in a population. The construction of the model takes into account three forms of diagnosis: diagnosis of individuals in risky sexual contact, diagnosis after risky contact (diagnosis in the undiagnosed infected compartment), and diagnosis associated with attempting to enter …

Real-Time Deep Learning Detection Of Toraja Carving Motifs Using Yolo11m For Cultural Heritage Preservation, Herman Herman, Farid Wajdi Mufti, Abdul Rachman Manga, Haidawati Nasir

Knowledge Engineering and Data Science

Toraja carvings are an important part of Indonesia’s cultural heritage, rich in symbolic, aesthetic, and philosophical meaning. However, the identification and preservation of carving motifs still rely on subjective, time-consuming manual processes, limiting scalability and inconsistent knowledge transmission. From a Knowledge Engineering and Cognitive Data Science perspective, this challenge highlights the need for mechanisms that can transform visual cultural artifacts into structured, machine-interpretable knowledge. This study investigates the use of the YOLO11m model as a data-driven approach for modeling cultural knowledge through automated detection of three Toraja carving motifs: pa_tedong, pa_kapu_baka, and pa_manu_londongan using original images collected directly from traditional …

(R2151) Error Estimates Of Barycentric Lagrange Interpolation, Alvira Yawar, Swarnima Bahadur

Applications and Applied Mathematics: An International Journal (AAM)

Barycentric interpolation, which comes from Lagrange interpolation, is a useful method in numerical analysis. In this research paper, we explain how the barycentric interpolation formula is derived and discuss its features. We compare its stability and performance with the traditional Lagrange formula. First, we show how to get the barycentric formula from the Lagrange polynomial and present it as a rational function. We also provide an estimate of the error. Then, we use numerical examples to show that the barycentric formula is more stable and works better, especially when the degree of interpolation is high. Our results show that the …

Analysis Of Students' Problem-Solving Skills In Work And Energy Based On Gender, Miftahuljannah Muslimin

Jurnal Pendidikan Sains

This study analyzes students’ problem-solving skills on Work and Energy using a quantitative descriptive design, profiling performance across five indicators without causal claims. Participants were 85 students from SMA Negeri 1 Barru, South Sulawesi (30 males, 55 females) who answered five essay items scored on useful description, physics approach, specific application, mathematical procedure, and logical progression. Overall means were 57.73 (females) and 60.73 (males); an independent t-test showed p = .333 > .05 with Cohen’s d = 0.22 (small), indicating no meaningful overall difference. By indicator, ANOVA showed no gender differences (α > .05) except for logical progression (p = .029). …

Empowering Youth In A Changing Climate: Design, Implementation, And Evaluation Of A Salt Marsh Summer Science Program, Dan Levesque

Graduate Masters Theses

Climate change presents not only environmental challenges but also emotional challenges for today’s youth. This thesis documents the design, implementation, and evaluation of a field-based summer science program aimed at empowering adolescents with coastal salt marsh ecology while addressing climate change emotions and science identity development. The program, based in a Massachusetts salt marsh, was adapted from existing public environmental curricula and guided by place- and experience-based learning principles. Over Spring and Summer 2025, 13 students (ages 13-18) participated in extra-curricular field trips, hands-on research activities, and reflective discussions about the environment and the emotions it brings forth. Pre- and …