Digital Commons Network^™

Neurosymbolic Counterpoint Generation, Paul D. Jarski

Master's Theses

Recent advancements in generative artificial intelligence have revolutionized music generation, yet research has predominantly focused on raw audio synthesis over music in symbolic form, i.e. a score. This thesis presents the first neurosymbolic model designed to generate imitative Renaissance counterpoint in symbolic (MIDI) format. By leveraging an autoregressive Transformer architecture, this research explores the capacity of deep learning models to manage independent voices and strict stylistic constraints.

We compare multiple data representation strategies with distinct tokenization methods. The proposed model incorporates a symbolic component that enforces fundamental contrapuntal rules. Additionally, this thesis contributes a preprocessed dataset of Renaissance polyphony, in …

Argument-Based Consistency In Toxicity Explanations Of Llms, Ramaravind K. Mothilal, Joanna Roy, Syed Ishtiaque Ahmed, Shion Guha

Health Services and Informatics Research

The discourse around toxicity and LLMs in NLP largely revolves around detection tasks. This work shifts the focus to evaluating LLMs’ reasoning about toxicity—from their explanations that justify a stance—to enhance their trustworthiness in downstream tasks. Despite extensive research on explainability, it is not straightforward to adopt existing methods to evaluate free-form toxicity explanation due to their over-reliance on input text perturbations, among other challenges. To account for these, we propose a novel, theoretically-grounded multi-dimensional criterion, Argument-based Consistency (ArC), that measures the extent to which LLMs’ free-form toxicity explanations reflect an ideal and logical argumentation process. Based on uncertainty quantification, …

College Of Natural Sciences 2025 Year-End Publication, College Of Natural Sciences

College of Natural Sciences Newsletters and Reports

Page 2 Dean's Message 
Page 3 Department Highlights 
Page 4 One Day for State 
Page 5 Ice cores reveal volcanic eruptions in 13th century 
Page 5 How do our cells interpret stress 
Page 6-7 Faculty Excellence
Page 8 New chemical biology consortium will accelerate cancer research
Page 9 SDSU to combat crop disease, biofilms in new NSF-back project 
Page 9 Science as Art Competition 
Page 10-11 Student Excellence  
Page 12 SDSU researcher developing natural alternative to synthetic dyes
Page 12 Browning Retired
Page 13 Quantum technologies through NSF-backed project
Page 13 NASA Funds CNS Development of Model
Page 14 GGS …

Intramolecular Nonbonding Interactions And Geared Phenyl Twisting In Para-Disubstituted 1,4-Diphenylazines: Electron Correlation Effects On Molecular Conformations And Enantiomerization, Kaidi Yang, Harmeet Bhoday, Rainer Glaser

Chemistry Faculty Research & Creative Works

The results are reported of potential energy surface (PES) analyses of six symmetrical azines Y_p − Ph − RC=N − N=CR − Ph − Y_p, namely, the benzaldehyde azines 1H, 2H, and 8H with R = H and the acetophenone azines 1M, 2M, and 8M with R = Me. The Y substituents Cl (1), Br (2), and Me (8) were studied because sets of polymorphs I (C2-symmetry, azine twist τ ≈ 135 ± 10°, disrotatory phenyl twists ϕi ≠ 0°) and II (Ci-symmetry, τ = 180°, conrotatory ϕi ≠ 0°) were crystallized for these three azines. The …

A Mineralogical And Geochemical Characterization Of The Amo Meteorite, Karinn Johnson '27, Kenneth Brown, Chad Byers, Thomas Grier

Annual Student Research Poster Session

Meteorites provide a wealth of information about solar system evolution, planetary formation and differentiation, and provide clues to the origins of water and life on Earth. On December 10th, 2024 (4:04 EST), a meteor fall was observed approximately 50 km west of Indianapolis, over the small town of Amo, Indiana (Hendricks County). Several pieces of the meteor ranging from about 1g to >60kg were recovered. A local Greencastle, IN resident collected a 1451.3g sample, of which a 7.5g piece was donated to DePauw University for detailed textural, mineralogical, and geochemical characterization using stereomicroscopy, scanning electron microscopy (SEM), energy-dispersive spectroscopy (EDS), …

Pointwise Self-Homeomorphic Generalized Inverse Limits, Ali H. Ali, Faruq A. Mena, Robert Paul Roe

Mathematics and Statistics Faculty Research & Creative Works

In this paper, we find uncountable families of generalized inverse sequences on intervals, where the bonding functions consist of a finite number of line segments, such that the inverse limit spaces of these sequences are pointwise self-homeomorphic continua. We give several examples of pointwise self-homeomorphic continua obtained in this manner including the dendrite D3 and a dendrite containing Dω. The dendrite D3 was obtained previously, by others, as a generalized inverse limit but the bonding function in that example contained infinitely many line segments. We show that the techniques we use on intervals can be extended to inverse limits where …

An Odd Protocol For An Agent-Based Model Of Hepatitis C Virus Transmission In A Two-Group Structural Heterogeneous Syringe-Sharing Network (M2), Seun Ale, Que Nguyen Dr., John D. Kelleher Prof., Elizabeth Hunter Dr.

Reports

The model described in this ODD is an agent-based model of hepatitis C virus (HCV) transmission among people who inject drugs (PWID). The model extended a baseline homogeneous model by incorporating structural heterogeneity via a two-group interaction framework. The syringe-sharing population in the model is divided into inner and outer circle groups representing individuals with differing levels of syringe-sharing interaction intensity. While all agents share the same syringe-sharing probability and epidemiological processes remain identical across agents, the number of daily interaction opportunities differs between the two groups. Interactions in the model are generated dynamically using proximity-based sampling at each timestep …

An Odd Protocol For An Agent-Based Model Of Hepatitis C Virus Transmission In A Three-Group Structural Heterogeneous Syringe-Sharing Network (M3), Seun Ale, Que Nguyen Dr., John D. Kelleher Prof., Elizabeth Hunter Dr.

Reports

The model described in this ODD is an agent-based model of hepatitis C virus (HCV) transmission among people who inject drugs (PWID). The model incorporates structural heterogeneity through a three-group interaction framework. The syringe-sharing population in the model is divided into core, inner, and outer circle groups representing individuals with high, moderate, and low levels of syringe-sharing interaction intensity, respectively. While the syringe-sharing rate and all epidemiological processes remain identical across agents, the number of daily interaction opportunities differs by agent grouping, capturing variation in structural position within the syringe-sharing network. Interactions are generated dynamically using proximity-based sampling at each …

An Odd Protocol For An Agent-Based Model Of Hepatitis C Virus Transmission With Inter-Group Structural And Behavioural Heterogeneous Syringe-Sharing Networks (M4), Seun Ale, Que Nguyen Dr., John D. Kelleher Prof., Elizabeth Hunter Dr.

Reports

The model described in this ODD is an agent-based model of hepatitis C virus (HCV) transmission among people who inject drugs (PWID). The model incorporates structural heterogeneity through a three-group interaction framework and behavioural heterogeneity through group-specific syringe-sharing rates. The syringe-sharing population in the model is divided into core, inner, and outer circle groups representing individuals with high, moderate, and low levels of syringe-sharing interaction intensity, respectively. In addition to differences in the number of daily interaction opportunities across groups, agents in each group are assigned distinct syringe-sharing probabilities, reflecting variation in risk-taking behaviour across structural groups within the syringe-sharing …

The Illusion Of Causality In Llms: A Developmentally Grounded Analysis Of Semantic Scaffolding And Benchmark–Capability Mismatches, Daisuke Akiba

Publications and Research

Recent benchmarks increasingly report that large language models (LLMs) exhibit human-like causal reasoning abilities, including counterfactual inference and intervention planning. However, many such evaluations rely on domains that are heavily represented in training data and embed strong semantic cues, raising the possibility that apparent causal competence may reflect semantic pattern recombination rather than structure-sensitive causal reasoning. Drawing on human developmental theories of causal induction, this perspective argues that genuine causal understanding requires robustness to novelty and reliance on conditional structure rather than semantic familiarity. To illustrate the testability of this claim, the paper includes a pilot demonstration using synthetic causal …

Selecting Without Replacement From A Population Of Bands Of Serially Connected Objects, James E. Marengo, Dominick Banasik, Joseph Voelkel, David L. Farnsworth

Articles

The sampling procedure from a finite population of objects that are serially attached into bands is described and analyzed. One object is randomly selected and removed at a time, which results in that object’s band being broken into two bands or shortened by one object. The main result gives the probability of choosing an object that is part of a band of serially connected objects of any specified size at each stage of the selection process.

Complex Spin Structure In Co-Trimer-Chain Li2Co3Se4O12, Jie Xing, Feng Ye, Daniel Duong, Sai Mu, Max T. Pan, Rongying Jin

Faculty Publications

Complex magnetic materials are extremely attractive for revealing unconventional spin states and novel magnetic excitations. Here, we report the structural, thermodynamic, and magnetic properties of a novel magnetic material Li₂Co₃Se₄O₁₂based on x-ray and neutron diffraction, specific heat, magnetization, and x-ray photoelectron spectroscopy measurements. X-ray and neutron diffraction refinements reveal two Co sites Co (1) and Co (2) even though both are in the octahedral environment. While they are not connected along the b and c directions, these octahedra are edge-shared forming the Co (2) – Co (1) – Co (2) trimer chain …

Ecology And Life History Of Baleen Whales Inform Climate Change Vulnerabilities And Priorities For Future Monitoring, Lesley H. Thorne, Erin L. Meyer-Gutbrod

Faculty Publications

Baleen whales are key consumers in marine habitats that serve as vectors of nutrients, but their populations have been slow to recover from past commercial whaling due to their low reproductive rates and ongoing anthropogenic threats. Climate impacts have become central to the demography and habitat use of baleen whales, and conservation efforts must account for these impacts to be effective. However, knowledge of baleen whale climate responses is lacking, and current survey effort is insufficient to capture changes in migration and habitat use for many species. Due to their unique combination of ecological and life history characteristics, baleen whales …

Deep Learning Approaches For Anti-Money Laundering On Mobile Transactions: Review, Framework, And Directions, Jiani Fan, Lwin Khin Shar, Ruichen Zhang, Ziyao Liu, Wenzhuo Yang, Dusit Niyato, Kwok-Yan Lam

Research Collection School Of Computing and Information Systems

Money laundering is a financial crime that obscures the origin of illicit funds, necessitating the development and enforcement of anti-money laundering (AML) policies by governments and organizations. The proliferation of mobile payment platforms and smart IoT devices has significantly complicated AML investigations. As payment networks become more interconnected, there is an increasing need for efficient real-time detection to process large volumes of transaction data on heterogeneous payment systems by different operators such as digital currencies, cryptocurrencies, and account-based payments. Most of these mobile payment networks are supported by connected devices, many of which are considered loT devices in the FinTech …

Comprehensively Evaluating The Perception Systems Of Autonomous Vehicles Against Hazards, Xiaodong Zhang, Jie Bao, Jianlei Chi, Jun Sun, Zijiang Yang

Research Collection School Of Computing and Information Systems

Perception systems are vital for the safety of autonomous driving. In complex autonomous driving scenarios, autonomous vehicles must overcome various natural hazards, such as heavy rain or raindrops on the camera lens. Therefore, it is essential to conduct comprehensive testing of the perception systems in autonomous vehicles against these hazards, as demanded by the regulatory agencies of many countries for human drivers. Since there are many hazard scenarios, each of which has multiple configurable parameters, the challenges are (1) how do we systematically and adequately test an autonomous vehicle against these hazard scenarios, with measurable outcome; and (2) how do …

Microstructural Evolution Of Zirconium Diboride Irradiated With 5–10 Mev Au Ions At Room Temperature And 570 °C, Narrie Loftus, José Olivares, Miguel Crespillo, Esther Enríquez Pérez, Jeremy Watts, Eric W. Bohannan, Gregory Hilmas, William Fahrenholtz, Joseph Graham

Materials Science and Engineering Faculty Research & Creative Works

Zirconium diboride was irradiated with 5 MeV Au^2 + , 7 MeV Au⁴⁺ and 10 MeV Au³⁺ ions at room temperature and 570 °C to doses from 1 to 8 displacements per atom (dpa). Grazing incidence X-ray diffraction (GIXRD) analysis revealed no secondary phase formation. Rietveld analysis of the GIXRD data indicated an accumulation of microstrain at low dpa and room temperature. Dislocations observed in transmission electron microscopy (TEM) cross-sections are likely the main contributor to the microstrain. High dpa and high-temperature samples exhibit lower lattice distortion than lower dpa samples, suggesting the presence of enhanced defect …

A Cryptographic Perspective On The Verifiability Of Quantum Advantage, Nai-Hui Chia, Honghao Fu, Fang Song, Penghui Yao

Computer Science Faculty Publications and Presentations

In recent years, achieving verifiable quantum advantage on a NISQ device has emerged as an important open problem in quantum information. The sampling-based quantum advantages are not known to have efficient verification methods. This article investigates the verification of quantum advantage from a cryptographic perspective. We establish a strong connection between the verifiability of quantum advantage and cryptographic and complexity primitives, including efficiently samplable, statistically far but computationally indistinguishable pairs of (mixed) quantum states (EFI), pseudorandom states (PRS), and variants of minimum circuit size problems (MCSP). Specifically, we prove that a) a sampling-based quantum advantage is either verifiable or can …

X-Ray Emission In Illustristng Circum-Cluster Environments: Ii. Possible Origins Of The Soft X-Ray Excess Emission, Celine Gouin, Daniela Galárraga-Espinosa, Massimiliano Bonamente, Stephen Walker, Mohammad Mirakhor, Richard Lieu, Clotilde Laigle, Etienne Bonnassieux, Charlotte Welker, Stefano Gallo, Tony Bonnaire, Jade Paste

Publications and Research

Context. An excess of soft X–ray emission (∼0.2 − 1 keV) above the contribution from the hot intracluster medium (ICM) has been detected in a number of galaxy clusters, including the Coma cluster. The physical origin of this emitting medium above the hot ICM has not yet been determined, in particular, it is unclear whether it is thermal or nonthermal.

Aims. We investigate the gas phase and gas structure that reproduce the soft excess radiation from the cluster core to the outskirts best using simulations.

Method. By using the IllustrisTNG simulation (TNG300), we predict the radial profile of thermodynamic properties …

Interpretable Machine Learning For Personalized Profiling Of Mild Cognitive Impairment From Daily Activities, Budhitama Subagdja, Ah-Hwee Tan, Kenneth Kwok, Iris Rawtaer

Research Collection School Of Computing and Information Systems

Continuous monitoring of individual daily activities is essential to detect mild cognitive impairment (MCI) wherein timely intervention can still be applied to prevent more severe mental decline. Recent approaches in predicting MCI are mostly considering digital biomarkers across individuals but often neglecting specific indicators from a single person over a long period of time. Making this personalized, dynamic, and highly noisy prediction model with irregular distribution of missing information to be explainable and actionable for clinical use, remains a challenge. This paper presents a study on a personalized MCI prediction and profiling from an in-home and mobile cognitive health monitoring …

Cylindformer: Image-To-Point Cloud Registration With Cylindrical Transformer, Jingtao Wang, Hao Tang, Yanpeng Sun, Shengfeng He, Zechao Li

Research Collection School Of Computing and Information Systems

Accurate correspondence extraction between distinctive pixel-wise and point-wise features is critical for image-to-point cloud (I2P) registration. Recent efforts leveraging Transformers for I2P feature representation have demonstrated potential, primarily by first capturing intra-modality global contextual dependencies via self-attention, and then learning cross-modality correlations via cross-attention. The strength of vanilla Transformers lies in modeling cross-modality global feature correlations. However, such mechanisms often struggle with the structural disparity between dense image pixels and sparse 3D points, hindering the establishment of fine-grained correspondences. Moreover, global attention may introduce ambiguity, as interactions with many inconsistent regions of intra-modality may degrade feature distinctiveness. To address these …

Private Set Intersection: A Systematic Review, Yunbo Yang, Defan Zhu, Jianting Ning, Qi Feng, Xiaoguo Li, Yuejia Cheng, Guomin Yang, Kui Ren

Research Collection School Of Computing and Information Systems

Various services, such as search engines, are increasingly deployed in cloud-based and distributed systems. However, data are typically managed by trusted servers, making user privacy and data security critical concerns. Private set intersection (PSI) is a powerful cryptographic primitive that enables multiple parties to compute the intersection of their datasets without revealing private inputs. It has been extensively studied over the past two decades, leading to significant gains in computational and communication efficiency. Yet, in many real-world scenarios, revealing the raw intersection may still leak sensitive information. To address this, numerous PSI variants have been developed to meet different application …

Improving Public Transport Through Machine Learning Influence Flow Analysis (Mifa): Southern England Bus Case Study, Benjamin Lee, Wolfgang Garn, Masoud Fakhimi, Nick F. Ryman-Tubb

Research Collection School Of Accountancy

Public transport (PT) is crucial for enhancing the quality of life and enabling sustainable urban development. As part of the UK Transport Investment Strategy, increasing PT usage is critical to achieving efficient and sustainable mobility. This paper introduces Machine Learning Influence Flow Analysis (MIFA), a novel framework for identifying the key influencers of PT usage. Using survey data from bus passengers in Southern England, we evaluate machine learning models. Subsequently, MIFA uncovers that easy payments, e-ticketing, and mobile applications can substantially improve the PT service. MIFA’s implementation demonstrates that strength and importance lead to specific insights into how service characteristics …

Evaluating Carbon Risk And Benefit Under Improved Forest Management Prescriptions In A California Mixed Conifer Stand, Jonathan A. Garcia

Master's Theses

Improved forest management (IFM) prioritizes carbon accumulation through practices such as extended rotations and retention harvesting. These management strategies, increase fuel loads and elevate the potential fire intensity, may offset the benefits of carbon sequestration. Additionally, IFMs use spatially complex silvicultural treatments that may introduce prediction errors into the simulation processes used for long-term projections, and carbon accounting.

We evaluated the extent to which calibration in the Forest Vegetation Simulator (FVS) reduces error in aboveground carbon stock predictions and tested whether modeling approaches and calibration influence the magnitude and direction of basal area increment (BAI) prediction error using generalized mixed-effects …

In What Style Shall I Confront Them? The Role Of Social Relationships In Social Correction Of Misinformation Among The Uk And Arab Social Media Users, Muaadh Noman, Mohamed B. Almourad, Ala Yankouskaya, Firoj Alam, Raian Ali

All Works

This study investigates how social factors influence the likelihood of employing direct or indirect communication styles when correcting misinformation on social media in two different cultural contexts, the United Kingdom (UK) and the Arab Gulf Cooperation Council (GCC) countries. We conducted an online survey, supported by vignettes, that involved 686 participants, 367 from the UK and 319 from the Arab GCC countries. Participants were presented with a misinformation scenario and asked about their likelihood of using direct or indirect communication styles to correct their acquaintances. The survey captured variations in gender similarity (same vs. different gender), social status (lower vs. …

Navigating Ethical Considerations And Implications Of Ai Chatbots In Higher Education: A Systematic Review, Ons Al-Shamaileh, Ramy Hammady, Mahmoud Abdelrahman, Omar Mubin

All Works

This systematic review explores the ethical challenges associated with the use of AI-based chatbots in higher education, focusing on their implications for students, educators, institutions, and administrative stakeholders. Following PRISMA guidelines, peer-reviewed literature published between 2014 and 2024 was systematically identified across eight major academic databases, yielding a total of 109 eligible studies. A thematic analysis of the included literature indicates that concerns related to academic integrity are most frequently discussed, alongside recurring issues involving data privacy and security, algorithmic bias, overreliance on automated systems, and the risk of inaccurate or misleading outputs. The findings further demonstrate considerable variation in …

Law Library Blog (March 2026): Legal Beagle's Blog Archive, Roger Williams University School Of Law

Law Library Newsletters/Blog

No abstract provided.

Transfer Learning Neural Networks For Nuclear Forensic Image Morphology Using Image Splitting Techniques, Niko A. Petrocelli, Lee C. Lambert, Brett J. Borghetti, Abigail A. Bickley

Faculty Publications

Manual morphological analysis of actinide particles from scanning electron microscope (SEM) imagery is a critical component of nuclear forensics but is prone to significant inter-analyst variability. To address this challenge, this work develops and evaluates an automated classification method using deep learning. We introduce a methodology based on partitioning 1906 SEM images, representing 13 classes of uranium compounds, into smaller patches for analysis. Three convolutional neural network (CNN) architectures of increasing complexity were compared: a custom baseline CNN, a simple transfer learning model using ResNet50v1, and a complex model featuring hierarchical feature extraction and a spatial attention mechanism built upon …

Dynamic Magnetic Null Behavior In Planar Ion Diodes: Particle-In-Cell Analysis Of Field Oscillations And Ion Beam Dynamics, Jesse C. Foster, Stephen B. Swanekamp, Paul F. Ottinger

Faculty Publications

Particle-in-cell simulations of a 1.75 MV, 375 kA, and 50 ns planar pinched-beam diode reveal that the strongest gigahertz-frequency oscillations in electric field and ion current arise from the dynamic motion of the magnetic null near the anode tip. These oscillations, which appear when the ion transit time becomes comparable to the local field-variation timescale, periodically expand the effective anode–cathode gap and generate bursts of over-accelerated ions. The resulting ion energy spectrum broadens substantially near the null while maintaining excellent beam uniformity along the anode. The simulations, therefore, demonstrate a direct physical linkage between ion transit time instability and magnetic …

Interactions Between Air Pollution And Weather/Climate From Urban To Global Scales, Meng Gao, Xin Huang, Yucong Miao, Mengmeng Li, Claudio Mazzoleni

Michigan Tech Publications

Air pollution and meteorology are intricately linked. Weather modulates the formation, transport, and removal of pollutants, while aerosols and trace gases modify radiation balance, cloud microphysics, boundary-layer structure, and other factors. These two-way interactions span scales from urban to global and have important consequences. The papers collected in this special issue of Meteorological Applications examine how interactions between weather and pollution at various scales affect visibility, pollutant transport, crop yields, and other outcomes, collectively highlighting the crucial role of the interplay between air pollution and meteorology.

Stard-Net: Spatiotemporal Attention For Robust Detection Of Tiny Airborne Objects From Moving Drones, Hasibur Rahman, Sanjay Kumar Madria

Computer Science Faculty Research & Creative Works

The rapid adoption of drones across various domains, alongside advancements in computer vision, has driven growing interest in vision-based airborne object detection from moving aerial platforms. However, this task remains challenging due to the small scale of objects, camouflage within cluttered backgrounds, and occlusions. To address these challenges, we introduce an end-to-end detection framework that integrates a Drone Receptive Field Block (DRFB) to extract multiscale and geometrically diverse features, specifically designed to enhance the detection of small and camouflaged airborne objects. To model motion patterns over time while preserving spatial structure, particularly for detecting camouflaged, cluttered and occluded objects with …