Digital Commons Network^™

Numerical Issues For A Non-Autonomous Logistic Model, Marina Mancuso, Kaitlyn M. Martinez, Carrie Manore, Fabio Milner

CODEE Journal

The user-friendly aspects of standardized, built-in numerical solvers in
computational software aid in the simulations of many problems solved using
differential equations. The tendency to trust output from built-in numerical
solvers may stem from their ease-of-use or the user’s unfamiliarity with the
inner workings of the numerical methods. Here, we show a case where the
most frequently used and trusted built-in numerical methods in Python’s
SciPy library produce incorrect, inconsistent, and even unstable approxima-
tions for a the non-autonomous logistic equation, which is used to model
biological phenomena across a variety of disciplines. Some of the most com-
monly used …

Successful Management Of Chromoblastomycosis Utilizing Conventional Antifungal Agents And Imiquimod Therapy, Jinjin Zheng, Shougang Liu, Zhenmou Xie, Yangxia Chen, Liyan Xi, Hongfang Liu, Yinghui Liu

Faculty, Staff and Student Publications

Chromoblastomycosis (CBM), a chronic fungal infection affecting the skin and subcutaneous tissues, is predominantly caused by dematiaceous fungi in tropical and subtropical areas. Characteristically, CBM presents as plaques and nodules, often leading to scarring post-healing. Besides traditional diagnostic methods such as fungal microscopy, culture, and histopathology, dermatoscopy and reflectance confocal microscopy can aid in diagnosis. The treatment of CBM is an extended and protracted process. Imiquimod, acting as an immune response modifier, boosts the host's immune response against CBM, and controls scar hyperplasia, thereby reducing the treatment duration. We present a case of CBM in Guangdong with characteristic reflectance confocal …

Technological Challenges And Development Directions Of Ecological Security Barrier Construction In Yun-Gui-Chuan-Yu Region, Peng Cui, Yongping Yang, Genxu Wang, Bo Zhu, Xuyang Lu, Geng Sun, Xiaoyong Bai, Sirui Zhang, Yonggang Ge, Jiao Wang

Bulletin of Chinese Academy of Sciences (Chinese Version)

The Yun-Gui-Chuan-Yu Ecological Security Barrier is situated in Southwest China, encompassing the provinces of Sichuan, Chongqing, Guizhou, and Yunnan. It serves as a vital water source conservation area and a core zone for biodiversity protection for the Yangtze, Yellow, and Pearl River basins, playing a crucial role in China’s national ecological security. Since the 18th National Congress of Communist Party of China, under the guidance of Xi Jinping’s Thought on Ecological Civilization, the region has made significant strides in water resource protection, soil erosion and mountain disaster control, biodiversity conservation, and ecosystem restoration, resulting in noticeable improvements in environmental quality …

Biodiversity Conservation In Western China With Scientific And Technological Support: Current Status, Challenges, And Suggestions, Fuwen Wei, Hang Sun, Jiaojun Zhu, Baoguo Li, Gexia Qiao, Shilong Chen, Jiang Zhu, Xiaoge Ping

Bulletin of Chinese Academy of Sciences (Chinese Version)

As a megadiverse country, China has made significant progress in biodiversity conservation in recent years. The western region is a critical area for biodiversity conservation in China, boasting rich species resources and a high proportion of endemic species. However, its ecosystems are fragile and vulnerable to the impacts of multiple factors like climate change and human activities. Scientific and technological support has played a vital supporting role in biodiversity conservation, providing comprehensive support from monitoring and assessment to restoration and decision-making through biodiversity surveys, scientific research, and the establishment of monitoring networks. Nevertheless, challenges remain, including gaps in taxa and …

Towards 5th World Congress Of Biosphere Reserves: Opportunities And Recommended Actions For China, Yijie Xian, Qiang Fang, Ning Liu, Xiangjun Chen, Yan Zhuang, Ding Wang, Qunli Han

Bulletin of Chinese Academy of Sciences (Chinese Version)

The holding of important international conferences in science and technology can generally bring multiple benefits for the host countries, such as developing strategy in the area of international cooperation. One example comes from the 5th World Congress of Biosphere Reserves due to be held in Hangzhou, China from September 22–27, 2025. This study summarizes the history of previous congresses and the system of Man and the Biosphere Programme (MAB) in which the congresses are located. Significance of the 5th Congress can be found as increasing the global engagement and international influence of MAB, and advancing the achievement of the United …

Enhancing Integrated Observation Network Of Multi-Spherical Interaction In Zoige Wetland And Source Area Of Yellow River Supports Protection Of Yellow River Water Tower, Xianhong Meng, Lunyu Shang, Zhaoguo Li, Shaoying Wang, Lele Shu, Hao Chen, Lin Zhao, Peixi Su, Yu Zhang, Shihua Lyu

Bulletin of Chinese Academy of Sciences (Chinese Version)

An integrated observation network for the energy-water-carbon cycle, with the Zoige wetland and grassland as the focus and covering the source area of the Yellow River (YRSR), has been established, which systematically revealed the characteristics of ecosystem evolution and carbon cycle in grassland and wetland ecosystems of the Zoige Plateau from the leaf-community-ecosystem-regional scales and its response mechanism to climate change, and accordingly, the ecological monitoring and restoration techniques for different types of degraded grassland based on the degradation of the alpine grass mattic epipedon were established, which significantly reduced the cost and enhanced the sustainability of the ecological management. …

The Osteological Neutral Pose Of The Neck Of An Apatosaurine Sauropod Based On Virtual And Physical Models, Colin Don Boisvert

Theses and Dissertations

An array of sauropod taxa coexisted in Late Jurassic North America. How so many giant genera coexisted without competing for food is puzzling considering their potential metabolic requirements. One aspect of this question is neck posture, which has been much contested, both in terms of the intrinsic curvature of the neck and the resultant elevation of the head. Neck curvature is characterized by the Osteological Neutral Pose (ONP), wherein the intervertebral joints are in an undeflected state. This pose is crucial to understanding neck posture. The articulated series of presacral vertebrae 2-19 of an exceptionally well-preserved apatosaurine, BYU 18531, are …

An Analysis Of (Hu)Manid Using The Usf Donated Skeletal Collection: Estimating Sex And Ancestry For Edentulous Individuals, Natalie S. Wise

USF Tampa Graduate Theses and Dissertations

The Human Mandible Identification program, (hu)MANid©, enables anthropologists to estimate the sex and ancestry of unidentified skeletal remains from metric and morphoscopic variables from the mandible. The program is suitable for a variety of anthropological contexts, including forensic casework and bioarchaeological or paleoanthropological analyses. The purpose of this research project is to test the accuracy and applicability of the (hu)MANid program on edentulous mandibles. While the authors of (hu)MANid warn against data collection for edentulous mandibles, there are many circumstances in applied forensic casework where the unidentified person is edentulous. Edentulous individuals experience alveolar resorption, which is the loss of …

Making Proteomics Accessible: Rokaixplorer For Interactive Analysis Of Phospho-Proteomic Data, Serhan Yılmaz, Filipa Blasco Tavares Pereira Lopes, Daniela Schlatzer, Marzieh Ayati, Mark R. Chance, Mehmet Koyutürk

Computer Science Faculty Publications

We present RokaiXplorer, an intuitive web tool designed to address the scarcity of user-friendly solutions for proteomics and phospho-proteomics data analysis and visualization. RokaiXplorer streamlines data processing, analysis, and visualization through an interactive online interface, making it accessible to researchers without specialized training in proteomics or data science. With its comprehensive suite of modules, RokaiXplorer facilitates phospho-proteomic analysis at the level of phosphosites, proteins, kinases, biological processes, and pathways. The tool offers functionalities such as data normalization, statistical testing, activity inference, pathway enrichment, subgroup analysis, automated report generation, and multiple visualizations, including volcano plots, bar plots, heat maps, and network …

Evaluation Of An Autonomous Acoustic Surveying Technique For Grassland Bird Communities In Nebraska, Grace E. Schuster, Leroy J. Walston, Andrew R. Little

School of Natural Resources: Faculty Publications

Monitoring trends in wildlife communities is integral to making informed land management decisions and applying conservation strategies. Birds inhabit most niches in every environment and because of this they are widely accepted as an indicator species for environmental health. Traditionally, point counts are the common method to survey bird populations, however, passive acoustic monitoring approaches using autonomous recording units have been shown to be cost-effective alternatives to point count surveys. Advancements in automatic acoustic classification technologies, such as BirdNET, can aid in these efforts by quickly processing large volumes of acoustic recordings to identify bird species. While the utility of …

Effects Of Differing Radiation Methods On Charge Transport In Polymers, Zachary Gibson, Jr Dennison, Virginie Griseri

Presentations

The mitigation of deleterious arcing and sparking onboard spacecraft depends upon a thorough understanding of the electrical properties of the materials involved. This includes not only understanding steady-state parameters such as dark conductivity, but responses to the space environment as well. For example, radiation-induced conductivity drastically changes the conductivity of a material due to the presence of radiation. However, this change in conductivity diminishes away once the radiation is no longer present. There may also be permanent changes, or aging, in the material properties. The physical processes of aging can be complicated and are often difficult to model. Therefore, empirical …

Synthetic Assembly Of Antibacterial Agents And Metal Chelating Ligands, Zachary Joseph Liveris

Dissertations

The exploitation of chemical synthesis exemplifies the notion of bridging both innovation and curiosity for the strategic assembly of sophisticated molecular infrastructures. By exerting this continuously evolving and versatile tool, synthesis has been applied in the development and influence of a myriad of ligands, biological probes, and persists to direct pharmaceutical innovation and modern medicine alike. Since pathogenic multidrug-resistant (MDR) microbial strains remain to be a persistent threat to both clinical healthcare and society, the need to develop selective and efficacious antibacterial agents that can impede microbe pathogenicity and regulate cellular mortality is paramount. In contrast to pharmaceutical development, organic …

Butte Priority Soils Operable Unit (Bpsou) Draft Final Insufficiently Reclaimed Sites Field Sampling Plan (Fsp) Bres No. 181 – Mountain Con-3 Dump, Mike Mcanulty

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Impacts Of Stream Habitat Restoration On Macroinvertebrate Assemblages: A Systematic Literature Review, Morgan E. Seitzer

University Honors Theses

Globally, river restoration has become a popular tool for improving the health of a watershed and restoring ecosystem services, but still has significant knowledge gaps. In certain areas and scientific communities, special attention has been given to the response of macroinvertebrates as a measure of restoration success. This systematic literature review aims to highlight and discuss the patterns in studies that have comparable before-and-after restoration data on macroinvertebrates after reconnecting stream channels to their floodplains. Macroinvertebrate sampling is a simple if not time-consuming task that can reveal important data about habitat quality. Because they serve as an important food source …

Assessing The Climate Resilience Of Quercus Garryana In The Portland Metro Region, Jess Rose Nettle Shamek

Dissertations and Theses

In the context of rapid global climate change, understanding the resilience of local tree species is essential for fostering effective environmental stewardship and community hopefulness. Oregon white oak (Quercus garryana), an emblematic species in the Pacific Northwest, has faced significant habitat loss and degradation since settler colonization. However, it also exhibits a predicted resilience to climate change, potentially leading to a range shift and expansion. Species resilience refers to the capacity of a species to persist and adapt in the face of rapid global climate change. Beyond vulnerability assessments and niche models, we know little about this species' …

Thz Radar Observations Of Hydrometeors In A Spray Chamber, Zeen Zhu, Fan Yang, Edward Luke, Elise Rosky, Katia Lamer, Pavlos Kollias

Michigan Tech Publications

A THz radar, with its wide bandwidth, is capable of high-resolution imaging down to the centimeter scale. In this study, a THz radar is applied to detect hydrometeors generated in a spray chamber. The observed backscattering signals show fluctuations at centimeter scales, indicating various hydrometeor distribution patterns along the radar beam. A co-located High-Speed Imaging (HSI) sensor is used to measure the Drop Size Distributions (DSD) in the spray chamber. The radar sampling beam is well aligned with the HSI probes, allowing an objective comparison between the remote sensing and in situ observations. In this study, the observed radar power …

Hardware Acceleration Of Numerical Methods For Solving Ordinary Differential Equations, Soham Bhattacharya

Theses and Dissertations

Along with the advancement in technology, the role of hardware accelerators is increasing consistently, delivering advancements in scientific simulations and data analysis in scientific computing, signal processing tasks in communication systems, matrix operations, and neural network computations in artificial intelligence and machine learning models. On the other hand, several high-speed computer applications in this era of high-performance computing often depend on ordinary differential equations (ODEs); however, their nonlinear nature can present a challenge to obtaining analytic solutions. Consequently, numerical approaches prove effective in delivering only approximate solutions to these equations. This research discusses the implementation of a customized hardware accelerator …

A Country-Level Primary-Final-Useful (Cl-Pfu) Energy And Exergy Database: Overview Of Its Construction And 1971–2020 World-Level Efficiency Results, Paul E. Brockway, Matthew Kuperus Heun, Zeke Marshall, Emmanuel Aramendia, Paul Steenwyk, Thomas Relph, Michelle Widjanarko, Jeonghoo (James) Kim, Anjana Sainju, Julian Irtube

University Faculty Publications and Creative Works

Societal exergy analysis examines the flows of energy and exergy through societies, from primary (e.g. oil) to final (e.g. gasoline) to useful (e.g. propulsion) energy stages. By extending the study of energy to the useful stage, new insights into the under-represented role of energy in economic growth have been made. However, currently (a) country coverage is patchy and incomplete, (b) available data are based on varying methods and assumptions including efficiencies based on economic rather than engineering data, and (c) datasets are constructed using piecemeal computational approaches. To address these gaps, we construct a country-level primary-final-useful (CL-PFU) energy and exergy …

Proceedings Of The Cuny Games Conference 10.0, Robert O. Duncan, Grace Axler-Diperte, Joe Bisz, Christina Boyle, Devorah Kletenik, Carolyn Stallard

Publications and Research

The ten-year anniversary (!) of the CUNY Games Conference combines workshops, idea exchanges, interactive participant presentations, playtesting, and playing tabletop games into a two-day hybrid event to promote and discuss game-based learning. The conference focuses on creative pedagogy, such as playful learning activities or games, that teachers can use in the classroom every day. Day 1 featured interactive presentations by attendees, informal idea exchange sessions, and workshops by the conference organizers. Day 2 featured select presentations and workshops, poster sessions, playtesting and game modding, and casual play of tabletop games.

The Ecosystem As Super-Organ/Ism, Revisited: Scaling Hydraulics To Forests Under Climate Change, Jeffrey D. Wood, Matteo Detto, Marvin Browne, Nathan J.B. Kraft, Alexandra G. Konings, Joshua B. Fisher, Gregory R. Quetin, Anna T. Trugman, Troy S. Magney, Camila D. Medeiros, Nidhi Vinod, Thomas N. Buckley, Lawren Sack

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Classic debates in community ecology focused on the complexities of considering an ecosystem as a super-organ or organism. New consideration of such perspectives could clarify mechanisms underlying the dynamics of forest carbon dioxide (CO₂) uptake and water vapor loss, important for predicting and managing the future of Earth's ecosystems and climate system. Here, we provide a rubric for considering ecosystem traits as aggregated, systemic, or emergent, i.e., representing the ecosystem as an aggregate of its individuals, or as a metaphorical or literal super-organ or organism. We review recent approaches to scaling-up plant water relations (hydraulics) concepts developed for …

Examining The Interaction Between Calcium Supplement Use, Demographics, And Lifestyle Factors On Bone Health In Women, Vix Talbot

University Honors Theses

Osteoporosis is a condition which poses a significant health threat, particularly among women during the menopause transition, where accelerated bone loss increases fracture risk. Calcium supplementation has been shown to be an important intervention to mitigate bone mineral density (BMD) decline during this and other periods of life. However, the efficacy of calcium supplementation is influenced by various individual factors, including demographics and lifestyle habits. This study investigates the interaction between calcium supplement use, and several interaction terms on bone health in women. Multiple linear regression analysis is employed to assess the impact of these factors on BMD. Data from …

Microplastic Pollution In Stormwater: Preliminary Findings From The Oregon Coast, Jazmine Compton

University Honors Theses

Microplastics have become ubiquitous in marine environments and pose a risk to ecosystem, organismal, and human health. Stormwater runoff has been suggested to be a major contributor to marine microplastic pollution. This project aims to quantify the average concentration of microplastics in stormwater in a community on the Oregon Coast. To accomplish this, stormwater samples were collected from five sites in Cannon Beach, Oregon, and one sample was analyzed using a dissection microscope. Using this technique, the number, size, and composition of the microplastic particles were determined. The calculated concentration of microplastics in the stormwater sample was 12.21 MPs/L, and …

Mixed Uncertainty Analysis On Pumping By Peristaltic Hearts Using Dempster-Shafer Theory, Yanyan He, Nicholas A. Battista, Lindsay D. Waldrop

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

In this paper, we introduce the numerical strategy for mixed uncertainty propagation based on probability and Dempster–Shafer theories, and apply it to the computational model of peristalsis in a heart-pumping system. Specifically, the stochastic uncertainty in the system is represented with random variables while epistemic uncertainty is represented using non-probabilistic uncertain variables with belief functions. The mixed uncertainty is propagated through the system, resulting in the uncertainty in the chosen quantities of interest (QoI, such as flow volume, cost of transport and work). With the introduced numerical method, the uncertainty in the statistics of QoIs will be represented using belief …

Trust, Transparency, And Transport: The Impact Of Privacy Protection On The Acceptance Of Last-Mile Drone Delivery, Jurgen Heinz Famula

Electronic Theses and Dissertations

A common set of problems commercial delivery companies face is finding ways to increase the efficiency and reliability of the “last mile” of a package’s journey, all while reducing operating costs. This need for efficiency has driven many companies to explore using unmanned aerial vehicles (UAVs), or drones, to get packages to their final destination. Although UAVs have great potential to help increase efficiency in commercial package delivery, this comes at a potential cost to the privacy of people who intersect the flight paths of these unmanned vehicles. This thesis explores the effect of a mobile phone application for commercial …

Establishment Of A Research Site At The Kennedy Mountain Campus For The Observation Of Airborne Particulate Matter, Alyssa Knaus

Undergraduate Theses, Capstones, and Recitals

This thesis explored particulate matter (PM) concentrations at two sites within the Colorado Front Range. The study utilized two models of PurpleAir PM sensors, Flex and SD-II, to provide real-time, accessible data on PM1, PM2.5, and PM10 mass concentrations with the goal of establishing the first research site at the Kennedy Mountain Campus (KMC). The first of the two sites used during this study was at a suburban location outside of Denver, CO. This period was used as an instrument intercomparison period in order to conduct instrument analysis. The initial findings from this period found significant correlations between PM concentration …

Gis-Based Dashboard For Data Analysis And Visualization At The Water Hub In Franschhoek, South Africa, Liliana Rosa Simon

Geography and the Environment: Graduate Student Capstones

This capstone project analyzes the land use change in the Franschhoek Valley, South Africa, and implements this information into an ArcGIS Experience Builder Dashboard. The development of an ArcGIS Experience Builder is utilized as a tool for improved spatial data communication at The Water Hub. An increase in urban development in the informal settlement upstream of the Stiebeuel River in the catchment basin north of the Water Hub research institute is found. The capstone uses geographic information systems, remote sensing, and ArcGIS Experience Builder to integrate spatial data into the Water Hub’s standard operating procedures. It highlights the importance of …

Statistical Modeling Of Knee Morphology And Material Properties Considering Diverse Populations, Gabrielle Jeannine Kindy

Electronic Theses and Dissertations

Total Knee Arthroplasty (TKA) is a widely performed surgical procedure aimed at alleviating pain and restoring function in patients with severe knee osteoarthritis. Despite its general success, disparities in postoperative outcomes have been observed across different racial and ethnic groups, with minority populations often experiencing less favorable results. One potential avenue for improving the generalizability of orthopaedic implants is using Statistical Shape and Intensity Models (SSIMs), which can be used to incorporate patient variability directly into the orthopaedic medical device development workflow through population-based finite element analysis.

This work aimed to construct an SSIM from a diverse subject set, incorporating …

A Cost-Effective Enzyme Kinetics And Inhibition Model For Biochemistry Education And Research, Lauren Vandee, Alyssa Teague, Taylor East, Kim Rhona Jacinto, Macie Carter, Jacey Totty, Paul D. Adams, Djamali Muhoza

Chemistry & Biochemistry Faculty Publications and Presentations

Enzyme kinetics and inhibition studies are crucial in biochemistry education and research. Conventional methods often require expensive equipment and reagents, potentially limiting their accessibility in limited resource settings. Our approach sought to develop a cost-effective experimental design for studying enzyme kinetics and inhibition. Lactase was chosen as a protein model and its activity was investigated by measuring glucose production from lactose hydrolysis. In the study, commercially available lactase pills were used as an enzyme source, while milk was used as a substrate. Instead of scientific equipment, glucometers were used to measure lactase activity. Enzyme kinetics were evaluated using Michaelis–Menten and …

Crystallographic Analysis Of The Dorsal Spine Of Squalus Suckleyi, John V. Karavitis

College of Science and Health Theses and Dissertations

The dorsal spine of the spiny dogfish, Squalus acanthias, has been used for age determination of individual specimens since the 1930s. Scientific literature regarding the dorsal spine has to date always referred to it as having an enamel exterior, with a dentin interior surrounding a central pulp cavity. This is similar to the structure observed in a human tooth.

The dorsal spine is composed of cartilage-based tissue that contains bioapatite. Bioapatite is a mixture of hydroxyapatite, Ca₁₀(PO₄)₆(OH)₂ (a calcium salt of phosphoric acid), and other biological material, e.g. calcium carbonate, CaCO_{3 …}

Evaluating The Influence Of Perfluorooctane Sulfonic Acid Exposure On Blood Glucose Levels: A Comprehensive Multiple Regression Analysis Considering Confounding Factors, Henry Mensah

Theses and Dissertations

Perfluorooctane sulfonate (PFOS) are widely used for industrial and commercial purposes and have received increasing attention due to their adverse effects on health. This thesis investigates the relationship between PFOS exposure and blood glucose levels, considering potential confounding factors. Regression analysis was conducted on a dataset comprising demographic, lifestyle, and biomarker data from a diverse population sample. Sex exhibited a significant role, with females demonstrating an 11.77% increase in blood glucose levels in response to PFOS exposure compared to males, supported by a p-value of 1.04 × 109. Body mass index (BMI) also played a pivotal role, revealing a 2.17% …