Digital Commons Network^™

Deconvolving Provenance Signatures Of Pliocene-Pleistocene Coastal Loess Deposits Along The Atlantic Margin Of Argentina, Will Robert Quanrud

Theses and Dissertations

Dust derived from southern South America provides critical nutrients for autotropic marine biota in the South Atlantic Ocean, such that fluxes of wind-blown sediment may ultimately affect the concentration of atmospheric CO2. Expansive sand, silt, and loess deposits are exposed in Central Argentina, recording millions of years of eolian processes; however, the provenance and transport pathways of this dust remains unclear. Coastal loess deposits ranging in age from Pliocene to upper Pleistocene are present along the Atlantic margin of Argentina and provide information on sediment transport pathways for the last 4 million years. Nine samples of loess were collected and …

Macro–Micro-Coupled Simulations Of Bead–Spring Breaking-Reforming Networks, Andrei Medved

Theses and Dissertations

In this work we investigate the dynamic behavior of bead-spring polymer solutions in viscoelastic fluids, which are essential in industries like materials science, biotechnology, and pharmaceuticals. The study leverages GPU-accelerated simulations and detailed modeling of polymer chain dynamics at the mesoscale, which enables efficient analysis of intricate fluid behaviors and the microscale dynamics of polymer chains. Additionally, the research examines the breaking-reforming dynamics of polymer chains, crucial for understanding phenomena such as shear thinning and thickening. The findings have broad applications, from improving inkjet printing and 3D printing technologies to developing new drug delivery systems and biocompatible materials. This work …

Role Of Vegfa In Intervertebral Disc Pathoanatomy And Low Back Pain, Ryan Potter

McKelvey School of Engineering Graduate Student Theses & Dissertations

Chronic low back pain (LBP) affects more than 80% of Americans and causes significant disability and staggering public health costs. Despite this astonishing prevalence, there are currently no disease modifying therapies. Intervertebral disc (IVD) degeneration accounts for a considerable proportion of LBP, but the precise mechanisms driving the painful pathoanatomy are not understood. The degenerating IVD exhibits a complex array of inflammatory and physiologic changes, and many are associated with the presentation of LBP. For example, the presence of nerves and blood vessels in degenerate IVDs have been identified in patients and animals presenting with LBP symptoms. However, no studies …

Time-Transgressive Microbial Diversity In A Tropical Bat Guano Accumulation, Deer Cave, Mulu, Borneo, Joyce Lundberg, Donald A. Mcfarlane

International Journal of Speleology

Bat guano accumulations in caves can constitute large deposits of organic material, particularly chitin and its degradation products, that host a diverse microbiome. Previous microbiological studies have not addressed the stratified nature of these deposits in the context of the timeframe of the decomposition process. We present such data (temperature, pH, DNA sampling of eight carbon-dated strata) for a 75 cm-deep tropical guano accumulation that undergoes complete decomposition over a timescale of ~120 years. The aerobic, surface layer of freshly-fallen guano has the greatest diversity of taxa, with Bacteroidota co-dominant with Pseudomonadota, and includes many taxa unique to this …

Experimental Determination Of The Unusual Ch Stretch Frequency Of Protonated Fullerenes, Laura Finazzi, Vincent J. Esposito, Julianna Palotás, Jonathan Martens, Els Peeters, Jan Cami, Giel Berden, Jos Oomens

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

We report experimental values for the CH stretch frequencies of the protonated fullerenes C₆₀H⁺ and C₇₀H⁺. Anharmonic frequency calculations at the B3LYP/6-31G level of theory, which are independent of empirical scaling factors, reproduce the experimental values to within approximately 5 cm⁻¹. Scaling theoretical harmonic frequencies by applying factors derived for polycyclic aromatic hydrocarbons deviate significantly from the experimentally measured frequency. We attribute this deviation to the unusual hydrocarbon structure that affects the degree of anharmonicity of the CH stretch. This result allows us to propose an original, specific scaling factor of …

Human-Human Vs Human-Ai Therapy: An Empirical Study, Mohammad Amin Kuhail, Nazik Alturki, Justin Thomas, Amal K. Alkhalifa, Amal Alshardan

All Works

In many nations, demand for mental health services currently outstrips supply, especially in the area of talk-based psychological interventions. Within this context, chatbots (software applications designed to simulate conversations with human users) are increasingly explored as potential adjuncts to traditional mental healthcare service delivery with a view to improving accessibility and reducing waiting times. However, the effectiveness and acceptability of such chatbots remains under-researched. This study evaluates mental health professionals’ perceptions of Pi, a relational Artificial Intelligence (AI) chatbot, in the early stages of the psychotherapeutic process (problem exploration). We asked 63 therapists to assess therapy transcripts between a human …

Impaired Waters: New Treatments And Improved Methods For Pfas And Algae Toxins, Alexandria Forster

Theses and Dissertations

Per- and polyfluoroalkyl substances (PFAS) are high-profile environmental contaminants, many having long persistence in the environment and widespread presence in humans and wildlife. Following phase-out of perfluorooctane sulfonate (PFOS) and perfluorooctanoic acid (PFOA) in North America and restrictions in Europe, PFAS replacements are now widely found in the environment. While liquid chromatography (LC)-mass spectrometry (MS) is typically used for measurement, much of the PFAS is missed. To more comprehensively capture organic fluorine, we developed sensitive and robust methods using activated carbon adsorption, solid phase extraction, and combustion ion chromatography (CIC) to measure total organic fluorine (TOF) in industrial wastewaters, river …

Erlang-Distributed Seir Epidemic Models With Cross-Diffusion, Victoria Chebotaeva

Theses and Dissertations

We examine the effects of cross-diffusion dynamics in epidemiological models. Using reaction-diffusion dynamics to model the spread of infectious diseases, we focus on situations in which the movement of individuals is affected by the concentration of individuals of other categories. In particular, we present a model where susceptible individuals move away from large concentrations of infected and infectious individuals.

Our results show that accounting for this cross-diffusion dynamics leads to a noticeable effect on epidemic dynamics. It is noteworthy that this leads to a delay in the onset of epidemics and an increase in the total number of people infected. …

Assessing Multi-Annual Phytoplankton Community Compositions And Biomass Across Tidal Creek And Open Water Estuarine Habitats In South Carolina, Shannon Elizabeth Powers

Theses and Dissertations

The urbanization of coastal environments in recent decades has caused an accelerating increase in nutrient-rich runoff from the landscape. The presence of these excess nutrients in the aquatic environment can result in degradation of water quality and harmful algal blooms. In South Carolina (SC), coastal development continues to threaten the resiliency of salt marsh estuaries, especially in combination with other stressors like climate change and sea level rise. Estuaries are important nurseries and habitats for fisheries and ecotourism. The South Carolina Estuarine and Coastal Assessment Program (SCECAP) is an ongoing monitoring program that assesses the habitat condition along the coast …

Statistical Inference Based On Elliptically Symmetric Distributions For Directional Data, Zehao Yu

Theses and Dissertations

Directional data arise in many scientific fields such as meteorology, oceanography, geology, zoology, and biomechanics. Geometrically, directional data lie in a spherical space. Although not in a spherical space, compositional data, such as microbiome data, can be mapped from a simplex to a spherical space via the component-wise square-root transformation. Other examples where compositional data emerge as a subject of interest include compositions of minerals in rocks, compositions of chemical mixtures, investment portfolios, and demographic composition of a population. This dissertation aims to develop inference procedures for analyzing directional data in general initially, with later focus shifted to the transformed …

Interventional Radiology's Exploration Into Artificial Intelligence, Raymond Nguyen

Master's Projects and Capstones

Background: Artificial intelligence (AI) has become more prominent in our daily lives in recent years. This includes various aspects of healthcare. Interventional radiology (IR) is one of these specialties that has taken strides in understanding how AI can be leveraged for patient care. This literature review aims to understand what areas will be most impacted by AI in IR and how it will influence both the patient and interventional radiologist.

Methods: Twenty-six publications from 2019-2024 were selected from PubMed and Scopus. Publications were sourced through a combination of keywords, subject headings (MeSH terms), and citation searching.

Results: This literature review …

Hypogenic Caves Of Syracuse Area, Sicily (Italy): Geomorphological Evidence Of Co2 Degassing, Fresh-Salt Water Mixing, And Late Condensation Corrosion, Philippe Audra, Jean-Yves Bigot, Didier Cailhol, Pierre Camps, Ilenia M. D'Angeli, Hai Cheng, R. Lawrence Edwards, Fernando Gàzquez-Sanchez, Gabriella Koltai, Giuliana Madonia, Jean-Claude Nobécourt, Marjan Temovski, Marco Vattano, Jo De Waele

International Journal of Speleology

Many caves in Sicily have been shown to have a sulfuric acid or other hypogenic origin. We studied three caves (Palombara, Scrivilleri, Monello) near Syracuse (eastern Sicily), in an area that was strongly uplifted and faulted, creating multiple Pleistocene marine terraces. Mineralogy, stable isotopes and dating methods (paleomagnetism, U/Th) were used to characterize cave sediments, some of which were related to the initial hypogenic phase (Fe and Mn oxides, calcite spar), others were introduced by surface runoff later. Many other sediments are the result of in situ weathering, such as lime sands produced by condensation-corrosion processes on the calcarenite walls. …

Deep Learning For Source Localization In A Laboratory Tank, Corey Emerson Dobbs

Theses and Dissertations

Deep learning has been applied to underwater acoustics problems in many forms. One difficulty in applying deep learning techniques to ocean acoustics is the spatially and temporally varying environmental properties. Another challenge is the lack of labeled data for training large networks. The overall goal of this work is to develop deep learning approaches for source localization that can be adaptable to different conditions. In this work, a convolutional neural network was trained on acoustic data measured in a water tank, while the water was at room temperature, to predict source-receiver range. Tests were done to ascertain ideal quantities of …

Linking Geospatial Trends And Geochemical Fingerprints To Anthropogenic Phosphorus Dust Deposition In Subalpine Soils, Austen Michael Lambert

Theses and Dissertations

This study shows that fugitive emissions associated with the surface mining of phosphate rock are a significant phosphorus (P) source to surface soils in northeastern Utah. Phosphorus is a nonrenewable resource essential for all life. Anthropogenic alterations to the P-cycle have led to widespread P pollution, and the unsustainable management of P has led to the threat of global depletion of P resources. Thus, accounting for both natural and anthropogenic flow paths of P is essential for the conservation and pollution reduction of P. One such source of human alteration to the P-cycle is the mining of phosphate rock. Mining, …

The Basic Dualism In The World: Object-Oriented Ontology And Systems Theory, Martin Zwick

Complex Systems Faculty Publications and Presentations

Graham Harman writes that the “basic dualism in the world lies…between things in their intimate reality and things as confronted by other things.” However, dualism implies irreconcilable difference; what Harman points to is better expressed as a dyad, where the two components imply one another and interact. This article shows that systems theory has long asserted the fundamental character of Harman’s dyad, expressing it as the union of internal structure and external function, which correspond exactly to what Levi Bryant, characterizing Harman’s views, refers to as the intra-ontic and the inter-ontic, respectively. After interpreting Harman’s dyad in terms of the …

Climate Change And Its Impact On Health: A Global Collaborative Learning Model, Harriet Okatch, Patricia Remshifski, Anita Fennessey, Haley Campbell, Sivia Barnoy, Jason Friedman, Stephen Kern, Rosemary Frasso, Cecilia Sorensen, Tami Bar-Shalita, Louis Hunter

College of Population Health Faculty Papers

To address the health effects of climate change, leaders in healthcare have called for action to integrate climate adaptation and mitigation into training programs for health professionals. However, current educators may not possess sufficient climate literacy and the expertise to effectively include such content in their respective healthcare curricula. We, an international and interprofessional partnership, collaborated with experts to develop and deploy curriculum to increase health educators' and graduate health profession students' knowledge and competencies on climate change. In a tri-step process, the first phase included recruiting interested faculty members from two institutions and varying health professions. In phase two, …

Synthesis Of Addressable Libraries: New Lessons And The Need For Proper Characterization For Microelectrode Array-Based Reactions, Albert Huang

Arts & Sciences Graduate Student Theses and Dissertations

The Moeller group has been developing synthetic tools for building molecular libraries on microelectrode arrays since 2004. Such a library is intriguing because one can take advantage of the library for biological signaling studies. Microelectrode arrays can serve as a powerful platform for those experiments since every electrode in the array can be addressed individually. Unique members of the library targeting biological receptors that one is interested in can be restricted only above unique electrodes in an array. Thus, high-affinity ligands for those receptors can be identified with this strategy. To make this method work, one has to make sure …

Malivhu: A Comprehensive Bioinformatics Resource For Filtering Sars And Mers Virus Proteins By Their Classification, Family And Species, And Prediction Of Their Interactions Against Human Proteins, David Guevara-Barrientos, Rakesh Kaundal

Computer Science Student Research

COVID 19 pandemic is still ongoing, having taken more than 6 million human lives with it, and it seems that the world will have to learn how to live with the virus around. In consequence, there is a need to develop different treatments against it, not only with vaccines, but also new medicines. To do this, human-virus protein-protein interactions (PPIs) play a key part in drug-target discovery, but finding them experimentally can be either costly or sometimes unreliable. Therefore, computational methods arose as a powerful alternative to predict these interactions, reducing costs and helping researchers confirm only certain interactions instead …

Hyperpolarized Magnetic Resonance Imaging, Nuclear Magnetic Resonance Metabolomics, And Artificial Intelligence To Interrogate The Metabolic Evolution Of Glioblastoma, Kang Lin Hsieh, Qing Chen, Travis C Salzillo, Jian Zhang, Xiaoqian Jiang, Pratip K Bhattacharya, Shyan Shams

Faculty, Staff and Student Publications

Glioblastoma (GBM) is a malignant Grade VI cancer type with a median survival duration of only 8-16 months. Earlier detection of GBM could enable more effective treatment. Hyperpolarized magnetic resonance spectroscopy (HPMRS) could detect GBM earlier than conventional anatomical MRI in glioblastoma murine models. We further investigated whether artificial intelligence (A.I.) could detect GBM earlier than HPMRS. We developed a deep learning model that combines multiple modalities of cancer data to predict tumor progression, assess treatment effects, and to reconstruct in vivo metabolomic information from ex vivo data. Our model can detect GBM progression two weeks earlier than conventional MRIs …

Mathematical Modeling, Analysis, And Simulation Of Patient Addiction Journey, Adan Baca, Diego Gonzalez, Alonso G. Ogueda, Holly C. Matto, Padmanabhan Seshaiyer

CODEE Journal

This paper aims to develop a mathematical model to study the dynamics of addiction as individuals go through their detox journey. The motivation for this work is three fold. First, there has been a significant increase in drug overdose and drug addiction following the COVID-19 pandemic, and addiction may be interpreted as a infectious disease. Secondly, the dynamics of infectious disease could be modeled via compartmental models described by differential equations and one can therefore leverage the existing analytical and numerical methods to model addiction as a disease. Finally, the work helps to inform how mathematical models governed by differential …

Re: Butte Priority Soils Operable Unit (Bpsou) Revised Draft Final Insufficiently Reclaimed Sites Field Sampling Plans (Fsps) And Responses To Agency Comments, Mike Mcanulty

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Re: Butte Priority Soils Operable Unit (Bpsou) Revised Draft Final Insufficiently Reclaimed Sites Field Sampling Plans (Fsps) And Responses To Agency Comments, Mike Mcanulty

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

Re: Butte Priority Soils Operable Unit (Bpsou) Revised Draft Final Insufficiently Reclaimed Sites Field Sampling Plans (Fsps) And Responses To Agency Comments, Mike Mcanulty

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.

The Bioremediation Effect Of Microalgae On Wastewater: A Green Technology Approach, Mohamed Ahmed Reda Hamed Dr, Marwa Abdelfattah Abdallah Dr

Journal of Engineering Research

The present study lays an emphasis on the microalgae-based for simultaneous wastewater bioremediation using Chlorella vulgaris and Micrococcus luteus mixed algal cultures to remove its constituent pollutants, amazing green technology guarantees benefits with the decrease in the formation of dangerous solid sludge. Ten days of fully monitoring laboratory experimental program were performed in batch cultures to investigate the effect of various dominant mixing ratios for attaining wastewater concentrations and different governing temperature ranges on the performance of microalgae treatment. The results revealed that there is a significant impact of both wastewater concentrations and temperature treatment conditions on the capability of …

Microbial Phosphate Solubilization Mechanisms In P Solubilizing In Andisol, Agustina Erlinda Marpaung, Tengku Sabrina, Abdul Rauf, Dwi Ningsih Susilowati, Luthfi Aziz Mahmud Siregar

Jurnal Kultivasi

Phosphate (P) nutrient plays a significant role in plant growth and yield. P is an essential element that plays an important role in photosynthesis and root development. Phosphate nutrient availability is deficient in some soil types due to retention, such as in Andisol soil types. High phosphate retention in Andisol soil types causes P nutrients to be unavailable to plants and can reduce crop yields. The availability of P in Andisol soils can be done, among others, by applying phosphate solubilizing microbes. Phosphate solubilizing microorganisms are soil microorganisms consisting of bacteria and fungi that can mineralize organic P, dissolve inorganic …

Assimilating Satellite-Derived Snow Cover And Albedo Data To Improve 3-D Weather And Photochemical Models, Colleen Jones, Huy Tran, Trang Tran, Seth Lyman

Chemistry and Biochemistry Faculty Publications

During wintertime temperature inversion episodes, ozone in the Uinta Basin sometimes exceeds the standard of 70 ppb set by the US Environmental Protection Agency. Since ozone formation depends on sunlight, and less sunlight is available during winter, wintertime ozone can only form if snow cover and albedo are high. Researchers have encountered difficulties replicating high albedo values in 3-D weather and photochemical transport model simulations for winter episodes. In this study, a process to assimilate MODIS satellite data into WRF and CAMx models was developed, streamlined, and tested to demonstrate the impacts of data assimilation on the models’ performance. Improvements …

Making And Breaking Bonds: Studying Intrinsic Chemistry In The Gas-Phase, Luke Metzler

Electronic Theses and Dissertations

The nature of chemical interactions can be difficult to ascertain in the condensed phase; chemistry can be observed, but with the plethora of variables such as solvation, mixes of counter-ions, and complex equilibria, the true intrinsic chemical properties of a given chemical species may be obfuscated. By conducting research in the gas-phase, many of these variables can be reduced, if not eliminated entirely, which can allow for the careful observation of the true physical phenomena driving chemical reactivity.

The research presented herein focuses on the use of ion-trapping (specifically in a linear ion trap) as a method for unveiling the …

Structural Characterization Of The Puma Diapir, Gulf Of Mexico Basin, Rodrigo Velasquez

Electronic Theses and Dissertations

The Gulf of Mexico (GOM) Basin has been a significant target for oil and gas since the 1990s and continues today as a leading exploration target. This super basin is home to an estimated 200 BBOE (Billon barrels of oil equivalent), with current production totaling 60 BBOE for both USA and Mexico. Even though the overall depositional evolution of the GOM has allowed for the key elements for petroleum accumulations to be met, a complex structural framework is present. This framework results from the asymmetric spreading of the North American Plate from the Yucatan block crating the GOM basin we …

Chinese Tallow Long-Term Impact On Stand Dynamics In A Bottomland Hardwood Forest Following Vegetation Management, Nicklaus R. Langlois

Electronic Theses and Dissertations

Chinese tallow (Triadica sebifera (L.) Small) is an invasive tree known to have negative impacts on bottomland hardwood forests. Chinese tallow is proficient in reproducing and surviving in bottomland hardwood forests because it is more flood and shade tolerant than most native trees. The long-term effectiveness of Chinese tallow control is an important topic to research as only a few long-term studies of Chinese tallow control have been conducted. A 10-year re-measurement of 22 paired plots installed in 2012 on the Pineywoods Mitigation Bank near Diboll, Texas following herbicide treatments examined Chinese tallow and native tree stand structure. Each …

Rna Secondary Structures: Structure-Function Studies In Viral And Neurodegenerative Diseases, Caylee Cunningham

Electronic Theses and Dissertations

The studies within this dissertation highlight the importance of RNA structure and function, highlighting potential mechanisms in the pathogenesis of the SARS-CoV-2 virus and hallmarks of ALS. Specifically, the s2m, a 41-nt structure found within the hyper variable region of the 3’ UTR of the SARS-CoV-2 virus, was investigated as this element has no definitive role in viruses but its high conservation in several viral families warrants investigation. We used various biophysical techniques to determine if a palindromic sequence in the terminal loop could participate in dimerization activities, which may have implications in recombination and the longevity of the virus. …