Digital Commons Network^™

Non-Markovian Quantum State Diffusion For Electron Transfer In The Biological Complexes, Muhammad Waqas Haseeb

Thesis/ Dissertation Defenses

The emerging field of quantum biology explores whether non-trivial quantum effects such as entanglement, tunnelling, and environmentally induced memory can contribute meaningfully to biological function alongside classical mechanisms. While such effects have been explored in photosynthesis, enzyme catalysis, and olfaction, their potential relevance to virology remains largely unexplored. Viruses, which straddle the boundary between living and non-living matter, provide a particularly compelling testbed for this inquiry. This thesis investigates a quantum-dynamical paradigm for viral entry, proposing that the earliest stage of SARS-CoV-2 infection may involve vibrationally assisted electron transfer (VA-ET) between the viral Spike protein and the host cell's angiotensin-converting …

Reday Program 2026, Bryant University

Bryant REDay (Research and Engagement Day)

Program for the 2026 Bryant REDay (Research and Engagement Day). Program includes schedule at a glance, descriptions for panels, workshops, and presentations, along with sign-up links for specific sessions in the electronic version of the program. Printed program was in color with double-sided printing on 8 1/2" x 11" paper stapled together in the upper left corner.

Analysis Of The Effects Of Magnetic Field, Heat Transfer, And Thermal Radiation On Blood Flow Through Bifurcated Artery To Enhance Tumor Treatments, Abdullahi Isah, Dauda Gulibur Yakubu, Ali Musa

Tanzania Journal of Science

The work presents the effects of some pertinent parameters on blood flow through bifurcated artery to enhance tumor treatments. Combining appropriately the basic equations, together with the fractionalized Maxwell fluid model allow us to determine the velocity, temperature and concentration of blood flow through bifurcated artery. The study adopted the Atangana-Baleanu fractional time derivative on fluid model to describe the non-Newtonian behavior of blood flow. The numerical simulations were performed using the combined Laplace transform and the method of undetermined coefficients and the results obtained with the aid of Mathcad software were simulated and presented graphically. From the graphical results, …

Long-Term Assessment Of Cattail (Typha Spp.) Dynamics And Wetland Restoration In The Everglades Using Object-Based Landsat Time Series And Markov Modeling, Gideon Tandoh, Stephen Yankyera, Michael Sean Chenoweth

Research, Publications & Creative Work

Assessing long-term vegetation response to restoration requires spatially consistent monitoring approaches that capture both observed change and likely future trajectories. In the Florida Everglades, nutrient enrichment contributed to the expansion of cattail (Typha spp.) within Water Conservation Area 3A (WCA-3A), raising concerns about restoration effectiveness. This study integrates a multi-temporal Landsat time series (2004–2024), object-based image analysis (OBIA), support vector machine (SVM) classification, and Markov transition modeling to quantify and project vegetation change in WCA-3A. Object-based segmentation reduced classification fragmentation in heterogeneous marsh landscapes, while SVM improved separation among spectrally similar vegetation classes. Classification accuracies remained consistently high across sensors …

Artificial Intelligence Assisted Evaluation Of Fungicide Efficacy In Acorn Squash, Olivia Grace Daniels

ASPIRE 2026

Powdery Mildew is a common fungus that infects a multitude of plants. This project will be working with Podosphaera Xanthii, the fungal pathogen that causes powdery mildew in cucurbits. Cucurbitaceae is a plant family that includes squash, pumpkins, melons and watermelons. Powdery mildew ends up significantly reducing the plants yield and infection causes an economic loss for growers which poses a great threat to the farmer’s lively hood. Powdery mildew is also extremely contagious and spreads rapidly to nearby plants. It can be absolutely decimating to populations. So there has been a push to find methods to control the spread …

What It Takes To Solve The Origin Of Life: An Integrated Review. Part 1–Experimental Methods And Data Repositories, Silke Asche, Carla Bautista, Celia Blanco, David Boulesteix, Alexandre Champagne-Ruel, Cole Mathis, Omer Markovitch, Zhen Peng, Avinash Vicholous Dass, Eloi Camprubi

School of Integrative Biological & Chemical Sciences Faculty Publications

The origin(s) of life (OoL), which has puzzled scientists for centuries, remains a major scientific challenge in the 21st century. Research on OoL spans many disciplines, including chemistry, physics, biology, planetary sciences, computer science, and mathematics. The sheer number of different scientific perspectives relevant to the problem has resulted in the coexistence of diverse tools, techniques, data, and software in OoL studies. This has made communication between the disciplines relevant to the OoL extremely difficult because the interpretation of data, analyses, or standards of evidence varies dramatically. Here, we hope to bridge this wide field of study by providing common …

Ai Method For Classification Of Diagnosis Of Near-Infrared Breast Lesion Images, Kaiquan Chen, Fangyang Shen, Honggang Wang, Zhengchao Dong, Jizhong Xiao, Ming Ma, Afroza Aktar, Christopher Chow, Wenxiong Zhang

Publications and Research

In near-infrared optical breast lesion screening and diagnosis systems, high-speed four-dimensional scanners can dynamically acquire tens of thousands of lesion images within a five-minute period. Currently, manual computer annotation is required to generate standard samples from these scanned breast lesion images, a process that depends heavily on physicians with clinical expertise. On average, a single physician can annotate only approximately ten samples per working day. As a result, this process is time-consuming and labor-intensive, and the collected samples often suffer from low accuracy, large variability, and limited diagnostic reliability. Several AI-based annotation tools, such as QuPath, HALO AI™, and X-AnyLabeling, …

Green Synthesis And Characterization Of Silver Nanoparticles Using Dadap Serep (Erythrina Lithosperma) Leaves Extract As A Bioreductor, Fairuz Hammad Albahi, Suyatno Sutoyo, Tukiran Tukiran

Chimica et Natura Acta

Silver nanoparticles (AgNPs) had been widely applied in various fields such as health, food, environment, catalysts, optics, and electronics. The synthesis of silver nanoparticles can be carried using a bottom-up method using by bioreductants derived from natural extracts (green synthesis). This study aims to describe the green synthesis of silver nanoparticles using a bioreductants from dadap serep (E. lithosperma) leaves extract and to determine its characteristics. The synthesis was carried out by varying the volume ratio of dadap serep leaves extract to silver nitrate solution at ratios of 1: 1, 1: 2, 1: 3, and 1: 4, followed by optimization …

Local-Nonlocal Dispersal, Behavioral Responses, And Intervention Strategies In Infectious Disease And Addiction Dynamics, Ghilmana Sarmad

Thesis/ Dissertation Defenses

This dissertation explores how epidemiological and behavioral processes interact across spatial and temporal scales to shape the dynamics of infectious diseases and addiction. Bringing together mathematical rigor and biological realism, it develops and analyzes a series of nonlinear models that capture the effects of spatial heterogeneity, mobility patterns, behavioral adaptation, and intervention strategies. Using tools from semigroup theory, functional analysis, stability analysis, and numerical simulation, the study provides a unified framework for understanding how awareness programs, fear-driven protection, vaccination, and social reinforcement influence transmission thresholds, persistence, and long-term population outcomes.

awareness-based interventions, where a basic reproduction number is derived and …

Tensegrity Across Biological Scales, V. M. Andrianarijaona

Campus Research Month

Over the past two decades, biology has undergone a profound conceptual shift. Living systems are no longer viewed strictly as biochemical networks; they are now understood as mechanically integrated, energy-dissipating, nonequilibrium systems governed by physical laws. Tensegrity—structural stability derived from a balance of pre-stressed tension and compression—provides the essential linking framework between molecular architecture and organismal function. This approach moves beyond "chemistry-only" models to explain how biological integrity and "mechanotransduction" (the conversion of physical force into biochemical signals) emerge from hierarchical, force-regulated networks.

Elucidating The Structure And Binding Nature Of Thianaphthene Dimers Using Gas-Phase Infrared Spectroscopy, Gaia Zucali, Vincent J. Esposito, Sandra Brünken, Piero Ferrari

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Crucial for many biological systems, in astrochemistry, and for fundamental chemistry in general, the conformations adopted by weakly bound complexes of polycyclic aromatic hydrocarbons (PAHs) have been the focus of debate for decades. Still, there are great challenges in forming such complexes in the laboratory, measuring accurate spectroscopic information sensitive to structure, and computing molecular properties for systems subtly bound by dispersive interactions. Here, we employ a combination of gas-phase infrared spectroscopy with extensive density functional theory (DFT) calculations to unambiguously determine the preferred conformation adopted by dimers of neutral thianaphthene, a PAH composed of one six- and one five-membered …

Una To Put Names On 2 Buildings, Jennifer Edwards

Documents

the naming of the Academic Commons Building and the new Science and Technology Building at UNA

The Science And Technology Building University Of North Alabama, Barbie Hampel-University Advancement

Documents

Brochure and floor plans for the New Science and Technology Building at UNA

University Of North Alabama Science And Technology Building Grand Opening And Ribbon Cutting, University Of North Alabama

Documents

Invitation to the Grand Opening and Ribbon Cutting for the new Science and Technology Building at UNA

The Intricate Dance Of Emotions And Psychophysiology: Unveiling The Secrets Of Microexpressions, Jaiteg Singh, Deepika Sharma, Babar Shah, Sukhjit Singh Sehra, Farman Ali, Irfan Hussain

All Works

Background: Emotion recognition plays a pivotal role in behavioral analysis, mental health assessment, and human-computer interaction. Micro-expressions, which are brief and involuntary facial movements, offer valuable insights into concealed emotions. However, validating micro-expressions remains a challenge due to their subtlety and short duration. This study aims to enhance the validation and classification of micro-expressions by integrating electromyogram (EMG) signals with facial action units (AUs). Methods: EMG data was collected using the EMG Muscle Sensor Module V3.0, interfaced with an Arduino Mega 2560 microcontroller. To ensure signal clarity, various data filtration techniques were applied to eliminate noise, motion artifacts, and baseline …

Preliminary Sonification Of Enso Using Traditional Javanese Gamelan Scales, Sandy Hs Herho, Rusmawan Suwarman, Nurjanna J. Trilaksono, Iwan P. Anwar, Faiz R. Fajary

Northeast Journal of Complex Systems (NEJCS)

Sonification—the mapping of data to non-speech audio—offers an underexplored channel for representing complex dynamical systems. We treat El Niño-Southern Oscillation (ENSO), a canonical example of low-dimensional climate chaos, as a test case for culturally-situated sonification evaluated through complex systems diagnostics. Using parameter-mapping sonification of the Niño 3.4 sea surface temperature anomaly index (1870–2024), we encode ENSO variability into two traditional Javanese gamelan pentatonic systems (pelog and slendro) across four composition strategies, then analyze the resulting audio as trajectories in a two- dimensional acoustic phase space. Recurrence-based diagnostics, convex hull ge- ometry, and coupling analysis reveal that the sonification …

Morphology, Phylogeny And Distribution Of Scaeurgus (Cephalopoda: Octopoda) In Southeast Pacific Seamounts, Sergio A. Carrasco, Christian M. Ibáñez, Andrea I. Varela, Jan M. Tapia-Guerra, Erin E. Easton, Javier Sellanes

School of Earth, Environmental, & Marine Sciences Faculty Publications

Octopuses of the genus Scaeurgus inhabit upper bathyal benthic habitats and are composed of five recognized species. In this study, we conducted morphological and molecular phylogenetic analyses of two individuals of Scaeurgus and provided additional field observations of the genus in seamounts of the Nazca and Salas y Gómez ridges (southeast Pacific Ocean) over the last six years. Specifically, two specimens of Scaeurgus were collected at 234 m depth in 2019 during the EPIC oceanographic cruise onboard the R/V Mirai (JAMSTEC, Japan), and five other specimens were video recorded at depths between 210 and 340 m during three oceanographic expeditions …

Sex-Specific Differences In Lung Mitochondrial Function And Injury In Rats Exposed To Hyperoxia, Taheri Pardis, Abraham G. Taye, Devanshi D. Dave, Elizabeth R. Jacobs, Guru Prasad Sharma, Anne V. Clough, Ranjan K. Dash, Said H. Audi

Mathematical and Statistical Science Faculty Research and Publications

Hyperoxia is both an essential therapy and a contributor to lung injury in acute respiratory distress syndrome. We hypothesized that adult female rats are relatively protected from hyperoxia-induced acute lung injury (HALI) compared with males and that this protection is associated with sex-dependent differences in lung mitochondrial bioenergetics and H₂O₂ production. Adult rats were exposed to room air (normoxia) or hyperoxia (>95% O₂) for up to 60 h. Lung injury was assessed by pleural effusion, lung wet weight, pulmonary vascular filtration coefficient (K_f), histologic injury scores, and cleaved caspase-3 (CC3) staining. …

Dna Barcoding Of Eight Freshwater Fish Species (Order Siluriformes) From The River Ravi, Pakistan, Hafiz Muhammad Ashraf, Hafiz Abdullah Shakir, Muhammad Irfan, Shaukat Ali, Chaman Ara, Noor Khan, Muhammad Khan, Abdul Qadir, Muhammad Zafar Saleem

Karbala International Journal of Modern Science

Pakistan's freshwater bodies host significant fish species, but molecular identification is still in its infancy, necessitating the use of morphological and molecular DNA barcoding techniques. The study confirmed the species of the order Siluriformes found in the River Ravi, Pakistan, using DNA extracted from muscle tissue, sequenced for the COI gene, and obtained accession and Barcode Index Numbers from GenBank and BOLD databases. In the BLAST search, identities ranged from 99.23–100% and 99.52–100% in the GenBank and BOLD databases, respectively. The study revealed that the Kimura 2-Parameter genetic distance increased from lower to higher taxonomic levels: within species (0.00%) < within genus (15.17%) < within family (19.77%). The study estimated average nucleotide differences (104.964) and nucleotide diversity (0.16099) but found Tajima's neutrality test to be statistically insignificant. The neighbor-joining tree displayed closely linked species under a node, whereas divergent species were grouped under distinct nodes. The COI gene-based DNA barcoding aids in Pakistan's fish resource inventory, monitoring, and management, providing valuable input for traditional methods.

Eco-Assisted Ultrasonic Synthesis, Characterization, And Electrical Conductivity Study Of Polyaniline/ Silica@Fe3o4 Q1 Nanocomposites, Ali Salim Shaway, Kholoud Dham Khamkheem, Jawad Kadhim Abaies, Athra G. Sager

Karbala International Journal of Modern Science

وفي هذه الدراسة الصوتية، أصبحت السيليكا المُنتجة بأكسيد الحديد (Fe₃O₄) ومركبات نانوية قائمة على البولي أنيلين مُطعّم بنسبة 5-15% من السيليكا المُعزز للحديد (Fe₃O₄). وأكملت نهائيا ماء أنيلين والمركبات العلمية المتنوعة الارتباط باستخدام تقنيات FT-IR وUV-Vis وXRD وSEM وTEM. وأحدثت نتائج XRD أن حجم جسيمات البولينج أنيلين الناي (PANI) يبلغ 55.5. مكثف هذا الحجم إلى 45.2 عند تطعيم بولي أنيلين بنسبة 15% وزناً من السيليكا المُغلفة بأكسيد الحديد (Fe₃O₄) مُحضّرة بطريقة جيدة بشكل جيد، مما يميل إلى التمدد بشكل ثابت في تشكيل المركب المتباين المنظم. ضاقت النطاق البصري من 3.2 إلى 2.5 إلكترون فولت مع زيادة نسبة المطعّم، مما يشير …

Monitoring Of Dissolved Calcium Levels In Creeks, Embayment, And Kentucky Lake Waters In Western Kentucky, Majeda Dalloul

Scholars Week

In order to reduce the economic and ecological impacts of aquatic alien species, studies are warranted across major taxonomic groups, geographic regions, and habitat types. This study addressed the dissolved calcium levels in Kentucky Lake and their implications for one of the top-ranked invasive species, the zebra mussel, and its colonization.  Zebra mussels (Dreissena polymorpha) are well known for their “biofouling” capabilities, costing billions of dollars (for northeastern and midwestern states) in their removal from industrial, public, and power plant water supply lines. Calcium is one of the essential elements that contribute to the growth and reproduction of zebra …

Adaptive Parallel Downloader For Large Genomic Datasets, Rasman Mubtasim Swargo

Miners Solving for Tomorrow Research Conference

Modern next-generation sequencing (NGS) projects routinely generate terabytes of data that researchers download from public repositories such as SRA and ENA. Existing download tools typically employ static concurrency settings, leading to inefficient bandwidth utilization and prolonged download times under dynamic network conditions. We introduce FastBioDL, a parallel downloader for large biological datasets with an adaptive concurrency controller. FastBioDL frames downloading as an online optimization problem, using a utility function and gradient descent to adjust the number of concurrent socket streams during runtime. This approach maximizes throughput while minimizing resource overhead. Evaluations on public genomic datasets show that FastBioDL achieves up …

Harnessing Wavefront Shaping Control For Sensing Applications, Pablo Jara

Miners Solving for Tomorrow Research Conference

Diffuse optical tomography (DOT) and functional near-infrared spectroscopy (fNIRS) enable deep, non-invasive sensing in biological tissue but are fundamentally limited by the photon budget - most injected light is lost to scattering before reaching the detector. Wavefront shaping (WFS) can enhance signal strength inside scattering media via interference, but the conventional diffusion-based sensitivity model breaks down under coherent illumination. We develop a microscopic theory of optical sensitivity that captures interference effects neglected by diffusion theory. We prove analytically that the microscopic and diffusive descriptions coincide under random illumination and identify WFS strategies that enhance sensitivity beyond this limit. The maximum …

Anti-Inflammatory And Insulin-Modulating Effects Of Tithonia-Curcuma-Moringa (Tcm) Formulation In Type 2 Diabetes: An Experimental Study In Mice, Rif’Atul Hawani Burhan, Nabila Shafa Yumna Salsabila, Devita Zulfa Pratama, La Tazkia Aulia Wibowo, Yulian Ervin Maulana, Moh Dliyauddin, Noviana Dwi Lestari, Agung Pramana Warih Marhendra, Aris Soewondo, Hideo Tsuboi, Muhaimin Rifa’I

Karbala International Journal of Modern Science

Type 2 diabetes is a chronic metabolic disorder characterized by hyperglycemia and chronic inflammation. This study investigated the anti-inflammatory and insulin-modulating effects of Tithonia-Curcuma-Moringa (TCM) formulation in type 2 diabetes model. Male BALB/c mice were divided into six groups: normal control, type 2 diabetes control, metformin treatment, and three TCM formulation treatment groups with three different dose combinations. Type 2 diabetes was induced using a high-fat diet combined with streptozotocin injection, supported by sucrose administration. After 21 days of treatment, the spleen and pancreas were isolated for flow cytometry analysis. The results showed that the expression levels of …

Literature Review Of Local Culture-Based Mathematics E-Module With Islamic Values In Probability, Maya Puspita Sari, Surya Sari Faradiba

Jurnal Pendidikan Sains

This study is grounded in the need to address the limitations of probability learning that is often procedural, decontextualized, and disconnected from students’ cultural and religious values. It aims to develop a comprehensive understanding of how local cultural contexts and Islamic values can be systematically integrated into mathematics e-modules, particularly for probability learning, and to formulate structured design principles and quality indicators for their development. This paper adopts a Systematic Literature Review (SLR) approach by analyzing empirical studies published between 2020 and 2025, using a structured selection process involving identification, screening, eligibility, and inclusion stages. A total of 11 high-quality …

The Effect Of Virtual Laboratories On Students Interest And Learning Outcomes In Spermatophyta At Sma Negeri 1 Sojol, Ismawati Ismawati, Sutrisnawati Sutrisnawati, Manap Trianto, Masrianih Masrianih, Abd Rauf, Musdalifah Nurdin

Jurnal Pendidikan Sains

Limited access to physical laboratory facilities and the abstract nature of Spermatophyta material reduce students’ learning interest and outcomes, necessitating the use of innovative digital learning media such as virtual laboratories. This study aims to analyze the effect of Virtual Laboratory (V-Lab) implementation on students’ learning interest and cognitive learning outcomes in Spermatophyta material at the senior high school level. A quantitative quasi-experimental design with a posttest-only control group was employed involving 66 eleventh-grade students divided into experimental and control classes; data were collected using a learning interest questionnaire and a multiple-choice test, and analyzed using independent samples t-test after …

Development Of Problem-Based Teaching Modules On Linear Systems Of Equations And Inequalities To Improve Mathematical Problem-Solving Skills, Elsya Suharnita, Kartini Kartini, Sehatta Saragih

Jurnal Pendidikan Sains

This study addresses the low mathematical problem-solving competency among Indonesian students, as evidenced by the PISA 2018 results that showed 71% failed to meet the minimum mathematical competency level. This study aims to develop a problem-based learning (PBL) module for systems of equations and inequalities content to improve Phase E students' mathematical problem-solving abilities. Using the ADDIE (Analysis, Design, Development, Implementation, Evaluation) model, this study involved expert validation, a small group trial with 12 students, and field implementation using a posttest-only control group design with 24 students in the experimental group and 25 students in the control group. The results …

Augmented Reality In Physics Learning: Trends, Development Patterns, And Instructional Practices From Systematic Literature, Muhammad Musyaddad, Achmad Samsudin, Duden Saepuzaman, Ahmad Aminudin, Nisaul Afifah

Jurnal Pendidikan Sains

This study examines recent developments in the use of augmented reality (AR) in physics education within the evolving landscape of educational technology. The aim is to provide a comprehensive mapping of research trends, pedagogical approaches, and methodological characteristics of AR-based physics learning. Following PRISMA guidelines, a systematic search across four major databases identified 62 eligible studies published over the past five years. The findings reveal a consistent pattern in which AR is primarily used to support conceptual understanding of abstract physics topics, particularly electricity, mechanics, and magnetism, through inquiry-based and laboratory-oriented learning approaches. These implementations are commonly developed using systematic …

Reading Literacy Research Trends In Science Learning (2015–2025), Siwi Handayani, Siswanto Siswanto, Rina Rahayu

Jurnal Pendidikan Sains

This study aims to analyze research trends in reading literacy within science learning from 2015 to 2025 through a Systematic Literature Review (SLR) following the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) framework. The initial screening of 150 articles from the WoS Core Collection and SINTA databases yielded 29 articles that met the inclusion criteria. The analysis focused on publication dynamics, contributing countries, participant characteristics, research variables, and the science subjects investigated. The findings indicate that research on reading literacy in science learning remains limited and shows fluctuating development. Most publications originate from national journals indexed by SINTA, …

Improving Energy Reliability In Mining Areas Through Modelling And Control Of Resonance Phenomena In Solar-Integrated Power Systems, Yurii Papaika, Gennadiy Pivnyak, Maksim Malyshko, Yuliya Pazynich, Natalia Howaniec, Adam Smolinski

Journal of Sustainable Mining

This study addresses the emergency and operational transient processes that arise when integrating large-scale solar power plants (SPPs) into electrical load nodes, particularly under conditions of limited power system capacity. With the increasing penetration of distributed generation in Ukraine's energy landscape, challenges related to electromagnetic compatibility and harmonic resonance are becoming more prominent. The research builds upon the foundational work of leading Ukrainian scientific schools and focuses on the specific resonance phenomena observed during the operation of solar inverters in medium-voltage networks, especially in regions with high industrial and mining Energy demand. A novel algorithm is proposed for determining the …