Digital Commons Network^™

Does Genetic Testing Influence Outcomes: Early Experience In Melanoma Case Series, Ryan Reyes, George Skenteris, Stella Coker Watson Self Ph.D., Ms, Christine Marie-Gilligan Schammel, Steven D. Trocha

Faculty Publications

Background:

The treatment and prognosis of melanoma have historically been based on histologic stage and Breslow depth; however, due to the increase in surveillance, melanomas are being identified at an earlier stage and lower Breslow depth. Advances in genetic testing, such as Decision Dx®, mean that melanoma diagnostic decisions and prognosis can now be directed by genetics. The purpose of this project was to assess the influence of a Decision Dx® high-grade (Class 2A/B) classification on the treatment of melanoma patients at a regional medical center, particularly those not deemed high risk by conventional classification methods, including Breslow depth and …

Using Large Language Models To Analyze Political Texts Through Natural Language Understanding, Kenneth Benoit, Scott De Marchi, Conor Laver, Michael Laver, Jinshuai Ma

Research Collection School of Social Sciences

Large language models (LLMs) offer scalable alternatives to human experts when analyzing political texts for meaning, using natural language understanding (NLU). Qualitative NLU methods relying on human experts are severely limited by cost and scalability. Statistical text-as-data methods are scalable but rely on strong and often unrealistic assumptions. We propose a systematic, scalable, and replicable method that can extend existing qualitative and quantitative approaches by using LLMs to interpret texts meaningfully rather than as mere data. Our ensemble means of LLM-generated estimates of party positions on six key issue dimensions correlate highly with equivalent mean ratings by country specialists. When …

Molecular Lung Imaging Following Exposure To Radiation Predicts Long-Term Survival In Rats, Anne V. Clough, Kathrina Mpala, Taheri Pardis, Laura Norwood Toro, Andreas M. Beyer, Tracy Gasperetti, Ming Zhao, Sarah Kerns, Heather A. Himburg, Said H. Audi

Mathematical and Statistical Science Faculty Research and Publications

Delayed effects of acute radiation exposure (DEARE), including radiation pneumonitis (lung-DEARE), develop weeks to months after radiation exposure. Pathway-targeted biomarkers that capture early oxidative stress and cell death could improve risk stratification and provide objective measures of mitigator efficacy. The objective was to test whether molecular lung imaging predicts long-term survival and mitigator response after irradiation. Rats received 13.5 Gy leg-out partial-body irradiation with a subset treated with the radiation-injury mitigator lisinopril. Rats underwent lung imaging at weeks 2 and 4 post-irradiation with ^99mTc-duramycin (cell death) and ^99mTc-HMPAO (oxidative stress). Plasma mitochondrial damage-associated molecular patterns (mtDAMPs) were also …

Stock Market Price Prediction Using Big Data Models Comparison Analysis, Vibhor Pal

Shelby Hall Graduate Research Forum Posters

The stock market consists of complex financial datasets, and achieving stock price real time prediction needs an efficient big data framework for processing. This paper compares big data distributed data processing frameworks for forecasting stock prices using Graph Neural Networks (GNNs) - Apache Flink and Apache Spark. We analyze 70 publicly traded companies’ monthly data for the last 5 years from Yahoo Finance, ranked by Price-to-Earnings (P/E). In the companies’ datasets, there may be a connection or similarity between companies, and this can lead to similar stocks’ price behavior. These interfirm relationships are maintained by GNNs models, and their output …

Text Corpus Combined Method And Tools For Music Textual Analysis, Yuwei Lu

Shelby Hall Graduate Research Forum Posters

While there has been a great deal of research conducted on how to search images and video using text, there has been less focus on how to retrieve music using multiple facets such as mood and lyrical content. or its features This is due in part to the historical lack of available musical corpuses. A musical corpus is a specialized text corpus specifically designed to capture information about music. Recently, several musical corpora for music information retrieval have been built and made available. However, these corpora and the tools designed to exploit them are typically designed to facilitate only one …

Improving Consensus In Blockchain, Nelson Navas

Shelby Hall Graduate Research Forum Posters

Called the 4th industrial revolution, Industry 4.0 is the latest paradigm for implementing industrial applications. This new approach relies heavily on increased automation, smart machines, human-machine interaction, AI, and telecommunications. Industry 4.0 applications introduce the idea of the smart factory. The integration of information technology (IT) and operational technology (OT) is a key factor that promotes efficiency in the supply chain. All this is predicated in the generation, sharing, and storage of large quantities of data and transactions to facilitate management, traceability, and control of industrial processes. Increased reliance on interconnectedness causes cybersecurity challenges. Access to machinery, infrastructure, IT systems, …

Wayne E. Sabbe Arkansas Soil Fertility Studies 2025, Nathan A. Slaton

Arkansas Agricultural Experiment Station Research Series

Rapid technological changes in crop management and production require that the research efforts be presented in an expeditious manner. The contributions of soil fertility and fertilizers are major production factors in all Arkansas crops. The studies described within will allow producers to compare their practices with the university’s research efforts. Additionally, soil-test data and fertilizer sales are presented to allow comparisons among years, crops, and other areas within Arkansas.

An Odd Protocol For An Agent-Based Model Of Hepatitis C Virus Transmission In A Homogeneous Syringe-Sharing Network, Seun Ale, Que Thi Nguyet Nguyen Dr., John D. Kelleher Prof., Elizabeth Hunter Dr.

Reports

The model described in this ODD is an agent-based model of hepatitis C virus (HCV) transmission among people who inject drugs (PWID). The model assumes homogeneous mixing among syringe-sharing agents, without any form of heterogeneity in the agents interactions or syringe-sharing attitude. All syringe-sharing PWID are treated as identical in terms of their interaction frequency and syringe-sharing probability. Interactions are generated dynamically using proximity-based sampling at each timestep (one day), allowing agents to form syringe-sharing interactions based on spatial closeness. The number of daily interaction events is fixed at the population level, and each syringe-sharing agent has the same probability …

An Odd Protocol For An Agent-Based Model Of Hepatitis C Virus Transmission With Inter-Group Structural And Behavioural Heterogeneous Syringe-Sharing Networks (M4), Seun Ale, Que Nguyen Dr., John D. Kelleher Prof., Elizabeth Hunter Dr.

Reports

The model described in this ODD is an agent-based model of hepatitis C virus (HCV) transmission among people who inject drugs (PWID). The model incorporates structural heterogeneity through a three-group interaction framework and behavioural heterogeneity through group-specific syringe-sharing rates. The syringe-sharing population in the model is divided into core, inner, and outer circle groups representing individuals with high, moderate, and low levels of syringe-sharing interaction intensity, respectively. In addition to differences in the number of daily interaction opportunities across groups, agents in each group are assigned distinct syringe-sharing probabilities, reflecting variation in risk-taking behaviour across structural groups within the syringe-sharing …

Stard-Net: Spatiotemporal Attention For Robust Detection Of Tiny Airborne Objects From Moving Drones, Hasibur Rahman, Sanjay Kumar Madria

Computer Science Faculty Research & Creative Works

The rapid adoption of drones across various domains, alongside advancements in computer vision, has driven growing interest in vision-based airborne object detection from moving aerial platforms. However, this task remains challenging due to the small scale of objects, camouflage within cluttered backgrounds, and occlusions. To address these challenges, we introduce an end-to-end detection framework that integrates a Drone Receptive Field Block (DRFB) to extract multiscale and geometrically diverse features, specifically designed to enhance the detection of small and camouflaged airborne objects. To model motion patterns over time while preserving spatial structure, particularly for detecting camouflaged, cluttered and occluded objects with …

Argument-Based Consistency In Toxicity Explanations Of Llms, Ramaravind K. Mothilal, Joanna Roy, Syed Ishtiaque Ahmed, Shion Guha

Health Services and Informatics Research

The discourse around toxicity and LLMs in NLP largely revolves around detection tasks. This work shifts the focus to evaluating LLMs’ reasoning about toxicity—from their explanations that justify a stance—to enhance their trustworthiness in downstream tasks. Despite extensive research on explainability, it is not straightforward to adopt existing methods to evaluate free-form toxicity explanation due to their over-reliance on input text perturbations, among other challenges. To account for these, we propose a novel, theoretically-grounded multi-dimensional criterion, Argument-based Consistency (ArC), that measures the extent to which LLMs’ free-form toxicity explanations reflect an ideal and logical argumentation process. Based on uncertainty quantification, …

Graph Convolution Neural Network And Deep Q-Network Optimization-Based Intrusion Detection With Explainability Analysis, Kelvin Mwiga, Mussa Dida, Leandros Maglaras, Ahmad Mohsin, Helge Janicke, Iqbal H. Sarker

Research outputs 2022 to 2026

As networks expand in size and complexity, coupled with an exponential increase in intrusions on network and IoT systems, this leads to traditional models failing to capture increasingly intricate correlations among network components accurately. Graph Convolution Networks (GCNs) have recently acquired prominence for their capacity to represent nodes, edges, or entire graphs by aggregating information from adjacent nodes. However, the correlations between nodes and their neighbours, as well as related edges, differ. Assigning higher weights to nodes and edges with high similarity improves model accuracy and expressiveness. In this paper, we propose the GCN-DQN model, which integrates GCN with a …

Software Engineering In The Age Of Coding Agents: Failure Modes And Rejection Patterns, Mahd Mohd Hindi

Theses

This thesis investigates the real-world behavior of LLM-driven coding agents that generate code changes and submit pull requests (PRs) to public software repositories. As these tools evolve from autocomplete-style assistants into more autonomous agents, their contributions increasingly interact with socio-technical review processes (human reviewers, bots, CI/CD gates, and project norms). The thesis focuses on understanding why agent-generated PRs are accepted or rejected and what these outcomes reveal about current agent limitations in practical development workflows.

The main objective of this thesis is to systematically characterize rejection patterns and failure modes of agent-generated pull requests in real repositories. Specifically, the thesis …

Optimizing And Fortifying Ai Software Through The Lens Of Artifact Synthesis, Jieke Shi

Dissertations and Theses Collection (Open Access)

Artificial Intelligence (AI) has transformed the software landscape, ushering in a new era of intelligent systems that increasingly shape our daily lives. This transformation is evident in various domains, including Software Engineering (SE), where Large Language Models (LLMs) support many development tools, and control systems, where self-driving cars and autonomous drones rely on deep learning models for real-time decision-making. These AI systems are collectively referred to as AI software, with the former categorized as AI4SE software (AI for Software Engineering) and the latter as AI4Control software (AI for Control). As AI software becomes central to modern computing infrastructure, its reliability …

A Cryptographic Perspective On The Verifiability Of Quantum Advantage, Nai-Hui Chia, Honghao Fu, Fang Song, Penghui Yao

Computer Science Faculty Publications and Presentations

In recent years, achieving verifiable quantum advantage on a NISQ device has emerged as an important open problem in quantum information. The sampling-based quantum advantages are not known to have efficient verification methods. This article investigates the verification of quantum advantage from a cryptographic perspective. We establish a strong connection between the verifiability of quantum advantage and cryptographic and complexity primitives, including efficiently samplable, statistically far but computationally indistinguishable pairs of (mixed) quantum states (EFI), pseudorandom states (PRS), and variants of minimum circuit size problems (MCSP). Specifically, we prove that a) a sampling-based quantum advantage is either verifiable or can …

Automated Machine Learning For High-Resolution Daily And Hourly Methane Emission Mapping For Rice Paddies Over South Korea: Integrating Modis, Era5-Land, And Soil Data, Jiah Jang, Seung Hee Kim, Menas Kafatos, Jaeil Cho, Gayoung Yoo, Sujong Jeong, Yangwon Lee

Institute for ECHO Articles and Research

Agriculture is a major global source of methane (CH4), and accurate emission estimates are essential for refining national greenhouse gas inventories and supporting climate-resilient policies. This study develops a high-resolution estimation framework for CH4 emissions from Korean rice paddies by integrating multi-source datasets, including Moderate Resolution Imaging Spectroradiometer (MODIS) vegetation indices, European Centre for Medium-Range Weather Forecasts (ECMWF) Reanalysis Version 5 (ERA5)-Land meteorological variables, and Harmonized World Soil Database (HWSD) soil properties. Using CH4 flux observations from four global rice ecosystems (Italy, Japan, South Korea, and USA), we constructed parallel daily and hourly machine learning models using an automated machine …

Driver Behavior Analyzer 2.0: A Modular Framework For Interpretable Driver Safety Analysis From Obd-Ii And Gps Telemetry, Sangwhan Cha, Venkata Sundar Kamesh Durvasula

Harrisburg University Other Works

Driver behavior analysis plays a central role in advancing road safety and enabling data-driven driver feedback. Although commercial telematics platforms offer sophisticated analytics, they are frequently expensive, proprietary, and optimized for enterprise-scale use. At the same time, low-cost On-Board Diagnostics II (OBD-II) adapters make telemetry collection widely accessible, but they typically do not provide higher-level behavioral interpretation.

In this paper, we present Driver Behavior Analyzer 2.0 (DBA 2.0), an offline-first, modular analytics framework that converts OBD-II and GPS telemetry into interpretable safety insights. DBA 2.0 supports ingestion of telemetry logs in CSV and JSON formats, data normalization, rule-based detection of …

In What Style Shall I Confront Them? The Role Of Social Relationships In Social Correction Of Misinformation Among The Uk And Arab Social Media Users, Muaadh Noman, Mohamed B. Almourad, Ala Yankouskaya, Firoj Alam, Raian Ali

All Works

This study investigates how social factors influence the likelihood of employing direct or indirect communication styles when correcting misinformation on social media in two different cultural contexts, the United Kingdom (UK) and the Arab Gulf Cooperation Council (GCC) countries. We conducted an online survey, supported by vignettes, that involved 686 participants, 367 from the UK and 319 from the Arab GCC countries. Participants were presented with a misinformation scenario and asked about their likelihood of using direct or indirect communication styles to correct their acquaintances. The survey captured variations in gender similarity (same vs. different gender), social status (lower vs. …

Generative Ai For Text-To-Video Generation: Recent Advances And Future Directions, Kadhim Hayawi, Sakib Shahriar

All Works

Text-to-video (T2V) generation has recently emerged as a transformative technology within the field of generative AI, enabling the creation of realistic, temporally coherent videos based on natural language descriptions. This paradigm provides significant added value in many domains such as creative media, human-computer interaction, immersive learning, and simulation. Despite its growing importance, systematic discussion of T2V is still limited compared with adjacent modalities such as text-to-image and image-to-video. To alleviate the scarcity of discussions in the T2V field, this paper provides a systematic review of works published from 2024 onward, consolidating fragmented contributions across the field. We survey and categorize …

Identification Of Microplastics And Additives From The Lake Erie Watershed And The Cuyahoga River Via Maldi-Ms And Dart-Ms, Chrys Wesdemiotis, Calum Bochenek, Luciana Rivera Molina, Robert Brand

University Research

Micro(nano)plastics have received increased attention as environmental contaminants due to their harmful effects on ecosystems and human health. Conventional extraction methods for microplastic analysis are often lengthy and complicated, resulting in the loss of important chemical components such as additives. In this study, we provide a complementary approach, utilizing matrix-assisted laser desorption/ionization (MALDI) and direct analysis in real time (DART) mass spectrometry (MS) techniques, with minimal extraction and sample preparation to preserve both polymer and additive information. MALDI-MS was applied to aqueous samples collected along the shores of Lake Erie and the Cuyahoga River, successfully identifying the base polymer(s) in …

No Name Ditch Filter Request, Chad Pritchard, Sonja Durr

EWU PFAS Research Collection

This is a one-page request showing the need for filtration at No Name Ditch at the SE corner of Fairchild Air Force Base (FAFB), West Plains, Spokane County, Washington.  Surface water levels in the ditch and stormwater ponds that feed the system can exceed 20,000 ppt for PFOS while groundwater can be up to 2,000 ppt for PFOS, per a remedial investigation report for FAFB in 2025.  The federal drinking water standard for PFOS is 4 ppt. While surface water and stormwater are not regulated for PFAS levels, these polluted waters enter the groundwater just off base and likely contaminate …

Opencil: Benchmarking Out-Of-Distribution Detection In Class Incremental Learning, Wenjun Miao, Guansong Pang, Trong-Tung Nguyen, Ruohuan Fang, Jin Zheng, Xiao Bai

Research Collection School Of Computing and Information Systems

Class incremental learning (CIL) aims to learn a model that can not only incrementally accommodate new classes, but also maintain the learned knowledge of old classes. Out-of-distribution (OOD) detection in CIL is to retain this incremental learning ability, while being able to reject unknown samples that are drawn from different distributions of the learned classes. This capability is crucial to the safety of deploying CIL models in open worlds. However, despite remarkable advancements in the respective CIL and OOD detection, there lacks a systematic and large-scale benchmark to assess the capability of advanced CIL models in detecting OOD samples. To …

Comprehensively Evaluating The Perception Systems Of Autonomous Vehicles Against Hazards, Xiaodong Zhang, Jie Bao, Jianlei Chi, Jun Sun, Zijiang Yang

Research Collection School Of Computing and Information Systems

Perception systems are vital for the safety of autonomous driving. In complex autonomous driving scenarios, autonomous vehicles must overcome various natural hazards, such as heavy rain or raindrops on the camera lens. Therefore, it is essential to conduct comprehensive testing of the perception systems in autonomous vehicles against these hazards, as demanded by the regulatory agencies of many countries for human drivers. Since there are many hazard scenarios, each of which has multiple configurable parameters, the challenges are (1) how do we systematically and adequately test an autonomous vehicle against these hazard scenarios, with measurable outcome; and (2) how do …

Interpretable Machine Learning For Personalized Profiling Of Mild Cognitive Impairment From Daily Activities, Budhitama Subagdja, Ah-Hwee Tan, Kenneth Kwok, Iris Rawtaer

Research Collection School Of Computing and Information Systems

Continuous monitoring of individual daily activities is essential to detect mild cognitive impairment (MCI) wherein timely intervention can still be applied to prevent more severe mental decline. Recent approaches in predicting MCI are mostly considering digital biomarkers across individuals but often neglecting specific indicators from a single person over a long period of time. Making this personalized, dynamic, and highly noisy prediction model with irregular distribution of missing information to be explainable and actionable for clinical use, remains a challenge. This paper presents a study on a personalized MCI prediction and profiling from an in-home and mobile cognitive health monitoring …

Addressing Graph Heterogeneity And Heterophily From A Spectral Perspective, Kangkang Lu, Yanhua Yu, Ruopei Guo, Nan Cheng, Zhiyong Huang, Yunshan Ma, Meiyu Liang, Yuling Wang, Xiting Qin, Yimeng Ren, Tat-Seng Chua

Research Collection School Of Computing and Information Systems

Graph Neural Networks (GNNs) face two key challenges, heterogeneity and heterophily, which often degrade performance. Existing approaches either focus narrowly on specific meta-paths, limiting their expressiveness, or are expressive but cannot effectively leverage higher-order neighbors. In this paper, we propose the Heterogeneous Heterophilic Spectral Graph Neural Network (H2SGNN), which combines local independent filtering to adaptively handle meta-path subgraphs with varying homophily ratios, and global hybrid filtering to capture high-order neighbor interactions with linear computational complexity. On five heterogeneous graph benchmarks—DBLP, ACM, IMDB, AMiner, and Yelp—H2SGNN consistently outperforms strong baselines, for example, achieving +1.0% Macro-F1 and +1.3% Micro-F1 on IMDB. It …

Navigating Ethical Considerations And Implications Of Ai Chatbots In Higher Education: A Systematic Review, Ons Al-Shamaileh, Ramy Hammady, Mahmoud Abdelrahman, Omar Mubin

All Works

This systematic review explores the ethical challenges associated with the use of AI-based chatbots in higher education, focusing on their implications for students, educators, institutions, and administrative stakeholders. Following PRISMA guidelines, peer-reviewed literature published between 2014 and 2024 was systematically identified across eight major academic databases, yielding a total of 109 eligible studies. A thematic analysis of the included literature indicates that concerns related to academic integrity are most frequently discussed, alongside recurring issues involving data privacy and security, algorithmic bias, overreliance on automated systems, and the risk of inaccurate or misleading outputs. The findings further demonstrate considerable variation in …

Vaccination Games Of Boundedly Rational Parents Toward New Childhood Immunization, Wei Yin, Martial L. Ndeffo-Mbah, Tamer Oraby

School of Mathematical & Statistical Sciences Faculty Publications

Infectious diseases harm societies through disease-induced morbidity, mortality, loss of productivity, and inequality. Thus, controlling and preventing them is critical for public health and societal well-being. However, societies can hinder efforts to control the spread of diseases by failing to adhere to public health recommendations, such as through vaccine hesitancy. Various disease-transmission models have been utilized to help policymakers respond to (re)emerging outbreaks. The usefulness of such models in assessing the effectiveness of public health policies is significantly dependent on human behavior. This paper introduces a new model of parental behavior toward a new childhood immunization. The model incorporates societal …

Watersmart Farms - Desalination: Summary Report, Wendell Ela, Abdulla Rasheed, Sharmina Begum, Vaibhav Patel, Goruck Soubans, John K. Ruprecht, V Ravisankar, S Aktar, B Husbands, L Li

Natural resources commissioned reports

In 2026, Murdoch University completed a series of investigations into farm and community scale desalination in the Wheatbelt of Western Australia for the Department of Primary Industries and Regional Development (DPIRD) and Water Corporation. The key studies investigated farm scale desalination, community scale desalination, best practice techniques for desalination in agriculture and brine management review.

The key findings of the studies are presented here, followed by an overview of the considerations concerning the potential for desalination across the Wheatbelt. Readers are referred to the Technical Reports for more detailed information.

This report is an overview of the following reports:

Ela, …

X-Ray Emission In Illustristng Circum-Cluster Environments: Ii. Possible Origins Of The Soft X-Ray Excess Emission, Celine Gouin, Daniela Galárraga-Espinosa, Massimiliano Bonamente, Stephen Walker, Mohammad Mirakhor, Richard Lieu, Clotilde Laigle, Etienne Bonnassieux, Charlotte Welker, Stefano Gallo, Tony Bonnaire, Jade Paste

Publications and Research

Context. An excess of soft X–ray emission (∼0.2 − 1 keV) above the contribution from the hot intracluster medium (ICM) has been detected in a number of galaxy clusters, including the Coma cluster. The physical origin of this emitting medium above the hot ICM has not yet been determined, in particular, it is unclear whether it is thermal or nonthermal.

Aims. We investigate the gas phase and gas structure that reproduce the soft excess radiation from the cluster core to the outskirts best using simulations.

Method. By using the IllustrisTNG simulation (TNG300), we predict the radial profile of thermodynamic properties …

An Explainable Transformer-Based Model For Phishing Email Detection: A Large Language Model Approach, Mohammad Amaz Uddin, Md Mahiuddin, Iqbal H. Sarker

Research outputs 2022 to 2026

Phishing email is a serious cyber threat that tries to deceive users by sending false emails with the intention of stealing confidential information or causing financial harm. Attackers, often posing as trustworthy entities, exploit technological advancements and sophistication to make the detection and prevention of phishing more challenging. Despite extensive academic research, phishing detection remains an ongoing and formidable challenge in the cybersecurity landscape. In this research paper, we present a fine-tuned transformer-based masked language model, RoBERTa (Robustly Optimized BERT Pretraining Approach), for phishing email detection. In the detection process, we employ a phishing email dataset and apply the preprocessing …