Digital Commons Network^™

Challenges In Synchronous And Remote Collaboration Around Visualization, Matthew Brehmer, Maxime Cordeil, Christophe Hurter, Takayuki Itoh, Wolfgang Büschel, Mahmood Jasim, Arnaud Prouzeau, David Saffo, Lyn Bartram, Sheelagh Carpendale, Chen Zhu-Tian, Andrew Cunningham, Anthony Tang, Samuel Huron, Masahiko Itoh, Arpit Joshi, Kiyoshi Kiyokawa, Hideaki Kuzuoka, Bongshin Lee, Guillermo Molina León

Research Collection School Of Computing and Information Systems

We characterize 16 challenges faced by those investigating and developing remote and synchronous collaborative experiences around visualization. Our work reflects the perspectives and prior research efforts of an international group of 29 experts from across human-computer interaction and visualization sub-communities. The challenges are anchored around five collaborative activities that exhibit a centrality of visualization and multimodal communication. These activities include exploratory data analysis, creative ideation, visualization-rich presentations, joint decision making grounded in data, and real-time data monitoring. The challenges also reflect the changing dynamics of these activities in the face of recent advances in extended reality (XR) and artificial intelligence …

Understanding Codebase Like A Professional! Human-Ai Collaboration For Code Comprehension, Jie Gao, Yue Xue, Xiaofei Xie, Junming Cao, Soemin Thant, Erika Lee, Bowen Xu

Research Collection School Of Computing and Information Systems

Understanding an unfamiliar codebase is an essential task for developers in various scenarios, such as during the onboarding process. Especially when the codebase is large and time is limited, achieving a decent level of comprehension remains challenging for both experienced and novice developers, even with the assistance of large language models (LLMs). Existing studies have shown that LLMs often fail to support users in understanding code structures or to provide user-centered, adaptive, and dynamic assistance in real-world settings.To address this, we propose learning from the perspective of a unique role, code auditors, whose work often requires them to quickly familiarize …

Ultra-High Vacuum Outgassing Characterization Of Thermally Processed Low-Carbon Steel For Advanced Particle Accelerator And Gravitational Wave Detector Applications, Aiman H. Al-Allaq

Mechanical & Aerospace Engineering Theses & Dissertations

This dissertation investigated AISI 1020 low-carbon steel as an alternative vacuum chamber material to conventional stainless steel for ultra-high vacuum (UHV) and extreme-high vacuum (XHV) applications. After a 400 °C/48 h bake, AISI 1020 tube chambers achieved a hydrogen outgassing rate of 2.4 × 10⁻¹⁶ Torr·L·s⁻¹·cm⁻², approximately 2,300 times lower than the prebaked 316L stainless-steel comparator, among the lowest hydrogen outgassing rates ever reported for an uncoated metallic vacuum chamber. Bare and magnetite-coated AISI 1020 chambers were then compared using throughput and rate-of-rise methods. The magnetite coating yielded 5× lower water outgassing at room temperature, but this advantage disappeared after …

Dissecting The Etiology Of Alcohol Use Disorder By An Integrative Heritable Component Approach, Ivy Garrenton

Computer Science Theses & Dissertations

Alcohol Use Disorder (AUD) is a pervasive condition characterized by complex interplay among genetic, phenotypic, and environmental factors. Although previous studies have identi fied genetic loci associated with alcohol consumption, these efforts have not captured the genetic heterogeneity and gene-environment interactions underlying AUD pathogenesis. To address this critical gap, we developed a novel statistical methodology that integrates phenotypic, genotypic, and environmental data through an environmentally modified Genetic Relationship Matrix (GRM) to derive AUD-related traits with enhanced heritability.

This approach demonstrated superior performance in both simulated and real-world datasets. Traits derived using the environmentally modified GRM exhibited significantly higher estimated heritability …

Software Engineering In The Age Of Coding Agents: Failure Modes And Rejection Patterns, Mahd Mohd Hindi

Thesis/ Dissertation Defenses

This thesis investigates the real-world behavior of LLM-driven coding agents that generate code changes and submit pull requests (PRs) to public software repositories. As these tools evolve from autocomplete-style assistants into more autonomous agents, their contributions increasingly interact with socio-technical review processes (human reviewers, bots, CI/CD gates, and project norms). This thesis focuses on understanding why agent-generated PRs are accepted or rejected and what these outcomes reveal about current agent limitations in practical development workflows. The main objective of this thesis is to systematically characterize rejection patterns and failure modes of agent-generated pull requests in real repositories. Specifically, the thesis …

Software Engineering In The Age Of Coding Agents: Failure Modes And Rejection Patterns, Mahd Mohd Taysir Hindi

Thesis/ Dissertation Defenses

This thesis investigates the real-world behavior of LLM-driven coding agents that generate code changes and submit pull requests (PRs) to public software repositories. As these tools evolve from autocomplete-style assistants into more autonomous agents, their contributions increasingly interact with socio-technical review processes (human reviewers, bots, CI/CD gates, and project norms). This thesis focuses on understanding why agent-generated PRs are accepted or rejected and what these outcomes reveal about current agent limitations in practical development workflows. The main objective of this thesis is to systematically characterize rejection patterns and failure modes of agent-generated pull requests in real repositories. Specifically, the thesis …

Employing Effective Solution Methods For Caputo-Based Sequential Fractional Models, Eman A. A. Ziada, Mohamed F. Abouelenein, Hijaz Ahmad, Monica Botros

Mathematical Modelling and Numerical Simulation with Applications

This paper investigates a class of nonlinear sequential singular fractional differential equations (FDEs) involving Caputo derivatives. This type of equation has several key advantages that enhance its value, such as capturing memory and hereditary effects. Viscoelastic materials and anomalous diffusion, as well as biological systems, can take advantage of this feature. In addition, fractional derivatives possess a sequential structure that enables the implementation of multiscale processes and hierarchical memory responses. Moreover, it provides an effective and flexible framework for solving differential equations compared to classical differential equations. It can therefore be used to model complex systems in physics, biology, and …

Optimal Control Strategies For Infectious Diseases: A Numerical Simulation Approach, M. Abu Salek, Jannatun Nayeem, Romana Yesmin, M. Haider Ali Biswas, M. Humayun Kabir

Mathematical Modelling and Numerical Simulation with Applications

Various infectious diseases, such as Tuberculosis and Hepatitis B virus (HBV), caused by Mycobacterium bacteria and hepatitis B virus, respectively, pose serious threats worldwide. This paper examines the spread of these diseases using a mathematical model that incorporates control measures, including vaccination and awareness programs. We use a system of differential equations with control variables and apply Pontryagin's principle to determine optimal control strategies. The stability of the Disease Free Equilibrium (DFE) has been analysed and demonstrated to be both locally and globally asymptotically stable when the basic reproduction number remains below unity, thereby ensuring disease elimination. Furthermore, the Endemic …

Toxicity, Chemistry, And Public Health Relevance Of Emerging Nicotine Analog Vapes, Pods, And Pouches., Rhea Raghu, Mohana Sengupta, Karen Lin, Felix Effah, Robert M. Strongin, Irfan Rahman

Chemistry Faculty Publications and Presentations

Electronic nicotine delivery system manufacturers, such as Charlie's Holdings Inc., ECBlend, Outlaw, and NicRiver, have recently introduced nicotine analogs, such as 6-methyl nicotine, 6-MN ("Metatine"), and nicotinamide, NA ("Nixamide," "Nixodine," or "Nixotin-free base and salt") in products to circumvent the U.S. FDA's premarket tobacco product application (PMTA) requirements. Marketed as "tobacco-free," "PMTA-exempt," or "FDA-approved," these compounds now appear in oral nicotine pouches and disposable bars/vapes from brands such as Outlaw Dip, Kumi-Six, SBX, Katchmi, and Spree Bar under proprietary labels including "NoNic6," "Metatine," or "NIC-SAFE." These products often mimic the appeal of conventional nicotine delivery systems, with extensive use of …

Neutrosophic Probability With Dynamic Temporal Uncertainty (Nptu), Bhimraj Basumatary, Ashoke Kumar Brahma

Neutrosophic Systems with Applications

This paper introduces Neutrosophic Probability with Dynamic Temporal Uncertainty (NPTU), an extension of classical neutrosophic probability that incorporates the dimension of time. In classical neutrosophic probability, the degrees of truth, indeterminacy, and falsity are considered static. However, real-world uncertainties evolve, and their degrees change as new information becomes available. NPTU models these uncertainties dynamically, allowing for more accurate decision-making in time-varying environments. The paper explores key mathematical properties of NPTU, including entropy, distance measures, similarity measures, and Kullback-Leibler (KL) divergence, to quantify and compare temporal uncertainty states. The proposed framework is demonstrated through a case study on stock price prediction, …

Double-Valued Complex Neutrosophic Graphs, Suriyakumar G, V. J. Sudhakar, Takaaki Fujita

Neutrosophic Systems with Applications

This paper introduces a novel graph-theoretic framework, called the double-valued complex neutrosophic graph, as an extension of double-valued neutrosophic set theory. Within this framework, we investigate several important classes of such graphs, including self-complementary, strong, and full double-valued complex neutrosophic graphs, and establish a number of their fundamental properties. To clarify the proposed concepts and demonstrate their structural behavior, several relevant illustrative examples are also provided.

Exact Soliton Solutions Of The Nonlinear Time-Fractional Schrödinger Equation Via Atangana–Baleanu And M-Truncated Operators, Bahadır Kopçasiz, Fatma Nur Kaya Sağlam, Mehmet Şenol

Mathematical Modelling and Numerical Simulation with Applications

The main objective of this work is to obtain exact soliton solutions for a nonlinear time-fractional equation model describing wave profiles arising in various physical systems. To derive different wave structures associated with the considered model, two analytical techniques are employed: the extended G'\G^2-expansion method and the modified auxiliary equation (MAE) approach. A wave transformation is applied to reduce the nonlinear time-fractional equation to a nonlinear ordinary differential equation (NLODE) by means of the M-truncated and Atangana-Baleanu (AB) fractional operators. Several classes of solutions, including exponential, hyperbolic, and trigonometric wave forms, are obtained. Over and above the analytical results, graphical …

Dynamical Analysis And Optimal Control Of The Mpox Transmission Model With Stratified Susceptibility, Tuhfatul Janan, Fatmawati Fatmawati, Cicik Alfiniyah, Santi Martini, Dipo Aldila, Agus Hasan

Mathematical Modelling and Numerical Simulation with Applications

This study develops a mathematical model of Mpox transmission that combines stratified susceptibility (low-risk and high-risk groups) with vaccinated and asymptomatically infected compartments. The analysis of the model begins with examining the well-posedness, boundedness, and nonnegativity conditions for the solutions. The local stabilities of the equilibria are examined through the Jacobian matrix and phase plane analysis, while the global stabilities are provided through Lyapunov functions. The estimated parameters are verified using epidemiological data on Mpox cases in the United States, with an MAPE of 2.20% and R_0 > 1, indicating that Mpox remains endemic. Sensitivity analysis indicates that the contact rate …

Shine: Multimodal Machine Learning Approaches For Solar Energetic Particles Events Event Prediction And Posthoc Analysis, Soukaina Filali Boubrahimi

Funded Research Records

No abstract provided.

Projections Of The Characteristics Of Extreme Precipitation In East Africa Using Bias-Corrected Cmip6 Models, Exavery K. Makula

Tanzania Journal of Science

In the context of ongoing global climate change, the intensification of the hydrological cycle is expected to modify the frequency, magnitude, and spatial distribution of extreme precipitation events. Understanding how precipitation extremes will evolve under climate change is critical for East Africa (EA), a region highly vulnerable to hydroclimatic hazards and strongly dependent on rainfall-driven socioeconomic systems. The region experiences two main rainfall seasons, namely the long rains (March-May, MAM) and the short rains (October-December, OND). This study investigates future projections of the characteristics of extreme precipitation across the EA using an ensemble of biascorrected CMIP6 global climate models. Extreme …

Bifurcation Exploration Of Ion Acoustic Solitons Formation Of A Nonlinear Beta Fractional Kadomtsev-Petviashvili Burger Model In Plasma State, Mst. Razia Pervin, Alrazi Abdeljabbar, Fahad Sameer Alshammari, Mst. Shekha Khatun, Harun Or-Roshid

Mathematical Modelling and Numerical Simulation with Applications

This research presents an extensive investigation of Ion acoustic soliton dynamics governed by a Beta-fractional Kadomtsev-Petviashvili-Burgurs (KPB) model. By engaging the planar dynamical system scheme in aggregation with the extended $(\phi, \psi)$ expansion, Kudryashov expansion, and the NMKM analytic schemes, we create a broad class of exact nonlinear pattern wave solutions. The local stability edifice of the fractional plasma model is explored through bifurcation theory, enabling the far-reaching classification of all admissible phase diagrams. Conforming Ion acoustic wave structures allied with every detour alignment are systematically assembled. Owing to the fractional and dissipative appearances of the model, an all-embracing assortment …

Numerical Simulations And Hyers-Ulam Stability Of A Novel Nonlocal Anthropogenic Cutaneous Leishmaniasis Mathematical Model, Khalid Fanoukh Al Oweidi, Zakirullah -, Kamal Shah, Thabet Abdeljawad

Mathematical Modelling and Numerical Simulation with Applications

In this work, the fractal-fractional Atangana-Baleanu derivative with the Mittag-Leffler kernel is employed to capture the memory and hereditary effects inherent to anthropogenic cutaneous leishmaniasis transmission dynamics. The Banach fixed-point theorem and contraction mapping principle are used to prove the existence and uniqueness of solutions, while Hyers-Ulam stability of the system is analyzed to demonstrate the robustness of solutions with respect to small perturbations. Using a nonlinear least-squares approach, model parameters and fractional order are estimated using epidemiological data from the World Health Organization. The basic reproduction number $R_0 = 0.53$ indicates that the disease is under control after adding …

Optimal Control And Bifurcation Analysis Of A Predator–Prey Model With Self-Limiting Growth And Predator Disease, Dipo Aldila, Muhammad Akmal Fasya, Bevina D. Handari, Chidozie Williams Chukwu, Olumuyiwa James Peter

Mathematical Modelling and Numerical Simulation with Applications

We propose and analyze an eco-epidemiological predator–prey model that incorporates self-limitation and disease transmission within the predator population. The model is formulated as a system of ordinary differential equations describing logistic prey growth under the interspecific interaction with the predator. On the other hand, the predator population is divided into susceptible and infected classes, whose growth is constrained by prey availability. Three biologically relevant equilibria are identified: predator extinction, disease-free coexistence, and coexistence with endemic disease. The existence and stability of these equilibria are determined by key ecological and epidemiological thresholds, including the basic reproduction number. Using numerical continuation methods, …

Measuring Market Risk Through Entropic Var, Dragomir Nedeltchev, Tsvetelin Zaevski

Mathematical Modelling and Numerical Simulation with Applications

The article aims to measure the market risk beyond the basic risk measures like the Value-at-Risk (VaR) and the Expected Shortfall (ES). The Entropic Value-at-Risk is selected among the available measures based on its advantages -- it is the coherent upper bound of the VaR and ES. This risk measure is applied to the classical Black-Scholes model as well as to some more realistic ones, such as the exponential tempered stable model (the log-returns are presented by a tempered stable L\'evy process), the stochastic volatility model of Heston, its jump extension of Bates, and another stochastic volatility model but with …

Neutrosophic Sets In Neural Networks: Theory, Applications, And Challenges, Vladimir Simic, Dragan Pamucar, Hafiz Muhammad Athar Farid

Neutrosophic Systems with Applications

The integration of neutrosophic sets into neural networks presents a novel approach to handling uncertainty, indeterminacy, and falsity in data. Traditional neural networks typically operate under the assumption of precise and complete data, but real-world applications often involve noisy, incomplete, or ambiguous information. Neutrosophic sets extend fuzzy logic by incorporating three components: truth, indeterminacy, and falsity, allowing for a more nuanced representation of uncertain data. This paper explores the theoretical foundations of neutrosophic sets and their integration with neural networks, highlighting the challenges in computational complexity, training, and optimization. The paper also discusses the potential applications of neutrosophic neural networks …

Emergent Operator Logic: A Foundational Framework For Dynamic Reasoning And Generative Intelligence, Mona Gharib, Abduallah Gamal, Muhammad Nawaz, Basma Nasir

Neutrosophic Systems with Applications

This paper introduces Emergent Operator Logic (EOL), a framework that treats propositions as continuous operators $F_p:X \rightarrow X$ on a complete metric state space $( X,d )$ and evaluates truth after action via a continuous valuation $V:X \rightarrow [ 0,1 ]$. Logical composition is realized by three operator-level connectives: sequential $p \circ q$(causal order), parallel $p\parallel q$(1-Lipschitz cooperative blend), and the emergent synthesis $E( p,q ) = \frac12( F_p \circ F_q + F_q \circ F_p )$, which symmetrizes non-commuting actions. We provide a Hilbert-style proof system (sound), an algebraic semantics via E-algebras, and show that the category of E-algebras is …

A Systematic Review Of Mathematical Interpretations Of The Weton Marriage Tradition Within Islamic Cultural Contexts, Ratna Damayanti, Surya Sari Faradiba

Jurnal Pendidikan Sains

This study is grounded in the limited integration of mathematics, culture, and religion within academic discussions of local traditions, particularly the weton marriage calculation practice. It aims to explore the mathematical concepts embedded in weton calculations and to analyse these practices from an Islamic law perspective within an interdisciplinary framework. The study employs a Systematic Literature Review (SLR) method following the six-stage PRISMA 2020 protocol, including the formulation of research questions, development of a search strategy, application of inclusion and exclusion criteria, study selection, quality assessment, and thematic synthesis. Data were collected from Google Scholar and Garuda using the keywords …

Preferences For Mathematics And Science Education Majors Among Senior High School Students In Bataan, Zydrick L. Avelino

Jurnal Pendidikan Sains

This study examines the factors influencing Senior High School students’ preferences for Bachelor of Secondary Education (BSEd) majors in Bagac and Morong, Bataan, with particular focus on the low interest in Mathematics and Science specializations despite increasing demand for STEM educators. Using a descriptive quantitative design, data were collected from 369 students through a structured survey and analyzed using frequency and percentage distributions. The results reveal a strong preference for non-STEM majors, with Social Studies (42.12%) and English (35.04%) dominating, while Science (15.43%) and Mathematics (7.395%) received significantly lower interest. Personal interest emerged as the primary determinant (58.8%), followed by …

Enhancing Introductory Cybersecurity Learning: A Design-Based Research Case Study, Manny Niri Dr.

Journal of Cybersecurity Education, Research and Practice

This study employs a design-based research (DBR) framework to examine the impact of a comprehensive curriculum redesign in an introductory Foundations of Security module for undergraduate students in computing and cybersecurity at a UK public university between 2019 and 2025. The redesign aimed to enhance student learning, engagement, and critical thinking through the embodiment of evidence-based pedagogical strategies, including flipped classroom delivery, blended learning, gamified practical exercises, repeated low-stakes mock assessments, and structured problem-solving activities. Student feedback, assessment outcomes, attendance records, and faculty reflections were analysed to evaluate the effectiveness of the redesign. The results indicate substantial improvements in student …

Ai Adoption In Research Administration At Emerging Research Institutions, Dylan Ruediger, Ruby Macdougall, Stefanie Brachfield, Douglas R. Dechow, Jonathan Parker, Jana Remy

Library Articles and Research

"With funding from the National Science Foundation’s GRANTED program (grant #2437518), Ithaka S+R, Chapman University, and Montclair State University organized two workshops to help research administrators consider how to leverage AI to build research capacity at ERIs. Our first workshop, held at Montclair State in September 2025, brought together 31 participants from 13 academic and medical institutions in the New York/New Jersey/Pennsylvania region. Our second workshop, hosted by Chapman University on December 5, 2025, included 32 participants from 13 colleges and universities in Southern California. The approximately 2,600 ERIs in the United States receive a disproportionately small amount of federal …

Development Of Deep Fused Neural Architecture For Ancient Tamil Palm-Leaf Manuscript Recognition, Hariharan P Mr

Theses and Dissertations

Digitizing Tamil palm-leaf manuscripts is important for education, communication, and the preservation of cultural heritage. The complex structure of the Tamil script, the wide range of handwriting styles, and the degradation seen in ancient Tamil palm-leaf manuscripts make these texts very difficult to read and understand. Digital Image Processing (DIP), document analysis techniques, and traditional Optical Character Recognition (OCR) are unable to handle noise, background interference, faded ink, and limited labelled data, motivating the need for robust, effective Deep Learning (DL)- based solutions.

As a prerequisite to understanding and designing effective recognition systems for ancient manuscripts, this thesis first examines …

The Blurred Boundaries Of Care: A Qualitative Analysis Of Nurse-Doula Role Conflict, Curisa Mae Tucker Phd, Rn, Maria Mcclam, Kelly Russin Dnp, Rnc-Ob, Chse, Nansi Boghossian, Rachel Gulczinski, Lauren Workman

Faculty Publications

Introduction:

Methods:

Recovery Of Bioenergy From Industrial Wastewater Using Microbial Fuel Cell, Syed Wamiq Ali, Ghulam Mujtaba, Manzoor Ahmed Sanjrani, Falak Shad

Journal of Bioresource Management

Water problems and Energy demands are increasing particularly in developing countries. Researchers are looking for sustainable technologies that can address increasing energy and environmental concerns. Major reasons behind those emerging concerns are industrialization and rapid development. There is need of sustainable technology which can solve wastewater issues and fulfill energy demand. One of the emerging technologies that have been studied comprehensively is Microbial Fuel Cell (MFC). It is a bio-electrochemical conversion technology that converts organic substrate into electrical energy. Chemical Oxygen Demand (COD) is removed as a result of microbial metabolism of organic substrate. Even through technical and economic aspects …

Design And In Silico Modeling Of Heterocyclic-Based Xanthone Derivatives As Potential Anticancer Agents Through Tyrosine Kinase Inhibition, Yehezkiel Steven Kurniawan, Ervan Yudha, Nela Fatmasari, Radite Yogaswara, Harno Dwi Pranowo, Eti Nurwening Sholikhah, Jumina Jumina

Makara Journal of Science

Cancer is one of the deadliest diseases nowadays, and tyrosine kinase receptors play crucial roles in cancer cell survival, differentiation, proliferation, and migration. This study designed and developed a new inhibitor from heterocyclic-based xanthone derivatives to target two tyrosine kinase receptors, epidermal growth factor receptor (EGFR) and platelet-derived growth factor receptor (PDGFR), through in silico screening. Eighteen heterocyclic-based xanthones were evaluated through molecular docking for both receptors. All heterocyclic-based xanthones gave the root mean square deviation (RMSD) value lower than 2.00 Å. Xanthone with isobenzothiazole substituent (iBzThio) was found as the most potent inhibitor with binding energies of -10.60 and …

Anthrone-Based Dummy Molecularly Imprinted Polymer For The Selective Detection Of Fluorene And Phenanthrene In Simulated River Water, Aria Pinandita, Nurrahmi Handayani, Muhammad Iqbal, Untung Triadhi, Rusnadi Rusnadi, Samitha Dewi Djajanti, Muhammad Bachri Amran, Muhammad Ali Zulfikar

Makara Journal of Science

A dummy-template molecularly imprinted polymer (DMIP) was synthesized via precipitation polymerization using anthrone as a template analog for the selective analysis of low-molecular-weight polycyclic aromatic hydrocarbons (PAHs), specifically fluorene and phenanthrene. Styrene, benzoyl peroxide, and ethylene glycol dimethacrylate were employed as the functional monomer, radical initiator, and crosslinking agent, respectively. The synthesized polymers were characterized by Fourier-transform infrared spectroscopy, scanning electron microscopy, and particle size analysis. The imprinting factors were 1.16 and 1.09 for fluorene and phenanthrene, respectively, indicating enhanced affinity of the imprinted sites. High-performance liquid chromatography analysis following DMIP-based solid-phase extraction yielded recoveries of 91.49% ± 3.87% for …